Wall clock time and date at job start Tue Mar 31 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47092 * 2 1 4 4 N 1.46492 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.37105 * 120.00368 * 263.25118 * 4 3 2 6 6 H 1.07997 * 119.99781 * 188.09332 * 5 4 3 7 7 C 1.38948 * 119.99459 * 8.09480 * 5 4 3 8 8 N 1.31414 * 120.00374 * 26.09196 * 7 5 4 9 9 Si 1.86798 * 119.99775 * 206.08579 * 7 5 4 10 10 H 1.48503 * 109.46829 * 84.98886 * 9 7 5 11 11 H 1.48495 * 109.47373 * 204.98998 * 9 7 5 12 12 H 1.48497 * 109.47520 * 324.99248 * 9 7 5 13 13 C 1.34780 * 119.99897 * 83.25109 * 4 3 2 14 14 O 1.21292 * 119.99804 * 0.02562 * 13 4 3 15 15 C 1.50700 * 119.99844 * 179.97438 * 13 4 3 16 16 C 1.53007 * 109.46753 * 180.02562 * 15 13 4 17 17 C 1.50706 * 109.46851 * 180.02562 * 16 15 13 18 18 C 1.38262 * 119.93991 * 269.72369 * 17 16 15 19 19 C 1.38146 * 120.04899 * 180.27911 * 18 17 16 20 20 C 1.38730 * 119.95052 * 0.02562 * 19 18 17 21 21 O 1.35901 * 120.06091 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99523 * 0.02562 * 21 20 19 23 23 C 1.38741 * 119.88490 * 359.97438 * 20 19 18 24 24 C 1.38147 * 119.94251 * 359.97438 * 23 20 19 25 25 H 1.09002 * 109.46846 * 299.99664 * 1 2 3 26 26 H 1.09001 * 109.47113 * 59.99544 * 1 2 3 27 27 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47332 * 240.00528 * 2 1 3 29 29 H 1.08998 * 109.47292 * 119.99701 * 2 1 3 30 30 H 1.09001 * 109.46601 * 60.00081 * 3 2 1 31 31 H 1.08994 * 109.47049 * 300.00701 * 3 2 1 32 32 H 0.96995 * 119.99774 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46930 * 60.00549 * 15 13 4 34 34 H 1.08996 * 109.47778 * 300.00479 * 15 13 4 35 35 H 1.09002 * 109.47118 * 60.00464 * 16 15 13 36 36 H 1.09002 * 109.47343 * 300.00193 * 16 15 13 37 37 H 1.07991 * 119.97813 * 0.26323 * 18 17 16 38 38 H 1.08004 * 120.02340 * 179.97438 * 19 18 17 39 39 H 1.08996 * 109.47735 * 60.00149 * 22 21 20 40 40 H 1.09007 * 109.46640 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.47325 * 299.99082 * 22 21 20 42 42 H 1.07999 * 120.02469 * 179.97438 * 23 20 19 43 43 H 1.07998 * 119.96806 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.5823 1.1800 6 1 5.2619 1.7136 1.1695 7 6 3.5051 1.5549 2.3886 8 7 2.3617 0.9138 2.4816 9 14 4.2098 2.4292 3.8814 10 1 3.8116 3.8596 3.8509 11 1 3.6868 1.7961 5.1186 12 1 5.6911 2.3273 3.8614 13 6 4.1793 1.3052 -1.1582 14 8 3.5732 1.1821 -2.2016 15 6 5.6863 1.3058 -1.1576 16 6 6.1968 1.1366 -2.5901 17 6 7.7039 1.1366 -2.5894 18 6 8.3941 2.3257 -2.7354 19 6 9.7755 2.3276 -2.7409 20 6 10.4703 1.1350 -2.6004 21 8 11.8293 1.1342 -2.6061 22 6 12.4781 2.3981 -2.7603 23 6 9.7753 -0.0568 -2.4541 24 6 8.3939 -0.0532 -2.4481 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.8839 0.8944 3.3255 33 1 6.0497 0.4827 -0.5424 34 1 6.0492 2.2502 -0.7521 35 1 5.8335 1.9600 -3.2050 36 1 5.8340 0.1923 -2.9960 37 1 7.8528 3.2537 -2.8455 38 1 10.3142 3.2567 -2.8554 39 1 12.1890 3.0572 -1.9418 40 1 13.5587 2.2555 -2.7482 41 1 12.1816 2.8453 -3.7091 42 1 10.3139 -0.9865 -2.3449 43 1 7.8525 -0.9807 -2.3338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044372725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:14 Heat of formation + Delta-G solvation = -54.596135 kcal Electronic energy + Delta-G solvation = -22916.256422 eV Core-core repulsion = 19540.732995 eV Total energy + Delta-G solvation = -3375.523427 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10878 -38.66965 -37.59963 -35.22733 -33.04217 -32.23544 -31.38223 -31.00071 -29.01160 -27.37067 -25.82220 -24.73412 -23.15109 -22.52904 -20.85889 -20.20592 -18.98776 -18.14973 -16.77739 -16.28564 -16.08919 -15.80860 -15.05009 -14.57182 -14.36815 -14.28383 -14.04154 -13.70505 -13.48832 -13.35767 -12.99843 -12.63639 -12.48059 -12.14486 -12.02119 -11.68406 -11.50005 -11.33854 -11.10133 -10.93409 -10.81533 -10.78021 -10.65596 -10.42331 -10.31897 -10.24515 -10.19203 -9.46262 -8.91278 -8.82741 -8.37308 -7.92679 -7.75970 -6.40471 -3.83874 1.43069 1.52219 3.10292 3.21631 3.21813 3.22575 3.84238 3.93766 4.08535 4.77880 4.81862 4.90880 4.97641 5.00902 5.02306 5.25447 5.28640 5.45114 5.51251 5.69895 5.82384 5.90817 6.06555 6.11598 6.17254 6.19889 6.35905 6.39496 6.46166 6.49299 6.54779 6.73697 6.74621 6.88275 6.92148 6.93052 7.01404 7.08178 7.36358 7.39034 7.48646 7.74524 7.81321 8.44622 9.08299 9.57463 9.98918 10.58861 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.003681 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.441111 B = 7604.373581 C = 8709.602833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.139 3.861 4 N -0.440 5.440 5 C -0.339 4.339 6 H 0.100 0.900 7 C 0.039 3.961 8 N -0.849 5.849 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.271 1.271 13 C 0.449 3.551 14 O -0.614 6.614 15 C -0.112 4.112 16 C -0.060 4.060 17 C -0.104 4.104 18 C -0.079 4.079 19 C -0.206 4.206 20 C 0.111 3.889 21 O -0.322 6.322 22 C 0.029 3.971 23 C -0.149 4.149 24 C -0.078 4.078 25 H 0.051 0.949 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.034 0.966 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.034 0.966 32 H 0.268 0.732 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.054 0.946 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.127 0.873 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 1.870 -5.668 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.016 3.984 4 N -0.157 5.157 5 C -0.467 4.467 6 H 0.118 0.882 7 C -0.166 4.166 8 N -0.487 5.487 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.238 3.762 14 O -0.502 6.502 15 C -0.152 4.152 16 C -0.098 4.098 17 C -0.104 4.104 18 C -0.097 4.097 19 C -0.225 4.225 20 C 0.066 3.934 21 O -0.236 6.236 22 C -0.067 4.067 23 C -0.168 4.168 24 C -0.096 4.096 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.145 0.855 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.973 1.616 -5.966 13.475 hybrid contribution 0.354 0.724 1.012 1.294 sum 12.327 2.340 -4.955 13.490 Atomic orbital electron populations 1.21589 0.97630 0.99789 1.00365 1.21731 0.93708 0.98515 1.01802 1.21263 0.80233 0.96808 1.00132 1.43847 1.05501 1.60794 1.05592 1.19661 0.93656 1.50332 0.83006 0.88199 1.25149 0.96380 0.96276 0.98827 1.70155 1.16475 1.35524 1.26549 0.86195 0.79400 0.79968 0.80641 1.20327 1.21063 1.19552 1.20071 0.89319 0.82894 0.83881 1.90514 1.70389 1.57264 1.31985 1.21349 0.94381 1.03198 0.96260 1.20309 0.88498 1.03675 0.97285 1.20054 0.96624 0.92884 1.00828 1.20890 0.93031 0.98058 0.97683 1.21178 0.95402 0.96877 1.09005 1.18999 0.82002 0.94386 0.97977 1.86040 1.16893 1.32298 1.88328 1.23004 0.97757 0.84850 1.01047 1.20396 0.93794 0.96203 1.06406 1.20940 0.92744 0.98295 0.97592 0.93023 0.94418 0.94274 0.94687 0.88936 0.88865 0.94719 0.92137 0.90134 0.90482 0.90858 0.90740 0.85736 0.85823 0.92715 0.88542 0.92827 0.85499 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.91 37.16 0.37 -2.25 16 2 C -0.12 -2.75 5.74 -26.73 -0.15 -2.90 16 3 C 0.14 3.40 4.52 -4.04 -0.02 3.38 16 4 N -0.44 -11.08 2.64 -114.81 -0.30 -11.39 16 5 C -0.34 -8.45 9.25 -14.93 -0.14 -8.59 16 6 H 0.10 2.37 6.47 -52.49 -0.34 2.03 16 7 C 0.04 0.95 4.88 -17.47 -0.09 0.87 16 8 N -0.85 -21.09 8.72 55.50 0.48 -20.61 16 9 Si 0.91 19.07 29.63 -169.99 -5.04 14.04 16 10 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 11 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 12 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 13 C 0.45 10.83 7.58 -10.98 -0.08 10.75 16 14 O -0.61 -16.12 15.68 5.55 0.09 -16.03 16 15 C -0.11 -2.19 4.07 -27.88 -0.11 -2.30 16 16 C -0.06 -1.02 4.63 -27.88 -0.13 -1.15 16 17 C -0.10 -1.54 5.13 -104.60 -0.54 -2.08 16 18 C -0.08 -1.07 9.69 -39.61 -0.38 -1.46 16 19 C -0.21 -2.58 9.04 -39.43 -0.36 -2.94 16 20 C 0.11 1.47 6.69 -39.21 -0.26 1.21 16 21 O -0.32 -3.90 10.50 -19.43 -0.20 -4.10 16 22 C 0.03 0.23 9.81 101.05 0.99 1.22 16 23 C -0.15 -1.98 9.99 -39.43 -0.39 -2.38 16 24 C -0.08 -1.08 9.69 -39.61 -0.38 -1.46 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 2.32 6.42 -51.93 -0.33 1.98 16 30 H 0.09 2.36 5.81 -51.93 -0.30 2.05 16 31 H 0.03 0.86 7.63 -51.93 -0.40 0.46 16 32 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 33 H 0.08 1.56 8.01 -51.93 -0.42 1.15 16 34 H 0.08 1.45 7.79 -51.93 -0.40 1.05 16 35 H 0.07 1.27 8.04 -51.93 -0.42 0.86 16 36 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 37 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.12 1.25 6.30 -52.48 -0.33 0.91 16 39 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -28.71 352.14 -8.01 -36.73 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.67 Total: 6.15 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.68 Total: -10.09 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.18 Total: -32.00 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.12 Total: -20.13 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.04 Total: 14.04 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.71 -8.01 -36.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.869 kcal (2) G-P(sol) polarization free energy of solvation -28.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds