Wall clock time and date at job start Tue Mar 31 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 N 1.46897 * 109.47351 * 185.24954 * 3 2 1 5 5 C 1.46901 * 110.99804 * 69.16833 * 4 3 2 6 6 C 1.50702 * 109.46986 * 76.31719 * 5 4 3 7 7 H 1.07997 * 119.99952 * 356.88422 * 6 5 4 8 8 C 1.37878 * 119.99644 * 176.88244 * 6 5 4 9 9 N 1.31514 * 120.00493 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99553 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47180 * 60.00215 * 10 8 6 12 12 H 1.48507 * 109.46900 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47101 * 300.00215 * 10 8 6 14 14 C 1.46901 * 110.99596 * 305.22080 * 4 3 2 15 15 C 1.53001 * 109.46842 * 293.94456 * 14 4 3 16 16 H 1.08999 * 109.69825 * 60.00774 * 15 14 4 17 17 C 1.53471 * 109.70675 * 180.57986 * 15 14 4 18 18 O 1.43166 * 108.23686 * 179.38961 * 17 15 14 19 19 C 1.36113 * 116.72751 * 313.82355 * 18 17 15 20 20 C 1.38705 * 119.39035 * 197.14698 * 19 18 17 21 21 C 1.38189 * 120.06338 * 180.18578 * 20 19 18 22 22 C 1.38250 * 120.11574 * 359.97438 * 21 20 19 23 23 C 1.38200 * 120.11538 * 359.94852 * 22 21 20 24 24 C 1.38713 * 120.06342 * 0.02562 * 23 22 21 25 25 O 1.36106 * 119.39724 * 180.15583 * 24 23 22 26 26 H 1.09004 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47209 * 300.00034 * 1 2 3 28 28 H 1.09000 * 109.46745 * 60.00278 * 1 2 3 29 29 H 1.09000 * 109.46745 * 119.99722 * 2 1 3 30 30 H 1.08997 * 109.47268 * 239.99426 * 2 1 3 31 31 H 1.09007 * 109.46969 * 305.25267 * 3 2 1 32 32 H 1.08996 * 109.47216 * 65.24251 * 3 2 1 33 33 H 1.09002 * 109.47092 * 196.31245 * 5 4 3 34 34 H 1.09000 * 109.47194 * 316.31468 * 5 4 3 35 35 H 0.96997 * 120.00099 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47583 * 53.95599 * 14 4 3 37 37 H 1.09000 * 109.46809 * 173.95515 * 14 4 3 38 38 H 1.08994 * 109.71424 * 299.13495 * 17 15 14 39 39 H 1.09003 * 109.70384 * 59.76174 * 17 15 14 40 40 H 1.07995 * 119.96445 * 0.16794 * 20 19 18 41 41 H 1.08006 * 119.94538 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.94880 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.97223 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5035 1.4444 -0.1267 5 6 3.9168 0.9967 -1.4634 6 6 3.6950 2.1085 -2.4564 7 1 3.2413 3.0351 -2.1371 8 6 4.0714 1.9426 -3.7723 9 7 4.6235 0.8141 -4.1612 10 14 3.7959 3.3205 -5.0033 11 1 4.5392 4.5299 -4.5672 12 1 4.2829 2.8948 -6.3401 13 1 2.3460 3.6320 -5.0813 14 6 4.1236 0.6204 0.9195 15 6 3.8758 1.2608 2.2868 16 1 2.8038 1.3314 2.4706 17 6 4.5339 0.4117 3.3828 18 8 4.2955 1.0454 4.6442 19 6 4.5095 2.3882 4.7048 20 6 4.6488 3.0002 5.9417 21 6 4.8626 4.3633 6.0195 22 6 4.9389 5.1205 4.8653 23 6 4.8026 4.5167 3.6297 24 6 4.5883 3.1489 3.5444 25 8 4.4592 2.5679 2.3204 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.6019 1.9827 -0.8393 32 1 1.7554 1.9285 0.9332 33 1 4.9735 0.7300 -1.4467 34 1 3.3271 0.1272 -1.7538 35 1 4.8880 0.6974 -5.0871 36 1 3.6874 -0.3784 0.9015 37 1 5.1964 0.5516 0.7396 38 1 4.0989 -0.5877 3.3845 39 1 5.6068 0.3459 3.2022 40 1 4.5897 2.4110 6.8448 41 1 4.9704 4.8379 6.9837 42 1 5.1057 6.1856 4.9293 43 1 4.8630 5.1104 2.7295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052922980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:56 Heat of formation + Delta-G solvation = -45.415974 kcal Electronic energy + Delta-G solvation = -23715.976972 eV Core-core repulsion = 20340.851627 eV Total energy + Delta-G solvation = -3375.125345 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.16297 -38.17613 -37.35136 -36.77239 -32.89839 -32.57503 -31.13166 -30.58405 -28.77836 -27.16558 -26.08517 -24.54456 -23.03088 -22.51926 -22.13198 -20.55306 -19.42455 -18.49775 -17.43442 -16.72183 -16.17288 -15.55450 -15.16238 -15.00339 -14.76777 -14.53541 -14.32426 -14.12827 -13.78256 -13.68672 -13.42140 -13.29508 -12.82414 -12.27311 -11.93298 -11.85440 -11.61074 -11.41440 -11.30458 -11.12560 -11.05655 -10.92301 -10.78963 -10.64991 -10.44597 -10.25608 -10.06171 -9.68359 -9.25968 -8.60465 -8.40756 -7.96604 -7.21525 -6.01201 -4.01609 1.31877 1.36763 3.10585 3.34605 3.34993 3.38695 3.42375 3.76975 4.20500 4.45140 4.64863 4.86818 4.90164 5.00681 5.10196 5.19321 5.29170 5.33995 5.37071 5.37966 5.46103 5.49359 5.53652 5.72999 5.76408 5.91593 5.99148 6.10669 6.16459 6.19296 6.26862 6.27686 6.39814 6.47413 6.57510 6.66737 6.79859 7.03952 7.21572 7.32922 7.59626 7.81658 8.08713 8.17493 8.52551 9.05375 9.62063 11.09314 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.004234 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.390973 B = 6610.937405 C = 7481.502547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.166 4.166 3 C 0.061 3.939 4 N -0.523 5.523 5 C 0.190 3.810 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.901 5.901 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.058 3.942 15 C 0.060 3.940 16 H 0.082 0.918 17 C 0.025 3.975 18 O -0.310 6.310 19 C 0.041 3.959 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.116 4.116 24 C 0.062 3.938 25 O -0.275 6.275 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.029 0.971 34 H -0.001 1.001 35 H 0.261 0.739 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 1.086 18.101 18.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.205 4.205 3 C -0.068 4.068 4 N -0.245 5.245 5 C 0.066 3.934 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.071 4.071 15 C 0.003 3.997 16 H 0.099 0.901 17 C -0.051 4.051 18 O -0.225 6.225 19 C -0.004 4.004 20 C -0.136 4.136 21 C -0.146 4.146 22 C -0.135 4.135 23 C -0.135 4.135 24 C 0.016 3.984 25 O -0.188 6.188 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.096 0.904 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.751 1.427 17.929 18.071 hybrid contribution -0.384 -0.368 -0.970 1.106 sum -2.135 1.059 16.959 17.126 Atomic orbital electron populations 1.21656 0.96135 1.00831 1.01518 1.22225 0.96056 1.00398 1.01795 1.22148 0.88908 0.94282 1.01442 1.62305 1.06070 1.51607 1.04549 1.19811 0.95770 0.95254 0.82601 1.21105 1.39545 1.00837 0.92491 0.91951 1.24964 0.95415 0.95808 0.98401 1.69938 1.42233 1.24722 1.17237 0.86574 0.78505 0.82343 0.80067 1.20174 1.21429 1.20324 1.22079 1.01308 0.94389 0.89293 1.23274 0.97356 0.81997 0.97100 0.90053 1.23681 1.01873 0.97201 0.82374 1.86258 1.84512 1.17920 1.33804 1.18977 1.04331 0.83208 0.93917 1.20376 1.03169 0.94948 0.95070 1.20828 1.02263 0.92861 0.98645 1.20897 1.01201 0.99963 0.91473 1.20543 1.02827 0.91162 0.98976 1.19166 1.01732 0.93001 0.84549 1.86597 1.77218 1.31260 1.23755 0.93485 0.93365 0.92516 0.93051 0.90911 0.89887 0.92929 0.95335 0.98354 0.92937 0.92846 0.90149 0.86255 0.90405 0.85285 0.85500 0.85376 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.17 -2.68 5.13 -26.73 -0.14 -2.82 16 3 C 0.06 1.13 4.92 -3.83 -0.02 1.11 16 4 N -0.52 -10.92 4.51 -236.07 -1.06 -11.98 16 5 C 0.19 4.80 4.65 -4.97 -0.02 4.77 16 6 C -0.50 -13.98 8.62 -34.44 -0.30 -14.27 16 7 H 0.06 1.75 7.73 -52.49 -0.41 1.34 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.06 0.99 4.30 -3.82 -0.02 0.97 16 15 C 0.06 0.92 2.88 -26.49 -0.08 0.84 16 16 H 0.08 1.25 6.68 -51.93 -0.35 0.90 16 17 C 0.02 0.31 6.56 37.40 0.25 0.56 16 18 O -0.31 -4.41 10.42 -32.88 -0.34 -4.75 16 19 C 0.04 0.59 6.49 -39.14 -0.25 0.34 16 20 C -0.12 -1.41 9.96 -39.43 -0.39 -1.81 16 21 C -0.13 -1.35 10.04 -39.60 -0.40 -1.75 16 22 C -0.12 -1.31 10.04 -39.59 -0.40 -1.71 16 23 C -0.12 -1.62 9.96 -39.42 -0.39 -2.01 16 24 C 0.06 0.97 6.49 -39.14 -0.25 0.72 16 25 O -0.27 -4.87 9.95 -32.86 -0.33 -5.20 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.74 6.52 -51.93 -0.34 0.41 16 30 H 0.07 1.36 6.25 -51.93 -0.32 1.03 16 31 H 0.08 1.71 7.41 -51.92 -0.38 1.33 16 32 H 0.05 0.91 6.73 -51.93 -0.35 0.56 16 33 H 0.03 0.78 7.72 -51.93 -0.40 0.38 16 34 H 0.00 -0.03 6.05 -51.93 -0.31 -0.35 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.05 0.82 5.99 -51.93 -0.31 0.51 16 37 H 0.08 1.41 7.82 -51.93 -0.41 1.01 16 38 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -30.90 344.62 -9.49 -40.39 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.52 Total: 0.65 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.14 Total: -15.22 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.33 Total: -37.77 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: -0.67 Total: -9.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.90 -9.49 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052922980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.022 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds