Wall clock time and date at job start Tue Mar 31 2020 06:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46726 * 2 1 4 4 N 1.46493 * 109.47115 * 119.99576 * 2 1 3 5 5 C 1.46501 * 120.00542 * 300.00307 * 4 2 1 6 6 C 1.50699 * 109.47081 * 270.00380 * 5 4 2 7 7 H 1.07994 * 120.00048 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99946 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99741 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47395 * 90.00052 * 10 8 6 12 12 H 1.48504 * 109.46689 * 209.99991 * 10 8 6 13 13 H 1.48501 * 109.47166 * 329.99754 * 10 8 6 14 14 C 1.34775 * 119.99948 * 120.00236 * 4 2 1 15 15 O 1.21286 * 120.00172 * 180.02562 * 14 4 2 16 16 C 1.50700 * 119.99922 * 0.02562 * 14 4 2 17 17 C 1.53001 * 109.47427 * 179.97438 * 16 14 4 18 18 O 1.42902 * 109.47386 * 179.97438 * 17 16 14 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 1.08994 * 109.47135 * 300.00238 * 1 2 3 26 26 H 1.08996 * 109.47138 * 60.00120 * 1 2 3 27 27 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47322 * 240.00523 * 2 1 3 29 29 H 1.09004 * 109.47080 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47214 * 299.99833 * 3 2 1 31 31 H 1.08994 * 109.47508 * 59.99990 * 3 2 1 32 32 H 1.09004 * 109.46779 * 29.99870 * 5 4 2 33 33 H 1.08998 * 109.47269 * 149.99700 * 5 4 2 34 34 H 0.97003 * 119.99836 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47374 * 59.99814 * 16 14 4 36 36 H 1.09006 * 109.46766 * 299.99807 * 16 14 4 37 37 H 1.08999 * 109.46920 * 59.99629 * 17 16 14 38 38 H 1.08998 * 109.47220 * 299.99999 * 17 16 14 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5430 1.0359 2.3457 8 6 2.5810 1.4110 4.2140 9 7 3.4877 2.2763 4.6123 10 14 1.1278 1.0068 5.3159 11 1 1.4761 -0.1386 6.1944 12 1 0.7967 2.1888 6.1517 13 1 -0.0447 0.6492 4.4776 14 6 2.7932 -1.7863 1.0726 15 8 3.1971 -2.3582 2.0629 16 6 3.1578 -2.3008 -0.2961 17 6 4.0379 -3.5445 -0.1558 18 8 4.3831 -4.0328 -1.4537 19 6 5.1670 -5.1415 -1.5072 20 6 5.5400 -5.6701 -2.7345 21 6 6.3374 -6.7969 -2.7864 22 6 6.7633 -7.3983 -1.6165 23 6 6.3933 -6.8733 -0.3920 24 6 5.5960 -5.7466 -0.3349 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.6904 0.2974 2.4843 33 1 1.6238 -1.0225 3.2291 34 1 3.4020 2.7045 5.4785 35 1 3.7029 -1.5300 -0.8408 36 1 2.2495 -2.5576 -0.8415 37 1 3.4931 -4.3155 0.3891 38 1 4.9460 -3.2873 0.3894 39 1 5.2037 -5.2034 -3.6486 40 1 6.6277 -7.2090 -3.7416 41 1 7.3863 -8.2795 -1.6592 42 1 6.7275 -7.3446 0.5203 43 1 5.3069 -5.3371 0.6217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:38 Heat of formation + Delta-G solvation = -52.557332 kcal Electronic energy + Delta-G solvation = -22984.274633 eV Core-core repulsion = 19608.839616 eV Total energy + Delta-G solvation = -3375.435018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22146 -39.36146 -37.46810 -36.14197 -32.89381 -32.02049 -31.07163 -31.02720 -29.67593 -28.00221 -26.79850 -24.70192 -22.74040 -22.29902 -21.65443 -21.08305 -18.57323 -17.88447 -16.92964 -16.79513 -16.26072 -15.95933 -15.77741 -15.21158 -14.68431 -14.49968 -13.99187 -13.64472 -13.57107 -13.45243 -13.25076 -13.06951 -12.55688 -12.51794 -11.95381 -11.87398 -11.80299 -11.71435 -11.69258 -11.38078 -10.98830 -10.91413 -10.84554 -10.72590 -10.53060 -10.34660 -10.12487 -9.49734 -9.13159 -9.12056 -8.59331 -8.29677 -7.77852 -6.09433 -4.07208 1.21341 1.33376 2.96805 3.23598 3.27414 3.33345 3.35658 3.67678 3.88035 4.38270 4.68576 4.77082 4.87568 4.97954 5.02730 5.06425 5.17580 5.24020 5.24856 5.29351 5.44932 5.49749 5.55095 5.58165 5.80504 5.82405 5.87714 5.93598 6.06036 6.20829 6.21960 6.28519 6.29914 6.40030 6.49422 6.66505 6.73403 6.92704 6.97324 7.30469 7.35559 7.60103 8.19193 8.45674 8.85582 8.95559 9.50877 11.03706 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.003362 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.009065 B = 8327.252231 C = 9070.623811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.131 3.869 3 C -0.157 4.157 4 N -0.585 5.585 5 C 0.215 3.785 6 C -0.523 4.523 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.513 3.487 15 O -0.543 6.543 16 C -0.139 4.139 17 C 0.076 3.924 18 O -0.319 6.319 19 C 0.136 3.864 20 C -0.157 4.157 21 C -0.084 4.084 22 C -0.165 4.165 23 C -0.080 4.080 24 C -0.208 4.208 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.242 -13.332 -15.389 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 C -0.215 4.215 4 N -0.316 5.316 5 C 0.095 3.905 6 C -0.561 4.561 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.211 1.211 13 H -0.191 1.191 14 C 0.299 3.701 15 O -0.421 6.421 16 C -0.179 4.179 17 C 0.001 3.999 18 O -0.232 6.232 19 C 0.090 3.910 20 C -0.175 4.175 21 C -0.102 4.102 22 C -0.183 4.183 23 C -0.098 4.098 24 C -0.226 4.226 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.142 0.858 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.090 -13.360 -14.842 19.970 hybrid contribution -0.626 -0.005 0.928 1.120 sum -0.716 -13.365 -13.914 19.306 Atomic orbital electron populations 1.22172 0.95562 1.01817 1.02545 1.21089 0.94069 0.94529 0.87663 1.22136 1.01793 0.95188 1.02379 1.47997 1.49169 1.26272 1.08180 1.19646 0.96414 0.95178 0.79293 1.21324 1.09243 1.22495 1.03050 0.90527 1.24852 0.96062 0.94764 0.97367 1.69892 1.34579 1.28350 1.20767 0.86899 0.83437 0.78241 0.81394 1.19989 1.21133 1.19122 1.19963 0.79157 0.81059 0.89886 1.90687 1.53392 1.58351 1.39701 1.21528 1.01291 0.97662 0.97452 1.22499 0.99645 0.95779 0.82014 1.85970 1.64526 1.40740 1.31991 1.19036 0.91061 0.86702 0.94159 1.20447 1.02718 0.98532 0.95836 1.20937 0.96261 0.94558 0.98487 1.21046 1.03193 1.01554 0.92506 1.20985 0.95931 0.94855 0.98036 1.21441 1.03713 0.99464 0.98014 0.91573 0.91902 0.92838 0.90211 0.92393 0.93116 0.90038 0.95002 0.94719 0.92608 0.88149 0.88439 0.91103 0.90830 0.85299 0.85568 0.86113 0.85819 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.17 37.16 0.34 -1.84 16 2 C 0.13 2.01 3.17 -67.93 -0.22 1.79 16 3 C -0.16 -2.55 8.47 37.16 0.31 -2.24 16 4 N -0.58 -11.56 2.39 -167.47 -0.40 -11.96 16 5 C 0.22 5.09 3.66 -5.19 -0.02 5.07 16 6 C -0.52 -14.48 8.38 -34.44 -0.29 -14.77 16 7 H 0.08 2.33 7.87 -52.49 -0.41 1.91 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 10 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 13 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 14 C 0.51 10.02 7.67 -10.99 -0.08 9.94 16 15 O -0.54 -12.80 15.56 5.55 0.09 -12.71 16 16 C -0.14 -1.99 4.38 -27.88 -0.12 -2.12 16 17 C 0.08 1.09 4.03 37.16 0.15 1.24 16 18 O -0.32 -4.40 10.14 -19.42 -0.20 -4.60 16 19 C 0.14 1.77 6.69 -39.22 -0.26 1.51 16 20 C -0.16 -1.74 9.99 -39.43 -0.39 -2.14 16 21 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 22 C -0.16 -1.57 10.04 -39.56 -0.40 -1.97 16 23 C -0.08 -0.85 10.04 -39.61 -0.40 -1.25 16 24 C -0.21 -2.59 9.04 -39.44 -0.36 -2.95 16 25 H 0.07 0.99 6.66 -51.93 -0.35 0.65 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 1.00 5.77 -51.93 -0.30 0.71 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 32 H 0.03 0.72 5.48 -51.93 -0.28 0.44 16 33 H 0.03 0.89 6.85 -51.93 -0.36 0.53 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.10 1.33 7.79 -51.93 -0.40 0.92 16 36 H 0.10 1.17 7.79 -51.93 -0.40 0.77 16 37 H 0.07 1.02 7.62 -51.93 -0.40 0.62 16 38 H 0.07 1.12 7.62 -51.93 -0.40 0.73 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.13 1.67 6.30 -52.48 -0.33 1.33 16 LS Contribution 350.29 15.07 5.28 5.28 Total: -1.00 -32.80 350.29 -7.89 -40.69 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.54 Total: 2.12 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -2.23 Total: -8.97 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.37 Total: -38.44 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.11 Total: -17.31 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.80 -7.89 -40.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.865 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds