Wall clock time and date at job start Tue Mar 31 2020 06:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00189 * 2 1 4 4 H 1.09000 * 109.47185 * 30.00029 * 3 2 1 5 5 C 1.50701 * 109.46869 * 269.99601 * 3 2 1 6 6 O 1.21276 * 119.99837 * 339.40627 * 5 3 2 7 7 N 1.34773 * 119.99420 * 159.41218 * 5 3 2 8 8 C 1.46504 * 119.99470 * 183.96619 * 7 5 3 9 9 C 1.50703 * 109.47286 * 89.99901 * 8 7 5 10 10 H 1.08006 * 119.99842 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00027 * 179.97438 * 9 8 7 12 12 N 1.31509 * 120.00158 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99804 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47199 * 60.00078 * 13 11 9 15 15 H 1.48496 * 109.46965 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46919 * 299.99992 * 13 11 9 17 17 C 1.46495 * 120.00362 * 3.96251 * 7 5 3 18 18 C 1.53000 * 109.47071 * 114.44282 * 17 7 5 19 19 C 1.52998 * 109.47432 * 234.44248 * 17 7 5 20 20 C 1.50706 * 109.46935 * 149.99840 * 3 2 1 21 21 C 1.38234 * 119.99624 * 226.85088 * 20 3 2 22 22 C 1.38232 * 119.99852 * 179.97438 * 21 20 3 23 23 C 1.38234 * 120.00046 * 359.95667 * 22 21 20 24 24 C 1.38231 * 120.00057 * 359.97438 * 23 22 21 25 25 C 1.38236 * 120.00198 * 0.07181 * 24 23 22 26 26 H 1.08995 * 109.47464 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47262 * 300.00494 * 1 2 3 28 28 H 1.09003 * 109.46867 * 60.00144 * 1 2 3 29 29 H 1.09008 * 109.46976 * 209.99490 * 8 7 5 30 30 H 1.08994 * 109.47268 * 329.99445 * 8 7 5 31 31 H 0.97002 * 120.00010 * 179.97438 * 12 11 9 32 32 H 1.09001 * 109.47215 * 354.44227 * 17 7 5 33 33 H 1.09001 * 109.47145 * 59.99903 * 18 17 7 34 34 H 1.09003 * 109.47677 * 179.97438 * 18 17 7 35 35 H 1.08995 * 109.47409 * 300.00038 * 18 17 7 36 36 H 1.08998 * 109.46997 * 59.99803 * 19 17 7 37 37 H 1.08997 * 109.47363 * 180.02562 * 19 17 7 38 38 H 1.09003 * 109.47422 * 300.00220 * 19 17 7 39 39 H 1.07996 * 120.00412 * 359.97438 * 21 20 3 40 40 H 1.08006 * 120.00200 * 179.97438 * 22 21 20 41 41 H 1.08001 * 120.00352 * 179.72295 * 23 22 21 42 42 H 1.08005 * 120.00199 * 179.97438 * 24 23 22 43 43 H 1.07996 * 120.00398 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9994 0.5138 5 6 2.2147 1.7643 -1.4208 6 8 2.2574 0.9518 -2.3202 7 7 2.3501 3.0775 -1.6919 8 6 2.4617 3.5310 -3.0805 9 6 1.0869 3.8177 -3.6273 10 1 0.2171 3.6766 -3.0028 11 6 0.9396 4.2611 -4.9245 12 7 1.9988 4.4343 -5.6845 13 14 -0.7645 4.6171 -5.6020 14 1 -1.4106 5.6758 -4.7855 15 1 -0.6513 5.0778 -7.0092 16 1 -1.5860 3.3811 -5.5498 17 6 2.3858 4.0514 -0.5981 18 6 3.7651 4.7117 -0.5480 19 6 1.3167 5.1206 -0.8322 20 6 3.3387 1.2638 0.7105 21 6 3.6470 2.2237 1.6562 22 6 4.8653 2.1852 2.3083 23 6 5.7748 1.1864 2.0153 24 6 5.4659 0.2257 1.0706 25 6 4.2481 0.2647 0.4178 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.0645 4.4384 -3.1191 30 1 2.9362 2.7539 -3.6796 31 1 1.8951 4.7459 -6.5972 32 1 2.1913 3.5439 0.3467 33 1 3.9595 5.2192 -1.4928 34 1 3.7915 5.4367 0.2656 35 1 4.5267 3.9501 -0.3812 36 1 0.3341 4.6502 -0.8680 37 1 1.3436 5.8455 -0.0186 38 1 1.5111 5.6282 -1.7771 39 1 2.9362 3.0037 1.8857 40 1 5.1064 2.9354 3.0470 41 1 6.7285 1.1589 2.5215 42 1 6.1768 -0.5545 0.8413 43 1 4.0069 -0.4856 -0.3206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050437649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:43 Heat of formation + Delta-G solvation = -70.124230 kcal Electronic energy + Delta-G solvation = -24596.176601 eV Core-core repulsion = 21219.979826 eV Total energy + Delta-G solvation = -3376.196775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.61076 -39.69839 -38.56182 -37.44828 -34.99040 -33.20588 -32.50488 -31.77045 -29.83725 -28.39479 -27.91876 -26.88641 -24.78275 -23.61390 -22.99026 -22.27389 -19.90127 -18.71223 -18.64214 -17.96903 -17.67394 -16.85852 -16.64773 -16.24125 -15.73281 -15.48694 -15.39936 -15.20233 -14.90664 -14.34905 -14.30286 -14.20944 -13.89424 -13.62521 -13.39792 -13.29580 -13.21359 -12.86291 -12.73624 -12.60543 -12.43573 -12.27098 -12.14658 -12.05425 -11.95471 -11.60463 -11.57959 -11.44494 -10.62813 -10.37956 -9.79347 -9.64989 -9.44292 -8.20850 -6.33698 0.33073 0.51969 1.34843 1.39069 1.45936 1.71008 2.11269 2.39053 2.66536 3.00072 3.09183 3.56461 3.65020 3.75305 3.98447 4.12800 4.18553 4.27620 4.28214 4.38578 4.41832 4.47359 4.63943 4.72631 4.74736 4.81269 4.86002 4.97618 5.02032 5.04411 5.08853 5.16301 5.20266 5.42377 5.54668 5.55277 5.58131 5.62325 5.63426 5.83385 5.98483 6.08370 6.10858 6.70725 6.77256 7.27419 7.43426 8.86716 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018996 B = 0.005314 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.636010 B = 5268.191120 C = 5772.073354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.378 6.378 3 C 0.125 3.875 4 H 0.112 0.888 5 C 0.480 3.520 6 O -0.587 6.587 7 N -0.589 5.589 8 C 0.266 3.734 9 C -0.527 4.527 10 H 0.055 0.945 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.963 3.037 14 H -0.257 1.257 15 H -0.281 1.281 16 H -0.280 1.280 17 C 0.120 3.880 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.102 4.102 21 C -0.104 4.104 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.131 4.131 25 C -0.112 4.112 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.021 0.979 29 H 0.025 0.975 30 H -0.014 1.014 31 H 0.265 0.735 32 H 0.108 0.892 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.051 0.949 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.135 0.865 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.867 -0.539 21.492 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.295 6.295 3 C 0.064 3.936 4 H 0.130 0.870 5 C 0.267 3.733 6 O -0.468 6.468 7 N -0.321 5.321 8 C 0.145 3.855 9 C -0.566 4.566 10 H 0.073 0.927 11 C -0.192 4.192 12 N -0.571 5.571 13 Si 0.787 3.213 14 H -0.182 1.182 15 H -0.206 1.206 16 H -0.205 1.205 17 C 0.018 3.982 18 C -0.212 4.212 19 C -0.210 4.210 20 C -0.103 4.103 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.129 4.129 24 C -0.149 4.149 25 C -0.131 4.131 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.040 0.960 29 H 0.043 0.957 30 H 0.004 0.996 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.168 0.832 40 H 0.179 0.821 41 H 0.171 0.829 42 H 0.153 0.847 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.049 -1.053 20.847 21.096 hybrid contribution -1.006 -0.033 -1.667 1.947 sum 2.043 -1.086 19.180 19.319 Atomic orbital electron populations 1.23070 0.79246 1.04509 1.00491 1.87949 1.21639 1.25526 1.94419 1.20873 0.95245 0.86863 0.90658 0.87036 1.21738 0.76890 0.82606 0.92035 1.90623 1.52360 1.54273 1.49529 1.48385 1.69488 1.05682 1.08549 1.18634 0.96175 0.93123 0.77576 1.21591 0.93086 1.44044 0.97859 0.92655 1.25825 1.00931 0.95418 0.96997 1.70056 1.31026 1.47270 1.08699 0.85545 0.79458 0.78650 0.77646 1.18173 1.20593 1.20529 1.21587 0.97060 0.90193 0.89358 1.22113 0.95330 1.01030 1.02693 1.22091 0.97626 0.98561 1.02691 1.19410 0.93604 0.98391 0.98862 1.21289 0.98813 0.97508 0.94604 1.21495 0.92745 0.99061 0.99895 1.21588 1.00619 0.93962 0.96771 1.21376 0.95892 1.00438 0.97176 1.21030 0.94741 0.98022 0.99279 0.87420 0.90688 0.95985 0.95699 0.99551 0.92573 0.87464 0.94340 0.87779 0.93013 0.93641 0.88570 0.93648 0.83208 0.82060 0.82913 0.84668 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.81 113.37 1.23 1.86 16 2 O -0.38 -13.41 9.54 -130.80 -1.25 -14.66 16 3 C 0.12 4.22 1.99 29.10 0.06 4.28 16 4 H 0.11 3.03 6.16 -2.39 -0.01 3.01 16 5 C 0.48 21.86 6.78 87.66 0.59 22.46 16 6 O -0.59 -33.50 16.18 15.16 0.25 -33.26 16 7 N -0.59 -25.96 2.38 -802.15 -1.91 -27.87 16 8 C 0.27 14.73 4.48 85.63 0.38 15.11 16 9 C -0.53 -30.34 7.85 25.60 0.20 -30.14 16 10 H 0.06 3.12 7.52 -2.91 -0.02 3.10 16 11 C 0.01 0.40 5.46 84.65 0.46 0.86 16 12 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 13 Si 0.96 45.20 29.54 68.60 2.03 47.22 16 14 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 17 C 0.12 3.76 2.67 44.99 0.12 3.88 16 18 C -0.15 -4.26 8.95 71.98 0.64 -3.61 16 19 C -0.15 -4.69 8.35 71.98 0.60 -4.09 16 20 C -0.10 -2.99 4.72 -19.86 -0.09 -3.09 16 21 C -0.10 -2.17 7.96 22.27 0.18 -1.99 16 22 C -0.11 -1.90 10.05 22.27 0.22 -1.68 16 23 C -0.11 -2.01 10.05 22.27 0.22 -1.79 16 24 C -0.13 -3.12 10.05 22.27 0.22 -2.90 16 25 C -0.11 -3.52 9.30 22.27 0.21 -3.31 16 26 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.07 1.55 8.09 -2.38 -0.02 1.53 16 28 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.03 1.40 6.71 -2.38 -0.02 1.39 16 30 H -0.01 -0.89 7.37 -2.39 -0.02 -0.91 16 31 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.11 2.62 2.95 -2.39 -0.01 2.61 16 33 H 0.04 1.28 6.89 -2.39 -0.02 1.26 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.46 7.78 -2.39 -0.02 1.45 16 36 H 0.04 1.48 7.96 -2.39 -0.02 1.46 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.04 1.74 6.94 -2.39 -0.02 1.72 16 39 H 0.15 2.25 6.50 -2.91 -0.02 2.23 16 40 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 42 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.10 3.52 7.97 -2.91 -0.02 3.50 16 Total: -1.00 -80.35 349.59 5.64 -74.71 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.99 Total: 14.91 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.25 Total: -4.16 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -1.63 Total: -84.77 kcal Atomic # 8 Polarization: -46.92 SS G_CDS: -1.00 Total: -47.92 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -80.35 5.64 -74.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050437649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.586 kcal (2) G-P(sol) polarization free energy of solvation -80.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds