Wall clock time and date at job start Tue Mar 31 2020 06:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47092 * 2 1 4 4 N 1.46492 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.37105 * 120.00368 * 263.25118 * 4 3 2 6 6 H 1.07997 * 119.99781 * 188.09332 * 5 4 3 7 7 C 1.38948 * 119.99459 * 8.09480 * 5 4 3 8 8 N 1.31414 * 120.00374 * 26.09196 * 7 5 4 9 9 Si 1.86798 * 119.99775 * 206.08579 * 7 5 4 10 10 H 1.48503 * 109.46829 * 84.98886 * 9 7 5 11 11 H 1.48495 * 109.47373 * 204.98998 * 9 7 5 12 12 H 1.48497 * 109.47520 * 324.99248 * 9 7 5 13 13 C 1.34780 * 119.99897 * 83.25109 * 4 3 2 14 14 O 1.21292 * 119.99804 * 0.02562 * 13 4 3 15 15 C 1.50700 * 119.99844 * 179.97438 * 13 4 3 16 16 C 1.53007 * 109.46753 * 180.02562 * 15 13 4 17 17 C 1.50706 * 109.46851 * 180.02562 * 16 15 13 18 18 C 1.38262 * 119.93991 * 269.72369 * 17 16 15 19 19 C 1.38146 * 120.04899 * 180.27911 * 18 17 16 20 20 C 1.38730 * 119.95052 * 0.02562 * 19 18 17 21 21 O 1.35901 * 120.06091 * 179.97438 * 20 19 18 22 22 C 1.42898 * 116.99523 * 0.02562 * 21 20 19 23 23 C 1.38741 * 119.88490 * 359.97438 * 20 19 18 24 24 C 1.38147 * 119.94251 * 359.97438 * 23 20 19 25 25 H 1.09002 * 109.46846 * 299.99664 * 1 2 3 26 26 H 1.09001 * 109.47113 * 59.99544 * 1 2 3 27 27 H 1.09001 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47332 * 240.00528 * 2 1 3 29 29 H 1.08998 * 109.47292 * 119.99701 * 2 1 3 30 30 H 1.09001 * 109.46601 * 60.00081 * 3 2 1 31 31 H 1.08994 * 109.47049 * 300.00701 * 3 2 1 32 32 H 0.96995 * 119.99774 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.46930 * 60.00549 * 15 13 4 34 34 H 1.08996 * 109.47778 * 300.00479 * 15 13 4 35 35 H 1.09002 * 109.47118 * 60.00464 * 16 15 13 36 36 H 1.09002 * 109.47343 * 300.00193 * 16 15 13 37 37 H 1.07991 * 119.97813 * 0.26323 * 18 17 16 38 38 H 1.08004 * 120.02340 * 179.97438 * 19 18 17 39 39 H 1.08996 * 109.47735 * 60.00149 * 22 21 20 40 40 H 1.09007 * 109.46640 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.47325 * 299.99082 * 22 21 20 42 42 H 1.07999 * 120.02469 * 179.97438 * 23 20 19 43 43 H 1.07998 * 119.96806 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1900 1.5823 1.1800 6 1 5.2619 1.7136 1.1695 7 6 3.5051 1.5549 2.3886 8 7 2.3617 0.9138 2.4816 9 14 4.2098 2.4292 3.8814 10 1 3.8116 3.8596 3.8509 11 1 3.6868 1.7961 5.1186 12 1 5.6911 2.3273 3.8614 13 6 4.1793 1.3052 -1.1582 14 8 3.5732 1.1821 -2.2016 15 6 5.6863 1.3058 -1.1576 16 6 6.1968 1.1366 -2.5901 17 6 7.7039 1.1366 -2.5894 18 6 8.3941 2.3257 -2.7354 19 6 9.7755 2.3276 -2.7409 20 6 10.4703 1.1350 -2.6004 21 8 11.8293 1.1342 -2.6061 22 6 12.4781 2.3981 -2.7603 23 6 9.7753 -0.0568 -2.4541 24 6 8.3939 -0.0532 -2.4481 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.8839 0.8944 3.3255 33 1 6.0497 0.4827 -0.5424 34 1 6.0492 2.2502 -0.7521 35 1 5.8335 1.9600 -3.2050 36 1 5.8340 0.1923 -2.9960 37 1 7.8528 3.2537 -2.8455 38 1 10.3142 3.2567 -2.8554 39 1 12.1890 3.0572 -1.9418 40 1 13.5587 2.2555 -2.7482 41 1 12.1816 2.8453 -3.7091 42 1 10.3139 -0.9865 -2.3449 43 1 7.8525 -0.9807 -2.3338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044372725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:14 Heat of formation + Delta-G solvation = -68.387196 kcal Electronic energy + Delta-G solvation = -22916.854447 eV Core-core repulsion = 19540.732995 eV Total energy + Delta-G solvation = -3376.121452 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10034 -40.47248 -38.65577 -37.10614 -34.54051 -33.92749 -33.26277 -32.00273 -30.22011 -28.26645 -27.52497 -26.45137 -24.60688 -23.53775 -22.36173 -21.68176 -20.86851 -19.05569 -18.61279 -17.94216 -17.22948 -16.60138 -16.38062 -16.21404 -16.09841 -15.88315 -15.37922 -15.09499 -14.79041 -14.48935 -14.42657 -14.13992 -13.88608 -13.60950 -13.32356 -13.12135 -12.91333 -12.77447 -12.60029 -12.53689 -12.24068 -12.17834 -12.08994 -11.98704 -11.95268 -11.73895 -11.58982 -11.35182 -10.74439 -10.26177 -9.92654 -9.69741 -9.00034 -8.27590 -5.77949 0.41785 0.46360 1.43060 1.51252 1.59699 2.06953 2.32376 2.41422 2.77753 3.08652 3.13981 3.86846 3.94707 4.01221 4.22062 4.31478 4.38215 4.39515 4.42077 4.48329 4.49825 4.56988 4.59865 4.69478 4.74071 4.76411 4.81334 4.98373 5.01945 5.08407 5.17987 5.23359 5.29411 5.29613 5.34871 5.43018 5.47845 5.58199 5.78366 5.82697 5.84724 5.89360 6.48285 6.52849 7.16987 7.66155 8.08082 8.72029 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017623 B = 0.003681 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.441111 B = 7604.373581 C = 8709.602833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.108 4.108 3 C 0.140 3.860 4 N -0.452 5.452 5 C -0.364 4.364 6 H 0.108 0.892 7 C 0.003 3.997 8 N -0.868 5.868 9 Si 0.979 3.021 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.435 3.565 14 O -0.643 6.643 15 C -0.099 4.099 16 C -0.046 4.046 17 C -0.121 4.121 18 C -0.083 4.083 19 C -0.205 4.205 20 C 0.109 3.891 21 O -0.335 6.335 22 C 0.018 3.982 23 C -0.159 4.159 24 C -0.083 4.083 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.059 0.941 28 H 0.015 0.985 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.025 0.975 32 H 0.271 0.729 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.135 0.865 38 H 0.150 0.850 39 H 0.062 0.938 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.140 0.860 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.947 2.637 -5.027 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C 0.017 3.983 4 N -0.169 5.169 5 C -0.491 4.491 6 H 0.126 0.874 7 C -0.201 4.201 8 N -0.505 5.505 9 Si 0.804 3.196 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.188 1.188 13 C 0.225 3.775 14 O -0.533 6.533 15 C -0.139 4.139 16 C -0.084 4.084 17 C -0.122 4.122 18 C -0.101 4.101 19 C -0.223 4.223 20 C 0.063 3.937 21 O -0.249 6.249 22 C -0.076 4.076 23 C -0.177 4.177 24 C -0.101 4.101 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.153 0.847 38 H 0.168 0.832 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.083 0.917 42 H 0.158 0.842 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.630 2.382 -5.324 14.825 hybrid contribution -0.112 0.483 0.802 0.943 sum 13.518 2.865 -4.522 14.539 Atomic orbital electron populations 1.21507 0.94602 1.01388 1.00965 1.21577 0.96363 0.97030 0.99695 1.21230 0.80601 0.97467 0.99035 1.44110 1.05792 1.60739 1.06231 1.19970 0.94287 1.51587 0.83225 0.87416 1.25937 0.96829 0.96176 1.01142 1.70236 1.17331 1.35573 1.27357 0.85155 0.78986 0.78400 0.77084 1.20283 1.20944 1.18786 1.20857 0.91195 0.82229 0.83205 1.90477 1.71467 1.58497 1.32844 1.21272 0.91004 1.03522 0.98101 1.20104 0.90292 1.02691 0.95313 1.19879 0.95091 0.94031 1.03152 1.21058 0.93756 0.97965 0.97365 1.21421 0.94946 0.97862 1.08095 1.19183 0.82814 0.94511 0.97145 1.86032 1.16165 1.34671 1.88058 1.23329 0.98823 0.83571 1.01904 1.20589 0.93596 0.97171 1.06372 1.21040 0.93282 0.98267 0.97554 0.92759 0.93412 0.92198 0.96576 0.90941 0.89695 0.95699 0.91859 0.90102 0.89638 0.91568 0.91932 0.84736 0.83239 0.91977 0.86248 0.91738 0.84180 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.80 9.91 71.98 0.71 -4.09 16 2 C -0.11 -5.08 5.74 30.60 0.18 -4.90 16 3 C 0.14 7.02 4.52 86.38 0.39 7.41 16 4 N -0.45 -23.20 2.64 -635.55 -1.68 -24.88 16 5 C -0.36 -18.18 9.25 84.04 0.78 -17.40 16 6 H 0.11 5.08 6.47 -2.91 -0.02 5.06 16 7 C 0.00 0.15 4.88 84.93 0.41 0.56 16 8 N -0.87 -43.06 8.72 21.66 0.19 -42.87 16 9 Si 0.98 38.47 29.63 68.60 2.03 40.50 16 10 H -0.28 -10.84 7.11 99.48 0.71 -10.14 16 11 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 12 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 13 C 0.43 21.45 7.58 87.66 0.66 22.12 16 14 O -0.64 -34.78 15.68 -3.07 -0.05 -34.83 16 15 C -0.10 -3.92 4.07 29.85 0.12 -3.80 16 16 C -0.05 -1.59 4.63 29.85 0.14 -1.46 16 17 C -0.12 -3.56 5.13 -19.85 -0.10 -3.66 16 18 C -0.08 -2.17 9.69 22.25 0.22 -1.95 16 19 C -0.20 -4.69 9.04 22.37 0.20 -4.49 16 20 C 0.11 2.67 6.69 22.51 0.15 2.82 16 21 O -0.34 -7.37 10.50 -92.43 -0.97 -8.34 16 22 C 0.02 0.24 9.81 113.37 1.11 1.35 16 23 C -0.16 -4.02 9.99 22.37 0.22 -3.80 16 24 C -0.08 -2.28 9.69 22.25 0.22 -2.06 16 25 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 3.70 6.42 -2.39 -0.02 3.68 16 30 H 0.08 4.37 5.81 -2.39 -0.01 4.36 16 31 H 0.02 1.26 7.63 -2.39 -0.02 1.24 16 32 H 0.27 12.72 8.31 -92.71 -0.77 11.95 16 33 H 0.08 3.17 8.01 -2.39 -0.02 3.15 16 34 H 0.09 3.21 7.79 -2.39 -0.02 3.19 16 35 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 36 H 0.06 2.27 8.04 -2.39 -0.02 2.25 16 37 H 0.13 3.14 8.06 -2.92 -0.02 3.12 16 38 H 0.15 2.55 6.30 -2.91 -0.02 2.53 16 39 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 40 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.06 0.71 7.66 -2.39 -0.02 0.70 16 42 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 43 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -61.39 352.14 5.92 -55.46 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.99 Total: 28.30 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 5.41 Total: -13.36 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -1.49 Total: -67.75 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.02 Total: -43.16 kcal Atomic # 14 Polarization: 38.47 SS G_CDS: 2.03 Total: 40.50 kcal Total: -61.39 5.92 -55.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044372725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.924 kcal (2) G-P(sol) polarization free energy of solvation -61.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds