Wall clock time and date at job start Tue Mar 31 2020 06:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46959 * 2 1 4 4 N 1.46897 * 109.47076 * 179.37533 * 3 2 1 5 5 C 1.46902 * 111.00228 * 297.30406 * 4 3 2 6 6 C 1.50702 * 109.46894 * 292.74403 * 5 4 3 7 7 H 1.08002 * 119.99659 * 355.02361 * 6 5 4 8 8 C 1.37872 * 120.00031 * 175.03125 * 6 5 4 9 9 N 1.31517 * 120.00080 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47384 * 89.99936 * 10 8 6 12 12 H 1.48510 * 109.46940 * 209.99803 * 10 8 6 13 13 H 1.48496 * 109.47094 * 329.99275 * 10 8 6 14 14 C 1.46903 * 110.99544 * 61.25445 * 4 3 2 15 15 C 1.53000 * 109.47239 * 66.04584 * 14 4 3 16 16 H 1.09001 * 109.70169 * 305.57475 * 15 14 4 17 17 C 1.53468 * 109.70698 * 184.99600 * 15 14 4 18 18 O 1.43177 * 108.23282 * 180.58394 * 17 15 14 19 19 C 1.36109 * 116.68781 * 46.29277 * 18 17 15 20 20 C 1.38711 * 119.38784 * 162.89245 * 19 18 17 21 21 C 1.38192 * 120.06047 * 180.13070 * 20 19 18 22 22 C 1.38250 * 120.11346 * 359.45383 * 21 20 19 23 23 C 1.38202 * 120.11619 * 0.33474 * 22 21 20 24 24 C 1.38700 * 120.06263 * 0.02562 * 23 22 21 25 25 O 1.36103 * 119.39891 * 179.60245 * 24 23 22 26 26 H 1.09000 * 109.47182 * 299.99235 * 1 2 3 27 27 H 1.08994 * 109.47629 * 60.00019 * 1 2 3 28 28 H 1.09002 * 109.47048 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47222 * 239.99985 * 2 1 3 30 30 H 1.09004 * 109.46918 * 120.00081 * 2 1 3 31 31 H 1.09003 * 109.46981 * 59.37972 * 3 2 1 32 32 H 1.09001 * 109.47230 * 299.37878 * 3 2 1 33 33 H 1.08995 * 109.47224 * 52.73889 * 5 4 3 34 34 H 1.09004 * 109.47163 * 172.74736 * 5 4 3 35 35 H 0.96999 * 119.99788 * 180.02562 * 9 8 6 36 36 H 1.09005 * 109.47462 * 306.04310 * 14 4 3 37 37 H 1.09003 * 109.46813 * 186.04433 * 14 4 3 38 38 H 1.09003 * 109.71005 * 60.90186 * 17 15 14 39 39 H 1.09003 * 109.71495 * 300.27245 * 17 15 14 40 40 H 1.07996 * 119.96702 * 359.85426 * 20 19 18 41 41 H 1.08002 * 119.94442 * 179.72743 * 21 20 19 42 42 H 1.08006 * 119.94292 * 180.31925 * 22 21 20 43 43 H 1.08003 * 119.96548 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 0.0151 5 6 4.0228 0.8179 1.2414 6 6 3.6778 1.6812 2.4274 7 1 3.2029 2.6396 2.2778 8 6 3.9684 1.2476 3.7035 9 7 4.5464 0.0804 3.8857 10 14 3.5414 2.3180 5.1736 11 1 2.1707 1.9914 5.6423 12 1 4.5123 2.0653 6.2686 13 1 3.6019 3.7482 4.7788 14 6 4.0475 0.7787 -1.1795 15 6 3.6962 1.6000 -2.4216 16 1 2.6199 1.7680 -2.4588 17 6 4.1468 0.8500 -3.6825 18 8 3.8160 1.6509 -4.8223 19 6 4.1364 2.9720 -4.7550 20 6 4.1798 3.7221 -5.9209 21 6 4.5062 5.0640 -5.8690 22 6 4.7793 5.6649 -4.6542 23 6 4.7336 4.9242 -3.4884 24 6 4.4140 3.5753 -3.5343 25 8 4.3809 2.8568 -2.3788 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6675 1.9595 0.8844 32 1 1.6858 1.9531 -0.8955 33 1 3.5710 -0.1662 1.3647 34 1 5.1056 0.7144 1.1701 35 1 4.7506 -0.2248 4.7835 36 1 3.6141 -0.2176 -1.2681 37 1 5.1310 0.6971 -1.0923 38 1 3.6310 -0.1082 -3.7443 39 1 5.2240 0.6868 -3.6480 40 1 3.9626 3.2561 -6.8706 41 1 4.5436 5.6453 -6.7785 42 1 5.0290 6.7150 -4.6163 43 1 4.9478 5.3960 -2.5408 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052922978.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:51 Heat of formation + Delta-G solvation = -64.441033 kcal Electronic energy + Delta-G solvation = -23699.199876 eV Core-core repulsion = 20323.249542 eV Total energy + Delta-G solvation = -3375.950334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.24610 -39.52308 -38.42675 -38.04235 -34.89708 -33.90583 -32.51451 -31.56443 -29.96091 -28.89474 -27.39997 -26.08105 -24.32861 -23.72959 -23.56747 -21.74506 -20.83300 -19.64419 -18.52689 -18.37906 -17.70432 -16.99778 -16.58689 -16.21241 -16.11272 -15.92353 -15.52905 -15.29772 -15.05034 -14.90820 -14.79544 -14.55514 -14.23094 -13.84254 -13.33369 -12.96098 -12.93059 -12.79831 -12.70595 -12.64930 -12.52755 -12.37381 -12.27069 -12.12842 -11.98008 -11.72825 -11.43574 -11.31814 -11.10763 -10.59603 -9.59030 -9.01511 -8.88837 -8.19542 -6.28205 0.34793 0.38605 1.39145 1.40358 1.51879 2.06969 2.27315 2.39702 2.79753 3.01269 3.13122 3.45864 3.71665 3.77216 3.80808 4.06894 4.11567 4.17162 4.23457 4.31791 4.40181 4.41518 4.49331 4.50654 4.63049 4.65127 4.74619 4.84604 4.95853 5.02534 5.08585 5.15432 5.26102 5.27983 5.30515 5.40694 5.48857 5.55358 5.66856 5.77509 5.99232 6.08403 6.33437 6.49875 6.63945 6.87386 7.40802 8.90737 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018480 B = 0.004061 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.775347 B = 6892.475655 C = 7652.480955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.157 4.157 3 C 0.067 3.933 4 N -0.541 5.541 5 C 0.207 3.793 6 C -0.518 4.518 7 H 0.055 0.945 8 C 0.006 3.994 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.061 3.939 15 C 0.065 3.935 16 H 0.082 0.918 17 C 0.030 3.970 18 O -0.315 6.315 19 C 0.022 3.978 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.111 4.111 23 C -0.136 4.136 24 C 0.029 3.971 25 O -0.312 6.312 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.071 0.929 33 H -0.013 1.013 34 H -0.005 1.005 35 H 0.264 0.736 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 4.881 -19.950 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.196 4.196 3 C -0.061 4.061 4 N -0.264 5.264 5 C 0.081 3.919 6 C -0.556 4.556 7 H 0.073 0.927 8 C -0.192 4.192 9 N -0.573 5.573 10 Si 0.787 3.213 11 H -0.197 1.197 12 H -0.207 1.207 13 H -0.194 1.194 14 C -0.067 4.067 15 C 0.008 3.992 16 H 0.099 0.901 17 C -0.046 4.046 18 O -0.230 6.230 19 C -0.023 4.023 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.155 4.155 24 C -0.016 4.016 25 O -0.227 6.227 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.005 0.995 34 H 0.013 0.987 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.168 0.832 39 H 0.097 0.903 40 H 0.168 0.832 41 H 0.184 0.816 42 H 0.177 0.823 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.174 5.203 -19.776 20.694 hybrid contribution -0.128 -0.828 1.558 1.768 sum -3.302 4.375 -18.219 19.026 Atomic orbital electron populations 1.21612 0.93952 1.02047 1.01932 1.22080 0.97836 0.98525 1.01158 1.22072 0.87177 0.95720 1.01129 1.62144 1.07715 1.54722 1.01812 1.19409 0.93164 0.92698 0.86638 1.21398 1.38971 1.03986 0.91294 0.92671 1.25796 0.95162 0.96426 1.01853 1.70065 1.43549 1.20928 1.22772 0.85488 0.78132 0.79129 0.78530 1.19731 1.20706 1.19374 1.22043 1.00686 0.95115 0.88853 1.23201 0.96695 0.83207 0.96088 0.90061 1.23765 1.02680 0.94997 0.83140 1.86250 1.78980 1.16863 1.40890 1.19280 1.04692 0.84514 0.93829 1.20787 1.02367 0.94658 0.96008 1.21316 0.99247 0.93500 0.99255 1.21290 0.99614 1.01095 0.90901 1.20758 1.03630 0.90203 1.00867 1.19459 1.04113 0.93178 0.84888 1.86490 1.72773 1.32758 1.30666 0.93497 0.91422 0.91939 0.91253 0.94072 0.92451 0.91101 0.99497 0.98655 0.92760 0.90943 0.91334 0.83186 0.90263 0.83167 0.81633 0.82324 0.85346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.03 16 2 C -0.16 -5.30 5.28 30.59 0.16 -5.13 16 3 C 0.07 2.56 4.96 86.30 0.43 2.99 16 4 N -0.54 -23.45 4.66 -900.77 -4.20 -27.65 16 5 C 0.21 10.94 4.54 85.56 0.39 11.32 16 6 C -0.52 -29.71 8.39 25.60 0.21 -29.50 16 7 H 0.06 3.18 7.39 -2.91 -0.02 3.16 16 8 C 0.01 0.32 5.46 84.65 0.46 0.78 16 9 N -0.93 -56.02 13.29 21.45 0.28 -55.74 16 10 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 14 C 0.06 2.13 4.42 86.30 0.38 2.51 16 15 C 0.06 1.99 2.98 30.75 0.09 2.08 16 16 H 0.08 2.48 6.31 -2.39 -0.02 2.47 16 17 C 0.03 0.72 6.56 72.14 0.47 1.20 16 18 O -0.32 -8.49 10.42 -82.56 -0.86 -9.35 16 19 C 0.02 0.60 6.49 22.56 0.15 0.75 16 20 C -0.12 -2.56 9.96 22.37 0.22 -2.33 16 21 C -0.12 -1.99 10.04 22.26 0.22 -1.77 16 22 C -0.11 -2.17 10.04 22.26 0.22 -1.95 16 23 C -0.14 -3.69 9.96 22.37 0.22 -3.46 16 24 C 0.03 0.90 6.49 22.55 0.15 1.05 16 25 O -0.31 -11.28 10.04 -82.49 -0.83 -12.11 16 26 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.07 2.04 6.33 -2.39 -0.02 2.02 16 30 H 0.04 1.69 6.28 -2.38 -0.01 1.68 16 31 H 0.06 2.48 6.98 -2.39 -0.02 2.46 16 32 H 0.07 2.40 6.31 -2.39 -0.02 2.39 16 33 H -0.01 -0.70 6.02 -2.39 -0.01 -0.71 16 34 H 0.00 -0.27 7.91 -2.38 -0.02 -0.29 16 35 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 36 H 0.07 2.21 6.05 -2.38 -0.01 2.20 16 37 H 0.07 2.52 7.92 -2.39 -0.02 2.50 16 38 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 41 H 0.17 1.60 8.06 -2.91 -0.02 1.57 16 42 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 43 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -69.08 343.51 1.92 -67.16 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.99 Total: 15.21 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 4.50 Total: -24.50 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -3.91 Total: -83.38 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -1.69 Total: -21.46 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -69.08 1.92 -67.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052922978.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.723 kcal (2) G-P(sol) polarization free energy of solvation -69.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds