Wall clock time and date at job start Tue Mar 31 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35908 * 116.99500 * 2 1 4 4 C 1.38731 * 120.05061 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94342 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05180 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94285 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47478 * 89.99744 * 7 6 5 9 9 O 1.21282 * 119.99779 * 4.51557 * 8 7 6 10 10 N 1.34780 * 120.00009 * 184.24476 * 8 7 6 11 11 C 1.46496 * 119.99821 * 175.01669 * 10 8 7 12 12 C 1.50694 * 109.47770 * 89.99529 * 11 10 8 13 13 H 1.08006 * 119.99458 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00352 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00127 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99994 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47070 * 60.00270 * 16 14 12 18 18 H 1.48496 * 109.47360 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47541 * 300.00500 * 16 14 12 20 20 C 1.46500 * 119.99982 * 355.00867 * 10 8 7 21 21 C 1.52996 * 109.46771 * 114.61995 * 20 10 8 22 22 C 1.53002 * 109.46823 * 234.62018 * 20 10 8 23 23 C 1.38265 * 120.11589 * 0.25137 * 6 5 4 24 24 C 1.38142 * 120.05254 * 359.45437 * 23 6 5 25 25 H 1.08991 * 109.47379 * 300.00639 * 1 2 3 26 26 H 1.09006 * 109.46676 * 60.00550 * 1 2 3 27 27 H 1.09000 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.02990 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97488 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.46818 * 329.99763 * 7 6 5 31 31 H 1.08998 * 109.47093 * 210.00270 * 7 6 5 32 32 H 1.09005 * 109.47170 * 209.99692 * 11 10 8 33 33 H 1.09004 * 109.47475 * 329.99114 * 11 10 8 34 34 H 0.97004 * 120.00366 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.46888 * 354.61700 * 20 10 8 36 36 H 1.09003 * 109.47172 * 62.43240 * 21 20 10 37 37 H 1.09002 * 109.46469 * 182.42449 * 21 20 10 38 38 H 1.08993 * 109.47197 * 302.42214 * 21 20 10 39 39 H 1.08994 * 109.47328 * 60.18110 * 22 20 10 40 40 H 1.09008 * 109.46571 * 180.17433 * 22 20 10 41 41 H 1.08995 * 109.47199 * 300.16973 * 22 20 10 42 42 H 1.07991 * 119.97534 * 179.70641 * 23 6 5 43 43 H 1.07994 * 120.03198 * 180.25150 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 4.2145 5.4673 -1.4176 9 8 3.7848 4.8060 -2.3389 10 7 4.8917 6.6063 -1.6638 11 6 5.2089 6.9863 -3.0426 12 6 4.0906 7.8275 -3.6019 13 1 3.2294 8.0558 -2.9914 14 6 4.1669 8.3056 -4.8929 15 7 5.2153 8.0271 -5.6364 16 14 2.7803 9.3477 -5.5863 17 1 2.6193 10.5708 -4.7598 18 1 3.1025 9.7340 -6.9835 19 1 1.5170 8.5673 -5.5668 20 6 5.3104 7.4643 -0.5527 21 6 6.8382 7.4900 -0.4760 22 6 4.7871 8.8841 -0.7795 23 6 1.9209 3.6049 0.0069 24 6 1.2914 2.3752 0.0002 25 1 -0.3633 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.0208 0.3801 0.0014 29 1 5.1344 2.5752 0.0011 30 1 4.9436 4.9381 0.5169 31 1 3.3576 5.7461 0.5169 32 1 6.1365 7.5587 -3.0575 33 1 5.3264 6.0883 -3.6492 34 1 5.2691 8.3638 -6.5446 35 1 4.9062 7.0729 0.3809 36 1 7.2409 7.9215 -1.3924 37 1 7.1490 8.0936 0.3768 38 1 7.2132 6.4735 -0.3575 39 1 3.6985 8.8662 -0.8310 40 1 5.1013 9.5232 0.0458 41 1 5.1889 9.2743 -1.7145 42 1 1.3340 4.5114 0.0121 43 1 0.2129 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:29 Heat of formation + Delta-G solvation = -53.646627 kcal Electronic energy + Delta-G solvation = -23336.521568 eV Core-core repulsion = 19961.039315 eV Total energy + Delta-G solvation = -3375.482253 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15136 -39.14760 -37.40332 -35.81580 -32.88625 -31.94448 -30.95513 -30.77480 -28.41977 -27.39308 -26.67673 -25.86133 -22.91046 -22.53321 -21.48379 -20.86381 -18.20301 -17.90496 -16.61679 -16.44360 -16.22034 -15.75368 -15.51754 -14.81148 -14.54173 -14.32564 -13.87261 -13.66426 -13.41907 -13.34859 -13.27582 -12.61176 -12.47149 -12.27656 -12.05583 -11.67325 -11.63470 -11.50200 -11.45968 -11.09405 -10.97516 -10.88065 -10.82106 -10.69969 -10.52691 -10.34782 -9.98086 -9.51651 -8.88100 -8.83561 -8.38358 -7.94513 -7.59117 -5.99465 -4.02393 1.48692 1.54413 3.25773 3.33376 3.38240 3.40383 3.50633 3.77114 4.12583 4.48543 4.81891 4.92288 4.97965 5.01853 5.04998 5.21950 5.31665 5.32563 5.36512 5.38832 5.48942 5.57718 5.62651 5.69158 5.76583 5.82791 6.01618 6.15276 6.16903 6.27427 6.36998 6.39055 6.45811 6.62477 6.78422 6.85047 6.99481 7.15960 7.42561 7.50766 7.63094 7.97490 8.30274 8.51236 8.96613 9.18169 9.61515 11.08678 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.004085 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.543744 B = 6853.365583 C = 7818.828285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.117 3.883 4 C -0.150 4.150 5 C -0.068 4.068 6 C -0.089 4.089 7 C -0.102 4.102 8 C 0.504 3.496 9 O -0.531 6.531 10 N -0.596 5.596 11 C 0.249 3.751 12 C -0.516 4.516 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.897 5.897 16 Si 0.894 3.106 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.133 3.867 21 C -0.162 4.162 22 C -0.155 4.155 23 C -0.064 4.064 24 C -0.205 4.205 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.096 0.904 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 -8.297 16.162 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.072 3.928 4 C -0.169 4.169 5 C -0.087 4.087 6 C -0.089 4.089 7 C -0.142 4.142 8 C 0.290 3.710 9 O -0.408 6.408 10 N -0.328 5.328 11 C 0.130 3.870 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.142 4.142 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C 0.028 3.972 21 C -0.220 4.220 22 C -0.213 4.213 23 C -0.082 4.082 24 C -0.224 4.224 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.115 0.885 28 H 0.145 0.855 29 H 0.144 0.856 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.098 0.902 42 H 0.140 0.860 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.646 -8.797 15.459 18.156 hybrid contribution -1.028 0.882 -0.562 1.466 sum -4.674 -7.915 14.897 17.504 Atomic orbital electron populations 1.23011 0.78736 1.03571 1.01373 1.86038 1.21139 1.27246 1.89087 1.18984 0.92374 0.83929 0.97481 1.20315 0.91272 0.98416 1.06869 1.20783 0.99672 0.91005 0.97198 1.19293 0.93453 0.94086 1.02108 1.20724 1.01746 0.94868 0.96835 1.20227 0.79119 0.81492 0.90127 1.90699 1.48834 1.55104 1.46131 1.48350 1.54765 1.20702 1.09031 1.19178 0.95985 0.96285 0.75561 1.21398 1.04874 1.31200 0.98069 0.92517 1.24917 0.95876 0.96639 0.96733 1.69917 1.28771 1.45742 1.09171 0.86627 0.82699 0.80491 0.78003 1.20312 1.21277 1.20310 1.20993 0.94401 0.92150 0.89625 1.22177 0.95991 1.01543 1.02332 1.22107 1.01629 0.95046 1.02479 1.20767 0.93950 0.97004 0.96515 1.21126 0.99717 0.92322 1.09213 0.92832 0.92626 0.88528 0.85459 0.85558 0.88855 0.88758 0.94975 0.94339 0.92796 0.90764 0.91552 0.92350 0.92927 0.92603 0.93350 0.90180 0.85963 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.13 10.50 -19.45 -0.20 -4.34 16 3 C 0.12 1.66 6.69 -39.22 -0.26 1.39 16 4 C -0.15 -2.10 9.99 -39.43 -0.39 -2.50 16 5 C -0.07 -0.99 9.69 -39.60 -0.38 -1.37 16 6 C -0.09 -1.36 4.38 -104.60 -0.46 -1.82 16 7 C -0.10 -1.50 4.16 -29.04 -0.12 -1.62 16 8 C 0.50 10.42 7.65 -10.99 -0.08 10.34 16 9 O -0.53 -13.60 15.68 5.56 0.09 -13.51 16 10 N -0.60 -12.36 2.38 -167.47 -0.40 -12.76 16 11 C 0.25 6.42 4.41 -5.20 -0.02 6.40 16 12 C -0.52 -14.40 7.84 -34.44 -0.27 -14.67 16 13 H 0.06 1.58 7.54 -52.48 -0.40 1.19 16 14 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 C 0.13 2.11 3.11 -67.93 -0.21 1.90 16 21 C -0.16 -2.29 9.22 37.16 0.34 -1.95 16 22 C -0.15 -2.54 8.35 37.16 0.31 -2.23 16 23 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 24 C -0.21 -2.81 9.04 -39.43 -0.36 -3.17 16 25 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 26 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.13 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.09 1.14 7.84 -51.93 -0.41 0.73 16 31 H 0.09 1.20 7.62 -51.93 -0.40 0.81 16 32 H 0.03 0.84 6.75 -51.93 -0.35 0.49 16 33 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 0.96 5.86 -51.93 -0.30 0.66 16 36 H 0.07 1.07 6.97 -51.93 -0.36 0.71 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.97 7.98 -51.93 -0.41 0.55 16 40 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 41 H 0.08 1.56 6.93 -51.93 -0.36 1.20 16 42 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 353.85 15.07 5.33 5.33 Total: -1.00 -34.06 353.85 -7.47 -41.53 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.60 Total: 0.51 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -1.40 Total: -7.78 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.34 Total: -38.68 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.12 Total: -17.84 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.06 -7.47 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.115 kcal (2) G-P(sol) polarization free energy of solvation -34.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds