Wall clock time and date at job start Tue Mar 31 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35908 * 116.99500 * 2 1 4 4 C 1.38731 * 120.05061 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94342 * 180.02562 * 4 3 2 6 6 C 1.38268 * 120.05180 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.94285 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47478 * 89.99744 * 7 6 5 9 9 O 1.21282 * 119.99779 * 4.51557 * 8 7 6 10 10 N 1.34780 * 120.00009 * 184.24476 * 8 7 6 11 11 C 1.46496 * 119.99821 * 175.01669 * 10 8 7 12 12 C 1.50694 * 109.47770 * 89.99529 * 11 10 8 13 13 H 1.08006 * 119.99458 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00352 * 179.97438 * 12 11 10 15 15 N 1.31510 * 120.00127 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99994 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47070 * 60.00270 * 16 14 12 18 18 H 1.48496 * 109.47360 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47541 * 300.00500 * 16 14 12 20 20 C 1.46500 * 119.99982 * 355.00867 * 10 8 7 21 21 C 1.52996 * 109.46771 * 114.61995 * 20 10 8 22 22 C 1.53002 * 109.46823 * 234.62018 * 20 10 8 23 23 C 1.38265 * 120.11589 * 0.25137 * 6 5 4 24 24 C 1.38142 * 120.05254 * 359.45437 * 23 6 5 25 25 H 1.08991 * 109.47379 * 300.00639 * 1 2 3 26 26 H 1.09006 * 109.46676 * 60.00550 * 1 2 3 27 27 H 1.09000 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.08001 * 120.02990 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.97488 * 180.02562 * 5 4 3 30 30 H 1.09001 * 109.46818 * 329.99763 * 7 6 5 31 31 H 1.08998 * 109.47093 * 210.00270 * 7 6 5 32 32 H 1.09005 * 109.47170 * 209.99692 * 11 10 8 33 33 H 1.09004 * 109.47475 * 329.99114 * 11 10 8 34 34 H 0.97004 * 120.00366 * 180.02562 * 15 14 12 35 35 H 1.09004 * 109.46888 * 354.61700 * 20 10 8 36 36 H 1.09003 * 109.47172 * 62.43240 * 21 20 10 37 37 H 1.09002 * 109.46469 * 182.42449 * 21 20 10 38 38 H 1.08993 * 109.47197 * 302.42214 * 21 20 10 39 39 H 1.08994 * 109.47328 * 60.18110 * 22 20 10 40 40 H 1.09008 * 109.46571 * 180.17433 * 22 20 10 41 41 H 1.08995 * 109.47199 * 300.16973 * 22 20 10 42 42 H 1.07991 * 119.97534 * 179.70641 * 23 6 5 43 43 H 1.07994 * 120.03198 * 180.25150 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0011 6 6 3.3017 3.6759 0.0016 7 6 3.9858 5.0187 0.0028 8 6 4.2145 5.4673 -1.4176 9 8 3.7848 4.8060 -2.3389 10 7 4.8917 6.6063 -1.6638 11 6 5.2089 6.9863 -3.0426 12 6 4.0906 7.8275 -3.6019 13 1 3.2294 8.0558 -2.9914 14 6 4.1669 8.3056 -4.8929 15 7 5.2153 8.0271 -5.6364 16 14 2.7803 9.3477 -5.5863 17 1 2.6193 10.5708 -4.7598 18 1 3.1025 9.7340 -6.9835 19 1 1.5170 8.5673 -5.5668 20 6 5.3104 7.4643 -0.5527 21 6 6.8382 7.4900 -0.4760 22 6 4.7871 8.8841 -0.7795 23 6 1.9209 3.6049 0.0069 24 6 1.2914 2.3752 0.0002 25 1 -0.3633 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 4.0208 0.3801 0.0014 29 1 5.1344 2.5752 0.0011 30 1 4.9436 4.9381 0.5169 31 1 3.3576 5.7461 0.5169 32 1 6.1365 7.5587 -3.0575 33 1 5.3264 6.0883 -3.6492 34 1 5.2691 8.3638 -6.5446 35 1 4.9062 7.0729 0.3809 36 1 7.2409 7.9215 -1.3924 37 1 7.1490 8.0936 0.3768 38 1 7.2132 6.4735 -0.3575 39 1 3.6985 8.8662 -0.8310 40 1 5.1013 9.5232 0.0458 41 1 5.1889 9.2743 -1.7145 42 1 1.3340 4.5114 0.0121 43 1 0.2129 2.3202 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530378.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:29 Heat of formation + Delta-G solvation = -74.627644 kcal Electronic energy + Delta-G solvation = -23337.431373 eV Core-core repulsion = 19961.039315 eV Total energy + Delta-G solvation = -3376.392058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.27622 -40.56798 -38.48567 -37.38503 -34.94826 -33.17695 -32.36452 -31.99542 -29.89708 -28.59968 -27.89883 -27.19870 -24.80249 -23.59861 -22.82019 -22.09507 -19.55695 -19.04408 -18.58250 -18.10866 -17.26463 -16.98879 -16.61621 -16.44523 -16.04092 -15.71517 -15.09801 -14.83053 -14.73078 -14.70123 -14.43638 -14.22509 -13.84956 -13.46752 -13.33710 -13.24401 -12.91026 -12.83289 -12.72627 -12.70176 -12.56618 -12.35344 -12.18865 -12.05561 -11.92027 -11.70199 -11.58357 -11.50976 -10.59997 -10.52263 -9.91466 -9.35978 -9.02350 -8.17521 -6.29220 0.42543 0.45018 1.35439 1.39461 1.46280 1.92398 2.32712 2.39550 2.47433 2.87674 3.12061 3.78391 3.85012 3.93048 3.98036 4.11456 4.24611 4.34062 4.38602 4.42412 4.43905 4.49442 4.58227 4.67949 4.74294 4.79230 4.89155 4.91268 5.06170 5.08971 5.10982 5.15995 5.25299 5.32854 5.39785 5.47986 5.60822 5.67516 5.69484 5.83561 5.94513 6.14374 6.46175 6.77279 6.91236 7.34752 7.59089 8.89400 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016657 B = 0.004085 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.543744 B = 6853.365583 C = 7818.828285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.109 3.891 4 C -0.164 4.164 5 C -0.077 4.077 6 C -0.110 4.110 7 C -0.085 4.085 8 C 0.495 3.505 9 O -0.592 6.592 10 N -0.600 5.600 11 C 0.268 3.732 12 C -0.523 4.523 13 H 0.053 0.947 14 C 0.005 3.995 15 N -0.932 5.932 16 Si 0.959 3.041 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.125 3.875 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.079 4.079 24 C -0.211 4.211 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.023 0.977 33 H -0.013 1.013 34 H 0.264 0.736 35 H 0.119 0.881 36 H 0.035 0.965 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.042 0.958 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.130 0.870 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.516 -7.841 18.717 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.064 3.936 4 C -0.182 4.182 5 C -0.095 4.095 6 C -0.111 4.111 7 C -0.125 4.125 8 C 0.285 3.715 9 O -0.473 6.473 10 N -0.332 5.332 11 C 0.147 3.853 12 C -0.562 4.562 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.572 5.572 16 Si 0.784 3.216 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.207 1.207 20 C 0.022 3.978 21 C -0.215 4.215 22 C -0.208 4.208 23 C -0.097 4.097 24 C -0.230 4.230 25 H 0.086 0.914 26 H 0.074 0.926 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.041 0.959 33 H 0.005 0.995 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.054 0.946 37 H 0.115 0.885 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.148 0.852 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.567 -8.319 18.070 20.411 hybrid contribution -0.756 0.661 -1.332 1.668 sum -5.323 -7.658 16.738 19.161 Atomic orbital electron populations 1.23320 0.76680 1.05527 1.02045 1.86023 1.23321 1.26702 1.88864 1.19196 0.92732 0.84602 0.97073 1.20591 0.91780 0.98974 1.06885 1.21034 1.00536 0.91034 0.96883 1.19463 0.93906 0.94495 1.03225 1.20694 1.04084 0.95192 0.92498 1.21323 0.77528 0.80470 0.92223 1.90663 1.51214 1.56791 1.48649 1.48399 1.54739 1.21765 1.08248 1.18559 0.95188 0.93331 0.78256 1.21641 1.05066 1.31117 0.98378 0.92897 1.25792 0.98326 0.97986 0.97188 1.70046 1.30694 1.46962 1.09508 0.85596 0.79100 0.79234 0.77665 1.18416 1.20616 1.20653 1.21435 0.95844 0.91163 0.89339 1.22141 0.94379 1.02542 1.02434 1.22054 1.00589 0.96040 1.02152 1.21017 0.94185 0.97802 0.96668 1.21384 1.00935 0.91913 1.08730 0.91415 0.92624 0.86066 0.84157 0.84169 0.85459 0.85966 0.95945 0.99476 0.92696 0.86371 0.94607 0.88479 0.92230 0.93881 0.89182 0.94098 0.85192 0.83655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -8.21 10.50 -92.51 -0.97 -9.18 16 3 C 0.11 2.99 6.69 22.51 0.15 3.14 16 4 C -0.16 -4.48 9.99 22.37 0.22 -4.25 16 5 C -0.08 -2.14 9.69 22.26 0.22 -1.92 16 6 C -0.11 -3.23 4.38 -19.85 -0.09 -3.31 16 7 C -0.09 -2.32 4.16 29.10 0.12 -2.19 16 8 C 0.50 20.42 7.65 87.65 0.67 21.09 16 9 O -0.59 -31.37 15.68 -3.03 -0.05 -31.42 16 10 N -0.60 -24.96 2.38 -802.15 -1.91 -26.88 16 11 C 0.27 14.47 4.41 85.63 0.38 14.85 16 12 C -0.52 -30.10 7.84 25.60 0.20 -29.90 16 13 H 0.05 3.01 7.54 -2.91 -0.02 2.99 16 14 C 0.01 0.31 5.46 84.66 0.46 0.77 16 15 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 16 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 20 C 0.12 3.68 3.11 44.99 0.14 3.82 16 21 C -0.16 -4.08 9.22 71.98 0.66 -3.42 16 22 C -0.15 -4.68 8.35 71.98 0.60 -4.08 16 23 C -0.08 -2.24 9.69 22.25 0.22 -2.02 16 24 C -0.21 -5.54 9.04 22.37 0.20 -5.34 16 25 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 26 H 0.06 0.87 7.66 -2.38 -0.02 0.85 16 27 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 29 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 30 H 0.13 2.58 7.84 -2.39 -0.02 2.56 16 31 H 0.12 2.64 7.62 -2.39 -0.02 2.63 16 32 H 0.02 1.24 6.75 -2.38 -0.02 1.23 16 33 H -0.01 -0.82 7.50 -2.38 -0.02 -0.84 16 34 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.12 2.51 5.86 -2.38 -0.01 2.49 16 36 H 0.03 1.14 6.97 -2.39 -0.02 1.12 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.42 7.98 -2.39 -0.02 1.40 16 40 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.04 1.58 6.93 -2.39 -0.02 1.57 16 42 H 0.13 3.35 8.06 -2.92 -0.02 3.33 16 43 H 0.15 3.02 6.30 -2.91 -0.02 3.00 16 Total: -1.00 -78.81 353.85 5.64 -73.17 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.99 Total: 14.97 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.27 Total: -11.36 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -1.63 Total: -83.84 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.02 Total: -40.60 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.81 5.64 -73.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530378.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.459 kcal (2) G-P(sol) polarization free energy of solvation -78.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds