Wall clock time and date at job start Tue Mar 31 2020 06:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47137 * 2 1 4 4 N 1.46897 * 109.47351 * 185.24954 * 3 2 1 5 5 C 1.46901 * 110.99804 * 69.16833 * 4 3 2 6 6 C 1.50702 * 109.46986 * 76.31719 * 5 4 3 7 7 H 1.07997 * 119.99952 * 356.88422 * 6 5 4 8 8 C 1.37878 * 119.99644 * 176.88244 * 6 5 4 9 9 N 1.31514 * 120.00493 * 0.02562 * 8 6 5 10 10 Si 1.86809 * 119.99553 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47180 * 60.00215 * 10 8 6 12 12 H 1.48507 * 109.46900 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47101 * 300.00215 * 10 8 6 14 14 C 1.46901 * 110.99596 * 305.22080 * 4 3 2 15 15 C 1.53001 * 109.46842 * 293.94456 * 14 4 3 16 16 H 1.08999 * 109.69825 * 60.00774 * 15 14 4 17 17 C 1.53471 * 109.70675 * 180.57986 * 15 14 4 18 18 O 1.43166 * 108.23686 * 179.38961 * 17 15 14 19 19 C 1.36113 * 116.72751 * 313.82355 * 18 17 15 20 20 C 1.38705 * 119.39035 * 197.14698 * 19 18 17 21 21 C 1.38189 * 120.06338 * 180.18578 * 20 19 18 22 22 C 1.38250 * 120.11574 * 359.97438 * 21 20 19 23 23 C 1.38200 * 120.11538 * 359.94852 * 22 21 20 24 24 C 1.38713 * 120.06342 * 0.02562 * 23 22 21 25 25 O 1.36106 * 119.39724 * 180.15583 * 24 23 22 26 26 H 1.09004 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47209 * 300.00034 * 1 2 3 28 28 H 1.09000 * 109.46745 * 60.00278 * 1 2 3 29 29 H 1.09000 * 109.46745 * 119.99722 * 2 1 3 30 30 H 1.08997 * 109.47268 * 239.99426 * 2 1 3 31 31 H 1.09007 * 109.46969 * 305.25267 * 3 2 1 32 32 H 1.08996 * 109.47216 * 65.24251 * 3 2 1 33 33 H 1.09002 * 109.47092 * 196.31245 * 5 4 3 34 34 H 1.09000 * 109.47194 * 316.31468 * 5 4 3 35 35 H 0.96997 * 120.00099 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.47583 * 53.95599 * 14 4 3 37 37 H 1.09000 * 109.46809 * 173.95515 * 14 4 3 38 38 H 1.08994 * 109.71424 * 299.13495 * 17 15 14 39 39 H 1.09003 * 109.70384 * 59.76174 * 17 15 14 40 40 H 1.07995 * 119.96445 * 0.16794 * 20 19 18 41 41 H 1.08006 * 119.94538 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.94880 * 179.97438 * 22 21 20 43 43 H 1.08000 * 119.97223 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5035 1.4444 -0.1267 5 6 3.9168 0.9967 -1.4634 6 6 3.6950 2.1085 -2.4564 7 1 3.2413 3.0351 -2.1371 8 6 4.0714 1.9426 -3.7723 9 7 4.6235 0.8141 -4.1612 10 14 3.7959 3.3205 -5.0033 11 1 4.5392 4.5299 -4.5672 12 1 4.2829 2.8948 -6.3401 13 1 2.3460 3.6320 -5.0813 14 6 4.1236 0.6204 0.9195 15 6 3.8758 1.2608 2.2868 16 1 2.8038 1.3314 2.4706 17 6 4.5339 0.4117 3.3828 18 8 4.2955 1.0454 4.6442 19 6 4.5095 2.3882 4.7048 20 6 4.6488 3.0002 5.9417 21 6 4.8626 4.3633 6.0195 22 6 4.9389 5.1205 4.8653 23 6 4.8026 4.5167 3.6297 24 6 4.5883 3.1489 3.5444 25 8 4.4592 2.5679 2.3204 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.6019 1.9827 -0.8393 32 1 1.7554 1.9285 0.9332 33 1 4.9735 0.7300 -1.4467 34 1 3.3271 0.1272 -1.7538 35 1 4.8880 0.6974 -5.0871 36 1 3.6874 -0.3784 0.9015 37 1 5.1964 0.5516 0.7396 38 1 4.0989 -0.5877 3.3845 39 1 5.6068 0.3459 3.2022 40 1 4.5897 2.4110 6.8448 41 1 4.9704 4.8379 6.9837 42 1 5.1057 6.1856 4.9293 43 1 4.8630 5.1104 2.7295 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052922980.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:55 Heat of formation + Delta-G solvation = -64.401147 kcal Electronic energy + Delta-G solvation = -23716.800231 eV Core-core repulsion = 20340.851627 eV Total energy + Delta-G solvation = -3375.948604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24149 -39.52715 -38.42308 -38.02040 -34.92862 -33.87580 -32.54104 -31.56199 -29.95280 -28.92393 -27.37849 -26.06576 -24.34176 -23.69794 -23.58244 -21.73392 -20.86840 -19.63517 -18.49460 -18.39911 -17.70321 -17.01323 -16.57204 -16.23721 -16.10231 -15.93596 -15.53267 -15.26407 -15.05491 -14.89837 -14.78659 -14.56279 -14.21349 -13.86577 -13.32052 -12.96871 -12.91799 -12.82451 -12.71909 -12.63524 -12.50487 -12.40067 -12.24182 -12.11800 -11.98066 -11.73903 -11.46923 -11.35385 -11.13745 -10.58088 -9.58835 -9.00952 -8.88997 -8.18368 -6.27436 0.34974 0.38908 1.39539 1.42440 1.50279 2.07023 2.28204 2.40184 2.79944 3.01944 3.13421 3.46056 3.72931 3.76012 3.80951 4.04993 4.08632 4.17253 4.23624 4.31704 4.40121 4.43509 4.46770 4.50822 4.61912 4.64000 4.74632 4.81987 4.95497 5.01275 5.07870 5.11880 5.26302 5.27036 5.28248 5.35805 5.46212 5.55502 5.66922 5.77669 5.99679 6.09506 6.38792 6.50560 6.63203 6.86715 7.41134 8.91097 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.004234 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.390973 B = 6610.937405 C = 7481.502547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.158 4.158 3 C 0.065 3.935 4 N -0.539 5.539 5 C 0.208 3.792 6 C -0.519 4.519 7 H 0.054 0.946 8 C 0.005 3.995 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.268 1.268 14 C 0.061 3.939 15 C 0.065 3.935 16 H 0.082 0.918 17 C 0.030 3.970 18 O -0.315 6.315 19 C 0.021 3.979 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.136 4.136 24 C 0.029 3.971 25 O -0.310 6.310 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.069 0.931 33 H -0.001 1.001 34 H -0.017 1.017 35 H 0.264 0.736 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.152 0.848 39 H 0.078 0.922 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 1.829 20.453 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C -0.063 4.063 4 N -0.262 5.262 5 C 0.082 3.918 6 C -0.558 4.558 7 H 0.072 0.928 8 C -0.193 4.193 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.193 1.193 14 C -0.067 4.067 15 C 0.008 3.992 16 H 0.099 0.901 17 C -0.046 4.046 18 O -0.230 6.230 19 C -0.023 4.023 20 C -0.138 4.138 21 C -0.133 4.133 22 C -0.129 4.129 23 C -0.155 4.155 24 C -0.016 4.016 25 O -0.224 6.224 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.017 0.983 34 H 0.001 0.999 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.169 0.831 41 H 0.184 0.816 42 H 0.176 0.824 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.468 2.173 20.308 20.573 hybrid contribution -0.135 -0.538 -1.589 1.683 sum -2.603 1.636 18.719 18.970 Atomic orbital electron populations 1.21622 0.93977 1.02160 1.01897 1.22116 0.97922 0.98277 1.01343 1.22090 0.87385 0.95861 1.00953 1.62142 1.07839 1.52862 1.03350 1.19413 0.93642 0.93961 0.84797 1.21412 1.39556 1.01182 0.93611 0.92758 1.25808 0.94994 0.98230 1.00289 1.70053 1.43021 1.26562 1.17760 0.85532 0.78815 0.79211 0.77638 1.19768 1.20650 1.19325 1.22085 1.00300 0.95105 0.89215 1.23179 0.97536 0.81961 0.96483 0.90068 1.23762 1.01926 0.97833 0.81078 1.86242 1.84729 1.17945 1.34051 1.19276 1.05282 0.83349 0.94424 1.20785 1.02224 0.95935 0.94850 1.21312 0.99788 0.92222 1.00026 1.21284 0.99556 1.01538 0.90513 1.20755 1.03822 0.90791 1.00134 1.19475 1.03965 0.93891 0.84303 1.86520 1.78005 1.32348 1.25564 0.91680 0.91554 0.93587 0.90823 0.93874 0.92665 0.91271 0.98261 0.99941 0.92744 0.90808 0.91481 0.83071 0.90426 0.83149 0.81630 0.82364 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.94 16 2 C -0.16 -5.06 5.13 30.59 0.16 -4.91 16 3 C 0.07 2.47 4.92 86.30 0.42 2.90 16 4 N -0.54 -23.41 4.51 -900.80 -4.06 -27.47 16 5 C 0.21 11.02 4.65 85.56 0.40 11.42 16 6 C -0.52 -30.07 8.62 25.60 0.22 -29.85 16 7 H 0.05 3.16 7.73 -2.91 -0.02 3.14 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 10 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 C 0.06 2.13 4.30 86.30 0.37 2.50 16 15 C 0.07 2.00 2.88 30.75 0.09 2.09 16 16 H 0.08 2.44 6.68 -2.39 -0.02 2.43 16 17 C 0.03 0.72 6.56 72.14 0.47 1.20 16 18 O -0.31 -8.52 10.42 -82.61 -0.86 -9.38 16 19 C 0.02 0.60 6.49 22.56 0.15 0.75 16 20 C -0.12 -2.58 9.96 22.37 0.22 -2.35 16 21 C -0.12 -2.03 10.04 22.26 0.22 -1.81 16 22 C -0.11 -2.22 10.04 22.26 0.22 -1.99 16 23 C -0.14 -3.77 9.96 22.37 0.22 -3.54 16 24 C 0.03 0.92 6.49 22.56 0.15 1.06 16 25 O -0.31 -11.33 9.95 -82.54 -0.82 -12.15 16 26 H 0.06 1.48 8.14 -2.38 -0.02 1.47 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 2.02 6.52 -2.39 -0.02 2.00 16 30 H 0.04 1.65 6.25 -2.39 -0.01 1.63 16 31 H 0.05 2.37 7.41 -2.38 -0.02 2.35 16 32 H 0.07 2.38 6.73 -2.39 -0.02 2.37 16 33 H 0.00 -0.04 7.72 -2.39 -0.02 -0.06 16 34 H -0.02 -0.94 6.05 -2.39 -0.01 -0.95 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.07 2.24 5.99 -2.39 -0.01 2.22 16 37 H 0.07 2.48 7.82 -2.39 -0.02 2.46 16 38 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 41 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -69.64 344.62 2.05 -67.59 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.99 Total: 15.00 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 4.50 Total: -24.75 kcal Atomic # 7 Polarization: -79.78 SS G_CDS: -3.78 Total: -83.56 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -1.68 Total: -21.53 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -69.64 2.05 -67.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052922980.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.186 kcal (2) G-P(sol) polarization free energy of solvation -69.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds