Wall clock time and date at job start Tue Mar 31 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50704 * 119.97113 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46899 * 269.97898 * 8 7 6 10 10 O 1.21283 * 120.00686 * 359.97438 * 9 8 7 11 11 N 1.34784 * 119.99672 * 179.97438 * 9 8 7 12 12 C 1.46500 * 119.99937 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.47010 * 90.00070 * 12 11 9 14 14 H 1.07999 * 119.99520 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99951 * 180.02562 * 13 12 11 16 16 N 1.31506 * 119.99919 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99695 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47328 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47082 * 119.99945 * 17 15 13 20 20 H 1.48503 * 109.47315 * 239.99821 * 17 15 13 21 21 C 1.46495 * 120.00108 * 359.97438 * 11 9 8 22 22 C 1.52998 * 109.47072 * 119.99916 * 21 11 9 23 23 C 1.52998 * 109.47330 * 239.99879 * 21 11 9 24 24 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 25 25 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 26 26 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 27 27 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 29 29 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 30 30 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 31 31 H 1.09003 * 109.47240 * 29.97765 * 8 7 6 32 32 H 1.09001 * 109.47227 * 149.97786 * 8 7 6 33 33 H 1.08998 * 109.47393 * 210.00025 * 12 11 9 34 34 H 1.09004 * 109.47337 * 330.00368 * 12 11 9 35 35 H 0.97008 * 119.99561 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47368 * 0.02562 * 21 11 9 37 37 H 1.09003 * 109.47351 * 59.99776 * 22 21 11 38 38 H 1.08996 * 109.47431 * 180.02562 * 22 21 11 39 39 H 1.08999 * 109.47536 * 300.00083 * 22 21 11 40 40 H 1.09003 * 109.47098 * 59.99865 * 23 21 11 41 41 H 1.09000 * 109.47427 * 180.02562 * 23 21 11 42 42 H 1.09003 * 109.46752 * 300.00014 * 23 21 11 43 43 H 1.08006 * 120.02917 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 0.0002 9 6 6.0624 2.6249 -1.4206 10 8 5.2755 2.5818 -2.3425 11 7 7.3856 2.6967 -1.6668 12 6 7.8734 2.7220 -3.0480 13 6 7.9634 4.1495 -3.5228 14 1 7.6856 4.9570 -2.8616 15 6 8.4006 4.4245 -4.8012 16 7 8.7384 3.4411 -5.6063 17 14 8.5129 6.1939 -5.3894 18 1 8.0781 7.1059 -4.3011 19 1 9.9163 6.5029 -5.7638 20 1 7.6330 6.3795 -6.5712 21 6 8.3360 2.7493 -0.5533 22 6 9.2822 1.5497 -0.6332 23 6 9.1465 4.0444 -0.6353 24 6 3.4311 1.2849 -0.0001 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.2128 2.3203 -0.0106 29 1 1.3339 4.5114 0.0011 30 1 3.7922 4.6381 0.0002 31 1 5.8756 3.5067 0.5138 32 1 5.9714 1.7293 0.5143 33 1 8.8600 2.2611 -3.0934 34 1 7.1844 2.1694 -3.6868 35 1 9.0463 3.6347 -6.5056 36 1 7.7918 2.7201 0.3907 37 1 9.8265 1.5784 -1.5772 38 1 9.9891 1.5885 0.1956 39 1 8.7048 0.6270 -0.5747 40 1 8.4725 4.8991 -0.5784 41 1 9.8541 4.0834 0.1930 42 1 9.6908 4.0731 -1.5793 43 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530377.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:26 Heat of formation + Delta-G solvation = -74.445096 kcal Electronic energy + Delta-G solvation = -23418.016061 eV Core-core repulsion = 20041.631919 eV Total energy + Delta-G solvation = -3376.384142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30750 -40.57113 -38.47093 -37.41867 -34.95807 -33.55968 -32.37753 -31.45872 -29.95439 -28.35292 -27.98674 -27.63785 -24.86714 -23.50939 -22.83497 -22.06943 -19.68189 -18.58588 -18.54582 -18.16217 -17.25211 -16.94958 -16.87498 -16.60871 -16.21092 -15.88813 -15.04740 -14.83533 -14.76694 -14.65284 -14.27908 -14.15581 -13.87991 -13.44970 -13.31793 -13.21153 -12.93431 -12.82170 -12.78966 -12.65729 -12.54786 -12.39427 -12.18754 -12.06748 -11.94874 -11.75139 -11.59013 -11.47289 -10.61032 -10.59712 -9.74790 -9.37847 -9.12431 -8.17914 -6.29649 0.34957 0.52185 1.35682 1.38267 1.49487 1.89233 2.30109 2.38541 2.48093 2.87271 3.11949 3.69116 3.88741 3.89480 4.06688 4.13690 4.24068 4.33113 4.36851 4.39917 4.41412 4.46929 4.53769 4.62375 4.72651 4.79658 4.87966 4.90753 5.03700 5.08236 5.11223 5.15698 5.26990 5.33400 5.46740 5.48201 5.61297 5.65638 5.67810 5.83150 5.93174 6.13748 6.48293 6.77047 6.88262 7.34044 7.55859 8.89595 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017430 B = 0.004091 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.024686 B = 6843.157305 C = 7472.915595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.112 3.888 4 C -0.213 4.213 5 C -0.083 4.083 6 C -0.158 4.158 7 C -0.033 4.033 8 C -0.092 4.092 9 C 0.498 3.502 10 O -0.593 6.593 11 N -0.598 5.598 12 C 0.265 3.735 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.004 3.996 16 N -0.932 5.932 17 Si 0.962 3.038 18 H -0.265 1.265 19 H -0.271 1.271 20 H -0.286 1.286 21 C 0.123 3.877 22 C -0.157 4.157 23 C -0.152 4.152 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.118 0.882 28 H 0.152 0.848 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.025 0.975 34 H -0.012 1.012 35 H 0.264 0.736 36 H 0.119 0.881 37 H 0.036 0.964 38 H 0.097 0.903 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.041 0.959 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.999 -2.433 18.539 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.067 3.933 4 C -0.231 4.231 5 C -0.101 4.101 6 C -0.176 4.176 7 C -0.034 4.034 8 C -0.131 4.131 9 C 0.287 3.713 10 O -0.474 6.474 11 N -0.329 5.329 12 C 0.143 3.857 13 C -0.561 4.561 14 H 0.074 0.926 15 C -0.194 4.194 16 N -0.572 5.572 17 Si 0.787 3.213 18 H -0.189 1.189 19 H -0.196 1.196 20 H -0.212 1.212 21 C 0.021 3.979 22 C -0.215 4.215 23 C -0.210 4.210 24 C -0.179 4.179 25 H 0.089 0.911 26 H 0.077 0.923 27 H 0.137 0.863 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.042 0.958 34 H 0.006 0.994 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.055 0.945 38 H 0.116 0.884 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.231 -2.695 17.896 20.789 hybrid contribution 0.027 0.751 -1.280 1.484 sum -10.204 -1.944 16.615 19.595 Atomic orbital electron populations 1.23335 0.76460 1.05518 1.02235 1.86034 1.23551 1.26880 1.88879 1.19107 0.92243 0.85018 0.96962 1.21481 1.01088 0.91860 1.08719 1.21222 0.94218 0.98100 0.96556 1.21178 0.94753 0.98097 1.03611 1.19275 0.94546 0.92800 0.96759 1.20780 0.92091 1.07244 0.93017 1.21163 0.82085 0.76113 0.91946 1.90663 1.56127 1.52079 1.48506 1.48373 1.05708 1.70666 1.08179 1.18622 0.93100 0.95821 0.78144 1.21706 1.42896 0.93077 0.98450 0.92644 1.25818 0.95264 1.01582 0.96736 1.70069 1.45962 1.33255 1.07953 0.85453 0.77942 0.79813 0.78133 1.18945 1.19629 1.21189 1.21452 0.90815 0.96235 0.89395 1.22130 0.99688 0.97146 1.02567 1.22084 1.00165 0.96355 1.02399 1.20366 0.92237 0.98162 1.07136 0.91117 0.92304 0.86340 0.83035 0.83158 0.85324 0.85411 0.85455 0.95751 0.99399 0.92715 0.86325 0.94499 0.88391 0.92529 0.93627 0.89130 0.93955 0.85775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.41 16 2 O -0.34 -8.87 10.50 -92.48 -0.97 -9.84 16 3 C 0.11 3.21 6.69 22.50 0.15 3.36 16 4 C -0.21 -5.20 9.04 22.37 0.20 -5.00 16 5 C -0.08 -2.06 10.04 22.26 0.22 -1.83 16 6 C -0.16 -4.54 9.70 22.28 0.22 -4.32 16 7 C -0.03 -1.02 4.37 -19.88 -0.09 -1.11 16 8 C -0.09 -2.63 4.14 29.10 0.12 -2.51 16 9 C 0.50 21.05 7.67 87.65 0.67 21.72 16 10 O -0.59 -31.92 15.61 -3.04 -0.05 -31.97 16 11 N -0.60 -25.31 2.39 -802.14 -1.91 -27.22 16 12 C 0.26 14.41 4.59 85.64 0.39 14.80 16 13 C -0.52 -30.06 7.83 25.60 0.20 -29.86 16 14 H 0.06 3.15 7.63 -2.91 -0.02 3.13 16 15 C 0.00 0.24 5.46 84.66 0.46 0.70 16 16 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 17 Si 0.96 45.62 29.54 68.60 2.03 47.65 16 18 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 C 0.12 3.72 3.17 44.99 0.14 3.87 16 22 C -0.16 -4.31 9.17 71.98 0.66 -3.65 16 23 C -0.15 -4.68 8.47 71.98 0.61 -4.07 16 24 C -0.16 -5.01 9.64 22.36 0.22 -4.80 16 25 H 0.07 0.85 7.67 -2.39 -0.02 0.84 16 26 H 0.06 0.87 7.65 -2.39 -0.02 0.85 16 27 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.15 2.69 6.30 -2.91 -0.02 2.67 16 29 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 30 H 0.13 3.39 8.06 -2.91 -0.02 3.36 16 31 H 0.13 2.89 7.73 -2.39 -0.02 2.87 16 32 H 0.13 2.82 7.73 -2.39 -0.02 2.80 16 33 H 0.02 1.36 6.43 -2.39 -0.02 1.34 16 34 H -0.01 -0.78 7.42 -2.38 -0.02 -0.80 16 35 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 36 H 0.12 2.58 5.77 -2.39 -0.01 2.57 16 37 H 0.04 1.24 6.66 -2.39 -0.02 1.22 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.63 6.92 -2.39 -0.02 1.61 16 43 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -79.68 353.53 5.66 -74.02 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.99 Total: 15.76 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 5.29 Total: -11.30 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -1.63 Total: -84.32 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.02 Total: -41.81 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -79.68 5.66 -74.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530377.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.424 kcal (2) G-P(sol) polarization free energy of solvation -79.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds