Wall clock time and date at job start Tue Mar 31 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00189 * 2 1 4 4 H 1.09000 * 109.47185 * 30.00029 * 3 2 1 5 5 C 1.50701 * 109.46869 * 269.99601 * 3 2 1 6 6 O 1.21276 * 119.99837 * 339.40627 * 5 3 2 7 7 N 1.34773 * 119.99420 * 159.41218 * 5 3 2 8 8 C 1.46504 * 119.99470 * 183.96619 * 7 5 3 9 9 C 1.50703 * 109.47286 * 89.99901 * 8 7 5 10 10 H 1.08006 * 119.99842 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00027 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00158 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99804 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47199 * 60.00078 * 13 11 9 15 15 H 1.48496 * 109.46965 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46919 * 299.99992 * 13 11 9 17 17 C 1.46495 * 120.00362 * 3.96251 * 7 5 3 18 18 C 1.53000 * 109.47071 * 114.44282 * 17 7 5 19 19 C 1.52998 * 109.47432 * 234.44248 * 17 7 5 20 20 C 1.50706 * 109.46935 * 149.99840 * 3 2 1 21 21 C 1.38234 * 119.99624 * 226.85088 * 20 3 2 22 22 C 1.38232 * 119.99852 * 179.97438 * 21 20 3 23 23 C 1.38234 * 120.00046 * 359.95667 * 22 21 20 24 24 C 1.38231 * 120.00057 * 359.97438 * 23 22 21 25 25 C 1.38236 * 120.00198 * 0.07181 * 24 23 22 26 26 H 1.08995 * 109.47464 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47262 * 300.00494 * 1 2 3 28 28 H 1.09003 * 109.46867 * 60.00144 * 1 2 3 29 29 H 1.09008 * 109.46976 * 209.99490 * 8 7 5 30 30 H 1.08994 * 109.47268 * 329.99445 * 8 7 5 31 31 H 0.97002 * 120.00010 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47215 * 354.44227 * 17 7 5 33 33 H 1.09001 * 109.47145 * 59.99903 * 18 17 7 34 34 H 1.09003 * 109.47677 * 179.97438 * 18 17 7 35 35 H 1.08995 * 109.47409 * 300.00038 * 18 17 7 36 36 H 1.08998 * 109.46997 * 59.99803 * 19 17 7 37 37 H 1.08997 * 109.47363 * 180.02562 * 19 17 7 38 38 H 1.09003 * 109.47422 * 300.00220 * 19 17 7 39 39 H 1.07996 * 120.00412 * 359.97438 * 21 20 3 40 40 H 1.08006 * 120.00200 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00352 * 179.72295 * 23 22 21 42 42 H 1.08005 * 120.00199 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00398 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2147 1.7643 -1.4208 6 8 2.2574 0.9518 -2.3202 7 7 2.3501 3.0775 -1.6919 8 6 2.4617 3.5310 -3.0805 9 6 1.0869 3.8177 -3.6273 10 1 0.2171 3.6766 -3.0028 11 6 0.9396 4.2611 -4.9245 12 7 1.9988 4.4343 -5.6845 13 14 -0.7645 4.6171 -5.6020 14 1 -1.4106 5.6758 -4.7855 15 1 -0.6513 5.0778 -7.0092 16 1 -1.5860 3.3811 -5.5498 17 6 2.3858 4.0514 -0.5981 18 6 3.7651 4.7117 -0.5480 19 6 1.3167 5.1206 -0.8322 20 6 3.3387 1.2638 0.7105 21 6 3.6470 2.2237 1.6562 22 6 4.8653 2.1852 2.3083 23 6 5.7748 1.1864 2.0153 24 6 5.4659 0.2257 1.0706 25 6 4.2481 0.2647 0.4178 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.0645 4.4384 -3.1191 30 1 2.9362 2.7539 -3.6796 31 1 1.8951 4.7459 -6.5972 32 1 2.1913 3.5439 0.3467 33 1 3.9595 5.2192 -1.4928 34 1 3.7915 5.4367 0.2656 35 1 4.5267 3.9501 -0.3812 36 1 0.3341 4.6502 -0.8680 37 1 1.3436 5.8455 -0.0186 38 1 1.5111 5.6282 -1.7771 39 1 2.9362 3.0037 1.8857 40 1 5.1064 2.9354 3.0470 41 1 6.7285 1.1589 2.5215 42 1 6.1768 -0.5545 0.8413 43 1 4.0069 -0.4856 -0.3206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050437649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:43 Heat of formation + Delta-G solvation = -49.794396 kcal Electronic energy + Delta-G solvation = -24595.295034 eV Core-core repulsion = 21219.979826 eV Total energy + Delta-G solvation = -3375.315208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.21188 -38.46893 -37.21463 -35.79156 -32.92409 -32.03877 -30.97060 -30.71633 -28.11709 -27.03971 -26.64313 -25.43621 -22.91597 -22.60010 -21.69484 -20.98783 -18.34227 -17.37591 -16.83952 -16.42099 -16.26378 -15.63971 -15.01546 -14.53552 -14.46449 -14.41442 -13.93798 -13.73934 -13.55046 -13.25706 -13.01031 -12.63085 -12.52937 -12.33852 -12.04236 -11.67429 -11.63266 -11.37839 -11.20635 -11.05898 -10.95694 -10.94810 -10.80590 -10.51621 -10.31019 -10.15612 -9.99568 -9.55634 -9.05647 -8.84659 -8.41874 -8.35398 -7.63510 -6.03001 -4.06903 1.31348 1.46781 3.30465 3.33381 3.35861 3.39745 3.57622 3.77489 4.22621 4.44861 4.77006 4.88787 5.00012 5.06942 5.14248 5.16897 5.29922 5.31293 5.45813 5.51256 5.57853 5.61243 5.65504 5.72571 5.85489 5.94909 6.00822 6.09860 6.15293 6.26027 6.36338 6.46210 6.55724 6.60708 6.62223 6.94655 7.01226 7.04470 7.23555 7.49063 7.57879 7.93630 8.25519 8.43785 8.90749 9.09260 9.57134 11.05076 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.005314 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.636010 B = 5268.191120 C = 5772.073354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.111 3.889 4 H 0.084 0.916 5 C 0.490 3.510 6 O -0.523 6.523 7 N -0.587 5.587 8 C 0.247 3.753 9 C -0.520 4.520 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.894 3.106 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.128 3.872 18 C -0.161 4.161 19 C -0.156 4.156 20 C -0.078 4.078 21 C -0.105 4.105 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.082 4.082 26 H 0.088 0.912 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -2.324 17.649 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.050 3.950 4 H 0.101 0.899 5 C 0.275 3.725 6 O -0.399 6.399 7 N -0.320 5.320 8 C 0.128 3.872 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.533 5.533 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.023 3.977 18 C -0.219 4.219 19 C -0.214 4.214 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.141 4.141 23 C -0.136 4.136 24 C -0.142 4.142 25 C -0.100 4.100 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.423 -2.866 16.950 17.529 hybrid contribution -1.209 0.556 -0.525 1.431 sum 2.214 -2.310 16.425 16.734 Atomic orbital electron populations 1.22853 0.80684 1.02979 1.00212 1.87950 1.19887 1.24908 1.94660 1.20927 0.93290 0.86593 0.94221 0.89853 1.20649 0.78534 0.83202 0.90101 1.90671 1.49618 1.52626 1.47025 1.48340 1.70070 1.04485 1.09154 1.19230 0.97296 0.95592 0.75081 1.21378 0.92689 1.44411 0.97456 0.92561 1.24916 0.96804 0.95667 0.96667 1.69921 1.28673 1.46396 1.08340 0.86620 0.84563 0.78602 0.77998 1.20277 1.21211 1.20275 1.21153 0.95778 0.90806 0.89926 1.22153 0.96721 1.00543 1.02450 1.22135 0.98436 0.98088 1.02768 1.19406 0.94552 0.96812 0.97140 1.21006 0.97540 0.98111 0.95687 1.21020 0.93949 0.98865 1.00267 1.21154 0.99284 0.95096 0.98037 1.21159 0.96796 0.99258 0.96947 1.21096 0.92774 0.97639 0.98463 0.89314 0.94172 0.93310 0.94826 0.94035 0.92716 0.90897 0.91519 0.92292 0.92696 0.92634 0.93229 0.90010 0.85806 0.85934 0.86214 0.86002 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.81 101.05 1.09 1.51 16 2 O -0.36 -6.21 9.54 -54.24 -0.52 -6.73 16 3 C 0.11 1.89 1.99 -29.03 -0.06 1.83 16 4 H 0.08 1.23 6.16 -51.93 -0.32 0.91 16 5 C 0.49 10.67 6.78 -10.99 -0.07 10.60 16 6 O -0.52 -13.80 16.18 -13.45 -0.22 -14.01 16 7 N -0.59 -12.53 2.38 -167.47 -0.40 -12.93 16 8 C 0.25 6.42 4.48 -5.19 -0.02 6.40 16 9 C -0.52 -14.39 7.85 -34.44 -0.27 -14.66 16 10 H 0.06 1.54 7.52 -52.48 -0.39 1.15 16 11 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 13 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.13 2.10 2.67 -67.93 -0.18 1.92 16 18 C -0.16 -2.40 8.95 37.16 0.33 -2.06 16 19 C -0.16 -2.57 8.35 37.16 0.31 -2.26 16 20 C -0.08 -1.19 4.72 -104.62 -0.49 -1.68 16 21 C -0.11 -1.30 7.96 -39.59 -0.32 -1.62 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.12 -1.29 10.05 -39.59 -0.40 -1.68 16 24 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.08 -1.25 9.30 -39.58 -0.37 -1.61 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.89 6.71 -51.92 -0.35 0.54 16 30 H 0.04 1.25 7.37 -51.93 -0.38 0.86 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 32 H 0.07 1.02 2.95 -51.93 -0.15 0.87 16 33 H 0.07 1.12 6.89 -51.93 -0.36 0.76 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.83 7.78 -51.93 -0.40 0.43 16 36 H 0.05 0.95 7.96 -51.93 -0.41 0.53 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.08 1.58 6.94 -51.93 -0.36 1.22 16 39 H 0.12 1.29 6.50 -52.49 -0.34 0.95 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 43 H 0.13 2.15 7.97 -52.49 -0.42 1.73 16 LS Contribution 349.59 15.07 5.27 5.27 Total: -1.00 -33.31 349.59 -7.90 -41.21 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -6.41 Total: 1.59 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.34 Total: -5.35 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.34 Total: -38.63 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.74 Total: -20.74 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.31 -7.90 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050437649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.585 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds