Wall clock time and date at job start Tue Mar 31 2020 06:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47119 * 2 1 4 4 N 1.46493 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99812 * 264.76363 * 4 3 2 6 6 H 1.08002 * 119.99848 * 138.85495 * 5 4 3 7 7 C 1.38955 * 119.99927 * 318.86093 * 5 4 3 8 8 N 1.31410 * 119.99971 * 341.81804 * 7 5 4 9 9 Si 1.86798 * 119.99809 * 161.82415 * 7 5 4 10 10 H 1.48502 * 109.47212 * 89.99745 * 9 7 5 11 11 H 1.48499 * 109.47228 * 209.99727 * 9 7 5 12 12 H 1.48498 * 109.47448 * 329.99670 * 9 7 5 13 13 C 1.34781 * 120.00397 * 84.76673 * 4 3 2 14 14 O 1.21289 * 119.99951 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99573 * 0.02562 * 13 4 3 16 16 C 1.53001 * 109.46634 * 180.02562 * 15 13 4 17 17 O 1.42899 * 109.47033 * 179.97438 * 16 15 13 18 18 C 1.35904 * 117.00171 * 180.02562 * 17 16 15 19 19 C 1.38749 * 120.05430 * 359.72534 * 18 17 16 20 20 C 1.38125 * 119.94309 * 179.70737 * 19 18 17 21 21 C 1.38286 * 120.05530 * 0.58443 * 20 19 18 22 22 C 1.38241 * 120.10855 * 359.69134 * 21 20 19 23 23 C 1.50705 * 119.96884 * 179.97438 * 22 21 20 24 24 C 1.38162 * 120.05984 * 0.02562 * 22 21 20 25 25 H 1.08995 * 109.47201 * 60.00443 * 1 2 3 26 26 H 1.09007 * 109.46816 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47183 * 300.00135 * 1 2 3 28 28 H 1.08997 * 109.47183 * 239.99865 * 2 1 3 29 29 H 1.08995 * 109.47201 * 119.99556 * 2 1 3 30 30 H 1.09001 * 109.47244 * 59.99375 * 3 2 1 31 31 H 1.09009 * 109.46847 * 299.99942 * 3 2 1 32 32 H 0.97002 * 120.00056 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47510 * 60.00130 * 15 13 4 34 34 H 1.09002 * 109.46990 * 299.99545 * 15 13 4 35 35 H 1.08994 * 109.47515 * 299.99818 * 16 15 13 36 36 H 1.08999 * 109.47127 * 59.99821 * 16 15 13 37 37 H 1.07998 * 120.03110 * 359.97249 * 19 18 17 38 38 H 1.07997 * 119.97369 * 180.30048 * 20 19 18 39 39 H 1.07995 * 119.94572 * 179.70408 * 21 20 19 40 40 H 1.08996 * 109.47451 * 270.02270 * 23 22 21 41 41 H 1.09003 * 109.47008 * 30.02583 * 23 22 21 42 42 H 1.09007 * 109.46806 * 150.02275 * 23 22 21 43 43 H 1.07999 * 120.02963 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5507 1.1815 6 1 5.0710 0.9484 1.3522 7 6 3.7538 2.4352 2.1600 8 7 2.9284 3.4080 1.8450 9 14 4.3397 2.2416 3.9231 10 1 5.5843 3.0273 4.1202 11 1 3.2904 2.7355 4.8505 12 1 4.6103 0.8080 4.2002 13 6 4.1785 1.3362 -1.1632 14 8 5.3914 1.3367 -1.1637 15 6 3.4244 1.2180 -2.4626 16 6 4.4183 1.1113 -3.6210 17 8 3.7033 0.9986 -4.8531 18 6 4.4431 0.8936 -5.9884 19 6 5.8288 0.9047 -5.9183 20 6 6.5784 0.7918 -7.0730 21 6 5.9489 0.6799 -8.2992 22 6 4.5685 0.6743 -8.3721 23 6 3.8858 0.5528 -9.7101 24 6 3.8141 0.7811 -7.2195 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 2.6235 4.0257 2.5279 33 1 2.7981 2.0992 -2.6008 34 1 2.7975 0.3266 -2.4390 35 1 5.0456 2.0023 -3.6448 36 1 5.0443 0.2299 -3.4826 37 1 6.3209 0.9973 -4.9614 38 1 7.6570 0.7956 -7.0185 39 1 6.5368 0.5965 -9.2013 40 1 3.7223 1.5468 -10.1263 41 1 4.5140 -0.0259 -10.3873 42 1 2.9271 0.0493 -9.5845 43 1 2.7357 0.7763 -7.2770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044379539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:45 Heat of formation + Delta-G solvation = -63.444305 kcal Electronic energy + Delta-G solvation = -22779.871242 eV Core-core repulsion = 19403.964130 eV Total energy + Delta-G solvation = -3375.907112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08119 -38.72094 -37.50946 -35.32647 -32.93989 -32.55814 -31.63481 -31.13824 -29.56321 -27.06683 -25.99370 -24.99780 -23.29806 -22.50413 -21.05433 -20.74428 -18.82999 -17.71451 -16.86252 -16.23770 -15.99635 -15.85203 -15.48912 -14.85712 -14.39157 -14.21039 -14.10775 -13.82202 -13.67483 -13.30306 -13.19032 -12.90046 -12.65062 -12.23980 -12.19286 -11.70254 -11.60680 -11.53324 -11.45159 -11.36538 -11.19509 -10.99230 -10.71909 -10.57681 -10.48256 -10.35792 -10.25530 -9.92718 -8.94767 -8.80616 -8.49676 -8.11512 -7.45720 -6.35034 -4.03901 1.31051 1.47316 3.15974 3.22644 3.25637 3.32563 3.75809 3.85354 4.15729 4.74396 4.80265 4.88162 4.98940 5.09195 5.16854 5.31049 5.33386 5.36194 5.43361 5.47382 5.56334 5.62291 5.67070 5.69439 5.74348 5.86805 6.03558 6.08036 6.14500 6.18629 6.28155 6.37993 6.38759 6.45611 6.46706 6.54943 6.59818 6.82069 6.89314 7.21659 7.55690 7.56741 8.25890 8.46724 9.14608 9.35175 9.95881 10.70062 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.003164 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.144098 B = 8847.971972 C = 9671.224202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.107 3.893 4 N -0.437 5.437 5 C -0.311 4.311 6 H 0.088 0.912 7 C 0.039 3.961 8 N -0.870 5.870 9 Si 0.918 3.082 10 H -0.277 1.277 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.466 3.534 14 O -0.584 6.584 15 C -0.134 4.134 16 C 0.079 3.921 17 O -0.319 6.319 18 C 0.143 3.857 19 C -0.213 4.213 20 C -0.076 4.076 21 C -0.167 4.167 22 C -0.053 4.053 23 C -0.113 4.113 24 C -0.159 4.159 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.268 0.732 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 -5.106 -15.506 16.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C -0.017 4.017 4 N -0.156 5.156 5 C -0.439 4.439 6 H 0.106 0.894 7 C -0.165 4.165 8 N -0.507 5.507 9 Si 0.744 3.256 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.468 6.468 15 C -0.175 4.175 16 C 0.004 3.996 17 O -0.233 6.233 18 C 0.097 3.903 19 C -0.232 4.232 20 C -0.095 4.095 21 C -0.185 4.185 22 C -0.054 4.054 23 C -0.169 4.169 24 C -0.178 4.178 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.145 -4.933 -15.335 16.251 hybrid contribution 0.334 0.090 1.052 1.107 sum -1.811 -4.843 -14.283 15.190 Atomic orbital electron populations 1.21679 0.96265 1.00738 1.01610 1.21991 0.94994 0.99251 1.01755 1.21575 0.82101 0.94362 1.03653 1.43402 1.04536 1.62973 1.04659 1.19364 1.12075 1.21608 0.90804 0.89414 1.25432 0.96965 0.93518 1.00593 1.69925 1.33387 1.13361 1.34071 0.86078 0.78467 0.78909 0.82105 1.20247 1.20798 1.19367 1.20036 0.87894 0.82172 0.84557 1.90526 1.14048 1.55287 1.86938 1.21531 0.98960 1.04286 0.92680 1.22530 0.94504 1.02448 0.80087 1.85996 1.36279 1.87357 1.13634 1.19028 0.90044 0.94522 0.86708 1.21425 0.93066 1.08454 1.00270 1.20935 0.99674 0.96928 0.91923 1.20877 0.93880 1.06090 0.97662 1.19658 0.93557 0.97471 0.94667 1.20786 1.00436 1.02283 0.93420 1.20276 1.00218 1.07889 0.89403 0.93078 0.93412 0.92742 0.93093 0.91666 0.87727 0.93216 0.92210 0.89090 0.89366 0.91227 0.91371 0.84953 0.85901 0.86259 0.91050 0.91484 0.91431 0.85391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.14 -2.50 6.17 -26.73 -0.16 -2.66 16 3 C 0.11 2.28 4.69 -4.04 -0.02 2.26 16 4 N -0.44 -10.92 2.50 -114.81 -0.29 -11.21 16 5 C -0.31 -8.52 8.84 -14.93 -0.13 -8.65 16 6 H 0.09 2.51 7.82 -52.49 -0.41 2.10 16 7 C 0.04 1.04 4.95 -17.47 -0.09 0.95 16 8 N -0.87 -23.31 11.61 55.50 0.64 -22.67 16 9 Si 0.92 20.47 29.59 -169.99 -5.03 15.44 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 C 0.47 11.23 7.59 -10.99 -0.08 11.15 16 14 O -0.58 -15.98 15.89 5.55 0.09 -15.89 16 15 C -0.13 -2.52 4.67 -27.88 -0.13 -2.65 16 16 C 0.08 1.39 4.03 37.16 0.15 1.54 16 17 O -0.32 -5.27 10.14 -19.44 -0.20 -5.46 16 18 C 0.14 2.16 6.69 -39.22 -0.26 1.90 16 19 C -0.21 -3.04 9.04 -39.43 -0.36 -3.40 16 20 C -0.08 -0.92 10.04 -39.61 -0.40 -1.32 16 21 C -0.17 -1.84 9.70 -39.56 -0.38 -2.22 16 22 C -0.05 -0.60 5.88 -104.65 -0.62 -1.21 16 23 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 24 C -0.16 -2.08 9.64 -39.43 -0.38 -2.46 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.05 0.86 6.60 -51.93 -0.34 0.52 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.10 2.46 5.76 -51.93 -0.30 2.16 16 31 H 0.05 0.98 6.66 -51.92 -0.35 0.63 16 32 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.09 1.63 7.41 -51.93 -0.38 1.25 16 34 H 0.09 1.50 6.54 -51.93 -0.34 1.16 16 35 H 0.07 1.26 7.61 -51.93 -0.40 0.87 16 36 H 0.07 1.20 7.63 -51.93 -0.40 0.81 16 37 H 0.13 1.91 6.30 -52.49 -0.33 1.58 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 42 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 43 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 354.59 15.07 5.34 5.34 Total: -1.00 -30.65 354.59 -8.17 -38.82 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.60 Total: 4.66 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -2.13 Total: -9.02 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.36 Total: -33.88 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.11 Total: -21.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.65 -8.17 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044379539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.625 kcal (2) G-P(sol) polarization free energy of solvation -30.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds