Wall clock time and date at job start Tue Mar 31 2020 06:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47119 * 2 1 4 4 N 1.46493 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99812 * 264.76363 * 4 3 2 6 6 H 1.08002 * 119.99848 * 138.85495 * 5 4 3 7 7 C 1.38955 * 119.99927 * 318.86093 * 5 4 3 8 8 N 1.31410 * 119.99971 * 341.81804 * 7 5 4 9 9 Si 1.86798 * 119.99809 * 161.82415 * 7 5 4 10 10 H 1.48502 * 109.47212 * 89.99745 * 9 7 5 11 11 H 1.48499 * 109.47228 * 209.99727 * 9 7 5 12 12 H 1.48498 * 109.47448 * 329.99670 * 9 7 5 13 13 C 1.34781 * 120.00397 * 84.76673 * 4 3 2 14 14 O 1.21289 * 119.99951 * 179.97438 * 13 4 3 15 15 C 1.50697 * 119.99573 * 0.02562 * 13 4 3 16 16 C 1.53001 * 109.46634 * 180.02562 * 15 13 4 17 17 O 1.42899 * 109.47033 * 179.97438 * 16 15 13 18 18 C 1.35904 * 117.00171 * 180.02562 * 17 16 15 19 19 C 1.38749 * 120.05430 * 359.72534 * 18 17 16 20 20 C 1.38125 * 119.94309 * 179.70737 * 19 18 17 21 21 C 1.38286 * 120.05530 * 0.58443 * 20 19 18 22 22 C 1.38241 * 120.10855 * 359.69134 * 21 20 19 23 23 C 1.50705 * 119.96884 * 179.97438 * 22 21 20 24 24 C 1.38162 * 120.05984 * 0.02562 * 22 21 20 25 25 H 1.08995 * 109.47201 * 60.00443 * 1 2 3 26 26 H 1.09007 * 109.46816 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47183 * 300.00135 * 1 2 3 28 28 H 1.08997 * 109.47183 * 239.99865 * 2 1 3 29 29 H 1.08995 * 109.47201 * 119.99556 * 2 1 3 30 30 H 1.09001 * 109.47244 * 59.99375 * 3 2 1 31 31 H 1.09009 * 109.46847 * 299.99942 * 3 2 1 32 32 H 0.97002 * 120.00056 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47510 * 60.00130 * 15 13 4 34 34 H 1.09002 * 109.46990 * 299.99545 * 15 13 4 35 35 H 1.08994 * 109.47515 * 299.99818 * 16 15 13 36 36 H 1.08999 * 109.47127 * 59.99821 * 16 15 13 37 37 H 1.07998 * 120.03110 * 359.97249 * 19 18 17 38 38 H 1.07997 * 119.97369 * 180.30048 * 20 19 18 39 39 H 1.07995 * 119.94572 * 179.70408 * 21 20 19 40 40 H 1.08996 * 109.47451 * 270.02270 * 23 22 21 41 41 H 1.09003 * 109.47008 * 30.02583 * 23 22 21 42 42 H 1.09007 * 109.46806 * 150.02275 * 23 22 21 43 43 H 1.07999 * 120.02963 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1909 1.5507 1.1815 6 1 5.0710 0.9484 1.3522 7 6 3.7538 2.4352 2.1600 8 7 2.9284 3.4080 1.8450 9 14 4.3397 2.2416 3.9231 10 1 5.5843 3.0273 4.1202 11 1 3.2904 2.7355 4.8505 12 1 4.6103 0.8080 4.2002 13 6 4.1785 1.3362 -1.1632 14 8 5.3914 1.3367 -1.1637 15 6 3.4244 1.2180 -2.4626 16 6 4.4183 1.1113 -3.6210 17 8 3.7033 0.9986 -4.8531 18 6 4.4431 0.8936 -5.9884 19 6 5.8288 0.9047 -5.9183 20 6 6.5784 0.7918 -7.0730 21 6 5.9489 0.6799 -8.2992 22 6 4.5685 0.6743 -8.3721 23 6 3.8858 0.5528 -9.7101 24 6 3.8141 0.7811 -7.2195 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 2.6235 4.0257 2.5279 33 1 2.7981 2.0992 -2.6008 34 1 2.7975 0.3266 -2.4390 35 1 5.0456 2.0023 -3.6448 36 1 5.0443 0.2299 -3.4826 37 1 6.3209 0.9973 -4.9614 38 1 7.6570 0.7956 -7.0185 39 1 6.5368 0.5965 -9.2013 40 1 3.7223 1.5468 -10.1263 41 1 4.5140 -0.0259 -10.3873 42 1 2.9271 0.0493 -9.5845 43 1 2.7357 0.7763 -7.2770 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044379539.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:44 Heat of formation + Delta-G solvation = -79.656249 kcal Electronic energy + Delta-G solvation = -22780.574245 eV Core-core repulsion = 19403.964130 eV Total energy + Delta-G solvation = -3376.610115 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.23965 -40.48268 -38.64817 -37.17287 -34.67849 -33.44951 -33.12465 -32.87485 -30.70977 -27.98572 -27.66183 -26.60755 -24.85922 -23.49086 -22.49346 -21.88141 -20.60586 -19.03559 -18.68728 -17.75932 -17.41499 -16.94610 -16.84665 -16.60495 -16.02854 -15.74820 -15.39079 -15.16252 -14.61406 -14.45971 -14.43763 -14.15980 -14.08380 -13.65939 -13.40860 -13.14737 -12.99357 -12.95235 -12.76840 -12.63984 -12.53592 -12.43426 -12.23047 -12.08852 -11.98842 -11.76741 -11.71685 -11.46718 -10.90293 -10.46675 -9.74571 -9.42765 -9.16853 -8.36452 -6.13582 0.35005 0.47806 1.36357 1.40005 1.52325 1.93923 1.99682 2.32196 2.78761 2.98238 3.15462 3.72294 3.88481 3.90305 3.94454 4.07956 4.13451 4.17113 4.31630 4.33660 4.41985 4.49041 4.54684 4.58260 4.71472 4.72951 4.81545 4.87157 4.89097 4.99115 5.04831 5.15063 5.26165 5.29367 5.38423 5.39551 5.45250 5.50339 5.57994 5.64329 5.87108 6.21052 6.39271 6.50273 7.13719 7.40657 8.00352 8.67343 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.003164 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.144098 B = 8847.971972 C = 9671.224202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.449 5.449 5 C -0.344 4.344 6 H 0.063 0.937 7 C 0.006 3.994 8 N -0.889 5.889 9 Si 0.981 3.019 10 H -0.279 1.279 11 H -0.267 1.267 12 H -0.266 1.266 13 C 0.452 3.548 14 O -0.628 6.628 15 C -0.119 4.119 16 C 0.094 3.906 17 O -0.324 6.324 18 C 0.111 3.889 19 C -0.234 4.234 20 C -0.082 4.082 21 C -0.162 4.162 22 C -0.053 4.053 23 C -0.111 4.111 24 C -0.168 4.168 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.274 0.726 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.118 0.882 38 H 0.143 0.857 39 H 0.151 0.849 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -5.677 -17.316 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.172 4.172 3 C -0.015 4.015 4 N -0.167 5.167 5 C -0.472 4.472 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.526 5.526 9 Si 0.804 3.196 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.190 1.190 13 C 0.242 3.758 14 O -0.515 6.515 15 C -0.159 4.159 16 C 0.018 3.982 17 O -0.239 6.239 18 C 0.066 3.934 19 C -0.253 4.253 20 C -0.100 4.100 21 C -0.180 4.180 22 C -0.053 4.053 23 C -0.167 4.167 24 C -0.186 4.186 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.161 0.839 39 H 0.169 0.831 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.093 0.907 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.344 -5.506 -17.161 18.330 hybrid contribution 0.737 0.288 1.488 1.685 sum -2.607 -5.218 -15.673 16.724 Atomic orbital electron populations 1.21634 0.93254 1.02453 1.02214 1.21893 0.97481 0.96448 1.01343 1.21676 0.79945 0.96730 1.03150 1.43691 1.06053 1.62632 1.04364 1.19348 1.12529 1.22574 0.92748 0.91938 1.26168 0.96852 0.92750 1.03973 1.69988 1.33723 1.13547 1.35390 0.85140 0.78117 0.78892 0.77426 1.20476 1.19098 1.19014 1.20853 0.87760 0.81122 0.86084 1.90484 1.16116 1.57094 1.87821 1.21352 0.98678 1.05761 0.90075 1.22189 0.93857 1.01465 0.80689 1.85937 1.36269 1.88104 1.13552 1.19363 0.90555 0.96725 0.86774 1.21474 0.93177 1.09939 1.00718 1.21243 1.00771 0.96286 0.91677 1.21300 0.94224 1.04241 0.98259 1.20117 0.93866 0.95719 0.95562 1.20866 1.00832 1.03417 0.91622 1.20547 1.01040 1.07875 0.89173 0.91581 0.91140 0.93066 0.92167 0.93440 0.90044 0.91711 0.91651 0.87935 0.87124 0.92705 0.92135 0.86392 0.83877 0.83133 0.89848 0.89677 0.90686 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.91 71.98 0.71 -2.93 16 2 C -0.13 -4.61 6.17 30.60 0.19 -4.42 16 3 C 0.11 4.61 4.69 86.38 0.41 5.02 16 4 N -0.45 -23.11 2.50 -635.53 -1.59 -24.70 16 5 C -0.34 -19.57 8.84 84.04 0.74 -18.83 16 6 H 0.06 3.78 7.82 -2.91 -0.02 3.76 16 7 C 0.01 0.29 4.95 84.93 0.42 0.72 16 8 N -0.89 -48.14 11.61 21.66 0.25 -47.89 16 9 Si 0.98 42.43 29.59 68.60 2.03 44.46 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 13 C 0.45 22.57 7.59 87.66 0.67 23.24 16 14 O -0.63 -36.14 15.89 -3.06 -0.05 -36.18 16 15 C -0.12 -4.49 4.67 29.85 0.14 -4.35 16 16 C 0.09 3.40 4.03 71.98 0.29 3.69 16 17 O -0.32 -10.83 10.14 -92.47 -0.94 -11.77 16 18 C 0.11 3.37 6.69 22.51 0.15 3.52 16 19 C -0.23 -6.82 9.04 22.37 0.20 -6.62 16 20 C -0.08 -1.88 10.04 22.25 0.22 -1.66 16 21 C -0.16 -3.15 9.70 22.28 0.22 -2.94 16 22 C -0.05 -1.05 5.88 -19.88 -0.12 -1.17 16 23 C -0.11 -1.37 10.01 71.24 0.71 -0.65 16 24 C -0.17 -4.19 9.64 22.36 0.22 -3.97 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.55 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.96 6.60 -2.39 -0.02 1.94 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.08 3.87 5.76 -2.39 -0.01 3.86 16 31 H 0.06 2.51 6.66 -2.38 -0.02 2.49 16 32 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 33 H 0.10 3.64 7.41 -2.39 -0.02 3.62 16 34 H 0.11 3.66 6.54 -2.39 -0.02 3.65 16 35 H 0.05 2.12 7.61 -2.39 -0.02 2.10 16 36 H 0.06 2.25 7.63 -2.39 -0.02 2.23 16 37 H 0.12 3.67 6.30 -2.91 -0.02 3.65 16 38 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 39 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 42 H 0.07 0.84 8.09 -2.38 -0.02 0.82 16 43 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -68.81 354.59 5.86 -62.95 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.99 Total: 24.49 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: 5.17 Total: -11.36 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -1.34 Total: -72.59 kcal Atomic # 8 Polarization: -46.97 SS G_CDS: -0.99 Total: -47.95 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -68.81 5.86 -62.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044379539.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.705 kcal (2) G-P(sol) polarization free energy of solvation -68.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds