Wall clock time and date at job start Tue Mar 31 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46726 * 2 1 4 4 N 1.46493 * 109.47115 * 119.99576 * 2 1 3 5 5 C 1.46501 * 120.00542 * 300.00307 * 4 2 1 6 6 C 1.50699 * 109.47081 * 270.00380 * 5 4 2 7 7 H 1.07994 * 120.00048 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99987 * 179.97438 * 6 5 4 9 9 N 1.31512 * 119.99946 * 179.97438 * 8 6 5 10 10 Si 1.86803 * 119.99741 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47395 * 90.00052 * 10 8 6 12 12 H 1.48504 * 109.46689 * 209.99991 * 10 8 6 13 13 H 1.48501 * 109.47166 * 329.99754 * 10 8 6 14 14 C 1.34775 * 119.99948 * 120.00236 * 4 2 1 15 15 O 1.21286 * 120.00172 * 180.02562 * 14 4 2 16 16 C 1.50700 * 119.99922 * 0.02562 * 14 4 2 17 17 C 1.53001 * 109.47427 * 179.97438 * 16 14 4 18 18 O 1.42902 * 109.47386 * 179.97438 * 17 16 14 19 19 C 1.35898 * 116.99694 * 180.02562 * 18 17 16 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 17 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 H 1.08994 * 109.47135 * 300.00238 * 1 2 3 26 26 H 1.08996 * 109.47138 * 60.00120 * 1 2 3 27 27 H 1.09000 * 109.46893 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47322 * 240.00523 * 2 1 3 29 29 H 1.09004 * 109.47080 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47214 * 299.99833 * 3 2 1 31 31 H 1.08994 * 109.47508 * 59.99990 * 3 2 1 32 32 H 1.09004 * 109.46779 * 29.99870 * 5 4 2 33 33 H 1.08998 * 109.47269 * 149.99700 * 5 4 2 34 34 H 0.97003 * 119.99836 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.47374 * 59.99814 * 16 14 4 36 36 H 1.09006 * 109.46766 * 299.99807 * 16 14 4 37 37 H 1.08999 * 109.46920 * 59.99629 * 17 16 14 38 38 H 1.08998 * 109.47220 * 299.99999 * 17 16 14 39 39 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 40 40 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 41 41 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 42 42 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7031 0.8020 2.9830 7 1 3.5430 1.0359 2.3457 8 6 2.5810 1.4110 4.2140 9 7 3.4877 2.2763 4.6123 10 14 1.1278 1.0068 5.3159 11 1 1.4761 -0.1386 6.1944 12 1 0.7967 2.1888 6.1517 13 1 -0.0447 0.6492 4.4776 14 6 2.7932 -1.7863 1.0726 15 8 3.1971 -2.3582 2.0629 16 6 3.1578 -2.3008 -0.2961 17 6 4.0379 -3.5445 -0.1558 18 8 4.3831 -4.0328 -1.4537 19 6 5.1670 -5.1415 -1.5072 20 6 5.5400 -5.6701 -2.7345 21 6 6.3374 -6.7969 -2.7864 22 6 6.7633 -7.3983 -1.6165 23 6 6.3933 -6.8733 -0.3920 24 6 5.5960 -5.7466 -0.3349 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 0.6904 0.2974 2.4843 33 1 1.6238 -1.0225 3.2291 34 1 3.4020 2.7045 5.4785 35 1 3.7029 -1.5300 -0.8408 36 1 2.2495 -2.5576 -0.8415 37 1 3.4931 -4.3155 0.3891 38 1 4.9460 -3.2873 0.3894 39 1 5.2037 -5.2034 -3.6486 40 1 6.6277 -7.2090 -3.7416 41 1 7.3863 -8.2795 -1.6592 42 1 6.7275 -7.3446 0.5203 43 1 5.3069 -5.3371 0.6217 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530390.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:37 Heat of formation + Delta-G solvation = -72.627261 kcal Electronic energy + Delta-G solvation = -22985.144931 eV Core-core repulsion = 19608.839616 eV Total energy + Delta-G solvation = -3376.305315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30800 -40.73539 -38.40775 -37.65156 -34.92505 -33.31113 -32.60359 -31.88589 -30.68739 -29.74286 -27.98937 -26.05471 -24.15725 -23.40837 -22.84133 -22.32222 -19.72323 -19.22607 -19.06370 -18.09298 -17.43810 -17.03336 -16.85763 -16.59810 -16.24602 -15.76668 -15.32539 -14.93388 -14.72930 -14.61661 -14.40873 -14.32717 -14.21803 -13.76722 -13.61186 -13.35900 -12.97074 -12.88950 -12.75836 -12.64298 -12.47290 -12.36724 -12.28910 -11.92613 -11.80873 -11.80029 -11.67463 -11.52928 -10.80511 -10.74355 -9.95362 -9.45346 -9.18886 -8.31317 -6.33860 0.39100 0.48684 1.31234 1.35069 1.42752 1.68259 1.83487 2.31091 2.52286 2.84856 3.02816 3.55717 3.79107 3.87965 3.92145 3.98490 4.03571 4.24947 4.27174 4.33426 4.41603 4.45943 4.52260 4.66002 4.67845 4.73867 4.80773 4.87970 4.90826 4.93733 5.04618 5.09060 5.09520 5.37325 5.40162 5.47433 5.49408 5.58468 5.60198 5.67067 5.85736 6.26494 6.38116 6.65567 6.68588 7.22040 7.36191 8.85332 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021550 B = 0.003362 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.009065 B = 8327.252231 C = 9070.623811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 C -0.152 4.152 4 N -0.591 5.591 5 C 0.225 3.775 6 C -0.520 4.520 7 H 0.034 0.966 8 C 0.010 3.990 9 N -0.946 5.946 10 Si 0.940 3.060 11 H -0.279 1.279 12 H -0.277 1.277 13 H -0.239 1.239 14 C 0.503 3.497 15 O -0.594 6.594 16 C -0.124 4.124 17 C 0.085 3.915 18 O -0.321 6.321 19 C 0.106 3.894 20 C -0.163 4.163 21 C -0.081 4.081 22 C -0.162 4.162 23 C -0.090 4.090 24 C -0.228 4.228 25 H 0.045 0.955 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.032 0.968 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.015 0.985 34 H 0.266 0.734 35 H 0.117 0.883 36 H 0.133 0.867 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.143 0.857 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.139 0.861 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 -15.001 -18.066 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 C -0.210 4.210 4 N -0.321 5.321 5 C 0.103 3.897 6 C -0.558 4.558 7 H 0.052 0.948 8 C -0.188 4.188 9 N -0.587 5.587 10 Si 0.764 3.236 11 H -0.204 1.204 12 H -0.203 1.203 13 H -0.162 1.162 14 C 0.292 3.708 15 O -0.476 6.476 16 C -0.163 4.163 17 C 0.009 3.991 18 O -0.235 6.235 19 C 0.061 3.939 20 C -0.181 4.181 21 C -0.099 4.099 22 C -0.180 4.180 23 C -0.108 4.108 24 C -0.247 4.247 25 H 0.064 0.936 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.136 0.864 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.151 0.849 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.161 0.839 40 H 0.177 0.823 41 H 0.168 0.832 42 H 0.157 0.843 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.589 -15.027 -17.578 23.180 hybrid contribution -0.021 0.470 1.659 1.724 sum -1.610 -14.558 -15.919 21.632 Atomic orbital electron populations 1.22144 0.93395 1.02787 1.03224 1.21501 0.95808 0.93616 0.86994 1.22075 1.00196 0.96238 1.02495 1.48119 1.49281 1.26596 1.08148 1.19274 0.95761 0.93339 0.81347 1.21511 1.08843 1.22975 1.02514 0.94798 1.25782 0.99241 0.94616 0.99120 1.70046 1.37067 1.30042 1.21541 0.85825 0.80548 0.77900 0.79367 1.20435 1.20264 1.16191 1.20878 0.77987 0.80484 0.91445 1.90658 1.55086 1.59910 1.41937 1.21429 1.02970 0.97781 0.94160 1.22256 0.98694 0.95722 0.82421 1.85922 1.65150 1.41450 1.30964 1.19365 0.92229 0.87080 0.95205 1.20756 1.02798 0.99071 0.95511 1.21373 0.94926 0.93586 0.99995 1.21452 1.02553 1.02029 0.91915 1.21271 0.95595 0.94378 0.99594 1.21501 1.05027 1.00659 0.97538 0.93632 0.88464 0.91722 0.86431 0.94834 0.89071 0.93732 0.93232 0.96681 0.92483 0.86479 0.84887 0.91726 0.92910 0.83906 0.82253 0.83236 0.84313 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 9.17 71.98 0.66 -3.02 16 2 C 0.12 3.50 3.17 44.99 0.14 3.65 16 3 C -0.15 -4.83 8.47 71.98 0.61 -4.22 16 4 N -0.59 -23.21 2.39 -802.15 -1.91 -25.13 16 5 C 0.23 10.78 3.66 85.63 0.31 11.09 16 6 C -0.52 -30.00 8.38 25.60 0.21 -29.79 16 7 H 0.03 2.19 7.87 -2.91 -0.02 2.16 16 8 C 0.01 0.59 5.47 84.66 0.46 1.05 16 9 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 10 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 11 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 13 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 14 C 0.50 19.79 7.67 87.66 0.67 20.46 16 15 O -0.59 -29.15 15.56 -3.05 -0.05 -29.20 16 16 C -0.12 -3.38 4.38 29.85 0.13 -3.25 16 17 C 0.08 2.46 4.03 71.98 0.29 2.75 16 18 O -0.32 -8.69 10.14 -92.40 -0.94 -9.62 16 19 C 0.11 2.73 6.69 22.51 0.15 2.88 16 20 C -0.16 -3.32 9.99 22.37 0.22 -3.10 16 21 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 22 C -0.16 -2.66 10.04 22.28 0.22 -2.44 16 23 C -0.09 -1.85 10.04 22.25 0.22 -1.62 16 24 C -0.23 -5.82 9.04 22.36 0.20 -5.62 16 25 H 0.04 1.25 6.66 -2.39 -0.02 1.24 16 26 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 28 H 0.12 2.49 5.77 -2.39 -0.01 2.48 16 29 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.73 6.92 -2.39 -0.02 1.72 16 32 H 0.05 2.21 5.48 -2.39 -0.01 2.20 16 33 H 0.02 0.79 6.85 -2.39 -0.02 0.77 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.12 2.85 7.79 -2.39 -0.02 2.83 16 36 H 0.13 2.72 7.79 -2.38 -0.02 2.70 16 37 H 0.06 1.93 7.62 -2.39 -0.02 1.91 16 38 H 0.05 1.72 7.62 -2.39 -0.02 1.70 16 39 H 0.14 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 41 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.12 3.23 6.30 -2.91 -0.02 3.21 16 Total: -1.00 -76.60 350.29 4.96 -71.64 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.93 Total: 17.66 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 4.74 Total: -12.26 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -1.61 Total: -84.65 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.98 Total: -38.82 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -76.60 4.96 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530390.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.984 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds