Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31519 * 119.99989 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47077 * 89.99770 * 9 7 5 11 11 H 1.48500 * 109.46835 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99460 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 C 1.38265 * 119.94382 * 269.73026 * 18 17 16 20 20 C 1.38142 * 120.05590 * 179.72446 * 19 18 17 21 21 C 1.38729 * 119.94316 * 0.56380 * 20 19 18 22 22 O 1.35906 * 120.05689 * 179.68644 * 21 20 19 23 23 C 1.42906 * 116.99637 * 0.02562 * 22 21 20 24 24 C 1.38733 * 119.89038 * 359.70304 * 21 20 19 25 25 C 1.38140 * 119.94271 * 0.02562 * 24 21 20 26 26 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 29 29 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 30 30 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 31 31 H 0.97002 * 119.99452 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 36 36 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 37 37 H 1.08004 * 119.96818 * 359.97064 * 19 18 17 38 38 H 1.08005 * 120.02468 * 180.24575 * 20 19 18 39 39 H 1.08991 * 109.47079 * 300.00152 * 23 22 21 40 40 H 1.09000 * 109.47089 * 60.00584 * 23 22 21 41 41 H 1.08998 * 109.46732 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.02816 * 179.97438 * 24 21 20 43 43 H 1.07997 * 119.97714 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7879 4.5532 -3.8144 19 6 -1.5360 5.8999 -4.0006 20 6 -1.8973 6.5142 -5.1840 21 6 -2.5240 5.7813 -6.1814 22 8 -2.8863 6.3847 -7.3440 23 6 -2.5905 7.7770 -7.4718 24 6 -2.7807 4.4314 -5.9899 25 6 -2.4123 3.8206 -4.8069 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8771 0.4810 2.1123 32 1 2.2719 2.1232 -1.9977 33 1 0.7225 4.1501 -2.8716 34 1 0.0680 2.6061 -3.4682 35 1 -2.0754 3.0670 -2.3098 36 1 -1.4210 4.6110 -1.7131 37 1 -1.0527 6.4711 -3.2218 38 1 -1.6968 7.5652 -5.3306 39 1 -3.1001 8.3305 -6.6833 40 1 -1.5146 7.9292 -7.3857 41 1 -2.9315 8.1330 -8.4440 42 1 -3.2688 3.8588 -6.7647 43 1 -2.6122 2.7699 -4.6571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = -62.127748 kcal Electronic energy + Delta-G solvation = -22584.204087 eV Core-core repulsion = 19208.354065 eV Total energy + Delta-G solvation = -3375.850022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.36024 -39.26612 -37.88102 -35.41421 -33.40936 -32.35302 -31.50596 -31.25049 -29.34082 -27.76718 -27.21463 -24.31566 -22.82381 -22.58459 -21.23677 -20.33627 -19.50161 -18.37462 -17.29153 -16.52384 -16.05995 -15.99046 -15.71577 -15.23860 -15.09424 -14.48576 -14.20501 -14.05123 -13.71877 -13.48446 -13.20616 -12.91409 -12.80079 -12.27904 -12.23180 -12.08783 -11.85732 -11.74444 -11.39708 -11.17990 -11.08070 -11.01109 -10.87256 -10.75471 -10.59593 -9.91540 -9.54801 -9.21804 -9.17264 -9.06688 -8.74380 -8.22902 -8.02423 -6.20583 -4.22814 1.17174 1.24646 3.01668 3.23555 3.30972 3.35746 3.41036 3.55852 4.05002 4.32141 4.56772 4.67550 4.80276 4.82010 4.86403 5.11966 5.12752 5.14531 5.19339 5.23918 5.35659 5.46599 5.56960 5.79249 5.81716 5.98460 6.00059 6.04252 6.10397 6.18877 6.21328 6.24899 6.57445 6.59934 6.67409 6.71532 6.86871 6.97587 7.16012 7.29482 7.33843 7.54462 8.17880 8.56809 8.77303 9.00212 9.40850 10.91550 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035346 B = 0.002742 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.987687 B =10209.259966 C =10582.363916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.884 3.116 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.703 5.703 14 C 0.501 3.499 15 O -0.553 6.553 16 C -0.136 4.136 17 C -0.060 4.060 18 C -0.112 4.112 19 C -0.076 4.076 20 C -0.206 4.206 21 C 0.116 3.884 22 O -0.321 6.321 23 C 0.028 3.972 24 C -0.150 4.150 25 C -0.077 4.077 26 H 0.052 0.948 27 H 0.030 0.970 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.267 0.733 32 H 0.394 0.606 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.098 0.902 42 H 0.129 0.871 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.153 9.901 -15.602 23.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.351 5.351 14 C 0.286 3.714 15 O -0.432 6.432 16 C -0.176 4.176 17 C -0.098 4.098 18 C -0.112 4.112 19 C -0.094 4.094 20 C -0.225 4.225 21 C 0.072 3.928 22 O -0.234 6.234 23 C -0.067 4.067 24 C -0.169 4.169 25 C -0.095 4.095 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.614 9.744 -14.975 23.728 hybrid contribution 0.158 -0.220 0.420 0.500 sum -15.456 9.525 -14.554 23.269 Atomic orbital electron populations 1.21870 0.96938 0.98943 1.02273 1.22282 0.94368 1.00029 1.01018 1.19126 0.95516 0.88480 0.83085 0.93401 1.21071 0.88719 1.39676 1.07772 0.90253 1.24846 0.94869 0.95179 0.97703 1.69876 1.08691 1.44596 1.29842 0.86892 0.80964 0.79944 0.80858 1.20269 1.22216 1.18457 1.46193 1.15069 1.55933 1.17863 1.20488 0.82422 0.79059 0.89389 1.90660 1.51562 1.60070 1.40929 1.21670 0.97805 1.01312 0.96859 1.20264 0.95438 1.00526 0.93533 1.19931 1.00529 0.93942 0.96825 1.20908 0.97776 0.94314 0.96451 1.21217 1.05581 1.00407 0.95252 1.19036 0.95697 0.92654 0.85454 1.86057 1.77813 1.24702 1.34878 1.23036 1.00985 0.79656 1.03058 1.20416 1.05270 0.92068 0.99116 1.20925 0.96691 0.99845 0.92037 0.92876 0.95069 0.92913 0.92364 0.92876 0.92317 0.77245 0.89323 0.89378 0.90284 0.90290 0.85606 0.85620 0.92709 0.92622 0.88365 0.85346 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.51 37.16 0.32 -2.54 16 2 C -0.14 -3.07 5.11 -26.73 -0.14 -3.20 16 3 C 0.24 5.68 1.83 -69.08 -0.13 5.56 16 4 H 0.05 1.25 6.64 -51.93 -0.34 0.91 16 5 C -0.53 -14.39 9.31 -34.44 -0.32 -14.71 16 6 H 0.08 2.25 7.98 -52.48 -0.42 1.83 16 7 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 9 Si 0.88 21.82 24.41 -169.99 -4.15 17.67 16 10 H -0.28 -6.61 6.83 56.52 0.39 -6.22 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.70 -13.56 5.02 -54.93 -0.28 -13.83 16 14 C 0.50 8.90 6.40 -10.98 -0.07 8.82 16 15 O -0.55 -11.59 13.12 5.55 0.07 -11.51 16 16 C -0.14 -1.74 5.68 -27.88 -0.16 -1.90 16 17 C -0.06 -0.73 4.63 -27.89 -0.13 -0.86 16 18 C -0.11 -1.23 5.14 -104.60 -0.54 -1.77 16 19 C -0.08 -0.79 9.69 -39.61 -0.38 -1.18 16 20 C -0.21 -2.02 9.04 -39.44 -0.36 -2.38 16 21 C 0.12 1.24 6.69 -39.22 -0.26 0.97 16 22 O -0.32 -3.19 10.50 -19.44 -0.20 -3.39 16 23 C 0.03 0.17 9.81 101.05 0.99 1.16 16 24 C -0.15 -1.55 9.99 -39.43 -0.39 -1.95 16 25 C -0.08 -0.79 9.69 -39.61 -0.38 -1.18 16 26 H 0.05 1.03 5.64 -51.93 -0.29 0.73 16 27 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.24 3.21 -51.93 -0.17 1.08 16 31 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.39 6.74 8.54 -40.82 -0.35 6.39 16 33 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 36 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 37 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.13 0.96 6.30 -52.48 -0.33 0.63 16 39 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 40 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 41 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -31.97 345.20 -7.14 -39.11 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.51 Total: 5.55 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -2.05 Total: -13.08 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.50 Total: -39.54 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.13 Total: -14.91 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.15 Total: 17.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.97 -7.14 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.017 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds