Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 N 1.46897 * 109.47076 * 179.37533 * 3 2 1 5 5 C 1.46902 * 111.00228 * 297.30406 * 4 3 2 6 6 C 1.50702 * 109.46894 * 292.74403 * 5 4 3 7 7 H 1.08002 * 119.99659 * 355.02361 * 6 5 4 8 8 C 1.37872 * 120.00031 * 175.03125 * 6 5 4 9 9 N 1.31517 * 120.00080 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47384 * 89.99936 * 10 8 6 12 12 H 1.48510 * 109.46940 * 209.99803 * 10 8 6 13 13 H 1.48496 * 109.47094 * 329.99275 * 10 8 6 14 14 C 1.46903 * 110.99544 * 61.25445 * 4 3 2 15 15 C 1.53000 * 109.47239 * 66.04584 * 14 4 3 16 16 H 1.09001 * 109.70169 * 305.57475 * 15 14 4 17 17 C 1.53468 * 109.70698 * 184.99600 * 15 14 4 18 18 O 1.43177 * 108.23282 * 180.58394 * 17 15 14 19 19 C 1.36109 * 116.68781 * 46.29277 * 18 17 15 20 20 C 1.38711 * 119.38784 * 162.89245 * 19 18 17 21 21 C 1.38192 * 120.06047 * 180.13070 * 20 19 18 22 22 C 1.38250 * 120.11346 * 359.45383 * 21 20 19 23 23 C 1.38202 * 120.11619 * 0.33474 * 22 21 20 24 24 C 1.38700 * 120.06263 * 0.02562 * 23 22 21 25 25 O 1.36103 * 119.39891 * 179.60245 * 24 23 22 26 26 H 1.09000 * 109.47182 * 299.99235 * 1 2 3 27 27 H 1.08994 * 109.47629 * 60.00019 * 1 2 3 28 28 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47222 * 239.99985 * 2 1 3 30 30 H 1.09004 * 109.46918 * 120.00081 * 2 1 3 31 31 H 1.09003 * 109.46981 * 59.37972 * 3 2 1 32 32 H 1.09001 * 109.47230 * 299.37878 * 3 2 1 33 33 H 1.08995 * 109.47224 * 52.73889 * 5 4 3 34 34 H 1.09004 * 109.47163 * 172.74736 * 5 4 3 35 35 H 0.96999 * 119.99788 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47462 * 306.04310 * 14 4 3 37 37 H 1.09003 * 109.46813 * 186.04433 * 14 4 3 38 38 H 1.09003 * 109.71005 * 60.90186 * 17 15 14 39 39 H 1.09003 * 109.71495 * 300.27245 * 17 15 14 40 40 H 1.07996 * 119.96702 * 359.85426 * 20 19 18 41 41 H 1.08002 * 119.94442 * 179.72743 * 21 20 19 42 42 H 1.08006 * 119.94292 * 180.31925 * 22 21 20 43 43 H 1.08003 * 119.96548 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0151 5 6 4.0228 0.8179 1.2414 6 6 3.6778 1.6812 2.4274 7 1 3.2029 2.6396 2.2778 8 6 3.9684 1.2476 3.7035 9 7 4.5464 0.0804 3.8857 10 14 3.5414 2.3180 5.1736 11 1 2.1707 1.9914 5.6423 12 1 4.5123 2.0653 6.2686 13 1 3.6019 3.7482 4.7788 14 6 4.0475 0.7787 -1.1795 15 6 3.6962 1.6000 -2.4216 16 1 2.6199 1.7680 -2.4588 17 6 4.1468 0.8500 -3.6825 18 8 3.8160 1.6509 -4.8223 19 6 4.1364 2.9720 -4.7550 20 6 4.1798 3.7221 -5.9209 21 6 4.5062 5.0640 -5.8690 22 6 4.7793 5.6649 -4.6542 23 6 4.7336 4.9242 -3.4884 24 6 4.4140 3.5753 -3.5343 25 8 4.3809 2.8568 -2.3788 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6675 1.9595 0.8844 32 1 1.6858 1.9531 -0.8955 33 1 3.5710 -0.1662 1.3647 34 1 5.1056 0.7144 1.1701 35 1 4.7506 -0.2248 4.7835 36 1 3.6141 -0.2176 -1.2681 37 1 5.1310 0.6971 -1.0923 38 1 3.6310 -0.1082 -3.7443 39 1 5.2240 0.6868 -3.6480 40 1 3.9626 3.2561 -6.8706 41 1 4.5436 5.6453 -6.7785 42 1 5.0290 6.7150 -4.6163 43 1 4.9478 5.3960 -2.5408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052922978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -45.557976 kcal Electronic energy + Delta-G solvation = -23698.381045 eV Core-core repulsion = 20323.249542 eV Total energy + Delta-G solvation = -3375.131503 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17569 -38.16940 -37.35613 -36.79678 -32.85035 -32.60957 -31.11028 -30.59799 -28.78873 -27.15023 -26.08220 -24.57352 -23.01306 -22.49840 -22.17433 -20.56295 -19.37200 -18.51125 -17.45193 -16.73307 -16.19190 -15.54316 -15.15760 -15.04342 -14.73957 -14.47676 -14.33062 -14.15379 -13.80528 -13.74111 -13.38528 -13.25858 -12.81921 -12.29076 -11.95487 -11.82259 -11.63425 -11.40071 -11.27569 -11.12879 -11.06029 -10.90811 -10.77235 -10.70689 -10.39717 -10.27605 -9.98738 -9.69352 -9.21122 -8.61793 -8.43952 -7.98194 -7.20681 -6.03450 -4.04005 1.30444 1.35331 3.09848 3.31378 3.33072 3.37946 3.42840 3.75567 4.19501 4.43690 4.63660 4.86022 4.89418 4.99742 5.12168 5.18572 5.28155 5.32456 5.39868 5.43681 5.45197 5.51280 5.53658 5.75918 5.79176 5.90670 6.01628 6.10803 6.16218 6.24441 6.25552 6.33627 6.44210 6.45966 6.65316 6.66431 6.87166 7.03125 7.25947 7.36560 7.57837 7.79611 8.06117 8.14829 8.51807 9.03881 9.60145 11.07259 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.004061 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.775347 B = 6892.475655 C = 7652.480955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.165 4.165 3 C 0.063 3.937 4 N -0.526 5.526 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.058 3.942 15 C 0.059 3.941 16 H 0.084 0.916 17 C 0.025 3.975 18 O -0.310 6.310 19 C 0.041 3.959 20 C -0.117 4.117 21 C -0.127 4.127 22 C -0.117 4.117 23 C -0.117 4.117 24 C 0.062 3.938 25 O -0.278 6.278 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.004 0.996 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.077 0.923 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 3.855 -17.761 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.204 4.204 3 C -0.066 4.066 4 N -0.248 5.248 5 C 0.065 3.935 6 C -0.541 4.541 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.071 4.071 15 C 0.002 3.998 16 H 0.102 0.898 17 C -0.051 4.051 18 O -0.225 6.225 19 C -0.004 4.004 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.135 4.135 24 C 0.016 3.984 25 O -0.192 6.192 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.189 4.169 -17.562 18.183 hybrid contribution -0.466 -0.588 0.987 1.240 sum -2.656 3.581 -16.575 17.164 Atomic orbital electron populations 1.21649 0.96316 1.00783 1.01332 1.22199 0.95791 1.00361 1.02070 1.22123 0.88534 0.94411 1.01506 1.62310 1.06212 1.54241 1.02068 1.19806 0.95154 0.93557 0.85005 1.21125 1.39052 1.04005 0.89963 0.91885 1.24962 0.95410 0.95178 0.98991 1.69952 1.42641 1.19382 1.22004 0.86528 0.78005 0.80937 0.82159 1.20787 1.21299 1.19752 1.22038 1.01468 0.93971 0.89600 1.23315 0.97000 0.83449 0.96013 0.89804 1.23688 1.02127 0.94512 0.84803 1.86268 1.78716 1.16760 1.40717 1.18979 1.03788 0.84187 0.93432 1.20382 1.03149 0.94012 0.96015 1.20832 1.01681 0.93927 0.98116 1.20898 1.01121 0.99853 0.91677 1.20536 1.02811 0.90367 0.99817 1.19145 1.01872 0.92446 0.84971 1.86564 1.71979 1.31742 1.28920 0.92585 0.93533 0.93524 0.93248 0.90384 0.89725 0.93194 0.97846 0.95664 0.92977 0.92870 0.90123 0.86240 0.90434 0.85263 0.85483 0.85365 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.17 -2.79 5.28 -26.73 -0.14 -2.94 16 3 C 0.06 1.18 4.96 -3.82 -0.02 1.16 16 4 N -0.53 -10.97 4.66 -236.06 -1.10 -12.07 16 5 C 0.19 4.76 4.54 -4.97 -0.02 4.74 16 6 C -0.50 -13.88 8.39 -34.44 -0.29 -14.17 16 7 H 0.06 1.75 7.39 -52.49 -0.39 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.32 13.29 55.43 0.74 -25.59 16 10 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.06 0.99 4.42 -3.82 -0.02 0.97 16 15 C 0.06 0.91 2.98 -26.49 -0.08 0.83 16 16 H 0.08 1.30 6.31 -51.93 -0.33 0.98 16 17 C 0.02 0.31 6.56 37.40 0.25 0.56 16 18 O -0.31 -4.39 10.42 -32.88 -0.34 -4.74 16 19 C 0.04 0.59 6.49 -39.14 -0.25 0.34 16 20 C -0.12 -1.40 9.96 -39.42 -0.39 -1.79 16 21 C -0.13 -1.33 10.04 -39.59 -0.40 -1.72 16 22 C -0.12 -1.29 10.04 -39.59 -0.40 -1.69 16 23 C -0.12 -1.59 9.96 -39.42 -0.39 -1.99 16 24 C 0.06 0.96 6.49 -39.14 -0.25 0.71 16 25 O -0.28 -4.88 10.04 -32.86 -0.33 -5.21 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.76 6.33 -51.93 -0.33 0.43 16 30 H 0.08 1.56 6.28 -51.93 -0.33 1.23 16 31 H 0.08 1.76 6.98 -51.93 -0.36 1.40 16 32 H 0.05 0.85 6.31 -51.93 -0.33 0.53 16 33 H 0.00 0.10 6.02 -51.93 -0.31 -0.21 16 34 H 0.03 0.69 7.91 -51.93 -0.41 0.27 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.05 0.82 6.05 -51.93 -0.31 0.51 16 37 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 38 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 41 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 42 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.14 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 343.51 15.07 5.18 5.18 Total: -1.00 -30.64 343.51 -9.47 -40.11 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -6.45 Total: 1.00 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.14 Total: -15.22 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: -0.36 Total: -37.66 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.67 Total: -9.95 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.64 -9.47 -40.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052922978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.450 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds