Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47155 * 2 1 4 4 H 1.09007 * 109.46641 * 55.00602 * 3 2 1 5 5 C 1.50697 * 109.46811 * 174.99949 * 3 2 1 6 6 H 1.08011 * 119.99571 * 120.00749 * 5 3 2 7 7 C 1.37871 * 120.00501 * 299.99850 * 5 3 2 8 8 N 1.31519 * 119.99989 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99795 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.47077 * 89.99770 * 9 7 5 11 11 H 1.48500 * 109.46835 * 209.99686 * 9 7 5 12 12 H 1.48499 * 109.47044 * 329.99460 * 9 7 5 13 13 N 1.46499 * 109.47070 * 295.00511 * 3 2 1 14 14 C 1.34777 * 120.00199 * 85.00207 * 13 3 2 15 15 O 1.21283 * 119.99750 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99928 * 180.27479 * 14 13 3 17 17 C 1.52996 * 109.47159 * 179.72352 * 16 14 13 18 18 C 1.50697 * 109.47491 * 179.97438 * 17 16 14 19 19 C 1.38265 * 119.94382 * 269.73026 * 18 17 16 20 20 C 1.38142 * 120.05590 * 179.72446 * 19 18 17 21 21 C 1.38729 * 119.94316 * 0.56380 * 20 19 18 22 22 O 1.35906 * 120.05689 * 179.68644 * 21 20 19 23 23 C 1.42906 * 116.99637 * 0.02562 * 22 21 20 24 24 C 1.38733 * 119.89038 * 359.70304 * 21 20 19 25 25 C 1.38140 * 119.94271 * 0.02562 * 24 21 20 26 26 H 1.08994 * 109.47555 * 59.99581 * 1 2 3 27 27 H 1.09005 * 109.47275 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46996 * 299.99254 * 1 2 3 29 29 H 1.09001 * 109.46482 * 240.00197 * 2 1 3 30 30 H 1.08999 * 109.47118 * 120.00214 * 2 1 3 31 31 H 0.97002 * 119.99452 * 180.02562 * 8 7 5 32 32 H 0.97000 * 119.99484 * 264.99304 * 13 3 2 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 13 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 13 35 35 H 1.09004 * 109.47066 * 299.99797 * 17 16 14 36 36 H 1.09000 * 109.47234 * 59.99288 * 17 16 14 37 37 H 1.08004 * 119.96818 * 359.97064 * 19 18 17 38 38 H 1.08005 * 120.02468 * 180.24575 * 20 19 18 39 39 H 1.08991 * 109.47079 * 300.00152 * 23 22 21 40 40 H 1.09000 * 109.47089 * 60.00584 * 23 22 21 41 41 H 1.08998 * 109.46732 * 180.02562 * 23 22 21 42 42 H 1.08000 * 120.02816 * 179.97438 * 24 21 20 43 43 H 1.07997 * 119.97714 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 5.4541 0.8794 1.3356 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7938 0.2347 3.8751 12 1 1.7878 0.8074 2.6387 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6645 -1.3668 15 8 -0.3396 2.6320 -0.4342 16 6 0.0340 3.3328 -2.6566 17 6 -1.3870 3.8843 -2.5249 18 6 -1.7879 4.5532 -3.8144 19 6 -1.5360 5.8999 -4.0006 20 6 -1.8973 6.5142 -5.1840 21 6 -2.5240 5.7813 -6.1814 22 8 -2.8863 6.3847 -7.3440 23 6 -2.5905 7.7770 -7.4718 24 6 -2.7807 4.4314 -5.9899 25 6 -2.4123 3.8206 -4.8069 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8771 0.4810 2.1123 32 1 2.2719 2.1232 -1.9977 33 1 0.7225 4.1501 -2.8716 34 1 0.0680 2.6061 -3.4682 35 1 -2.0754 3.0670 -2.3098 36 1 -1.4210 4.6110 -1.7131 37 1 -1.0527 6.4711 -3.2218 38 1 -1.6968 7.5652 -5.3306 39 1 -3.1001 8.3305 -6.6833 40 1 -1.5146 7.9292 -7.3857 41 1 -2.9315 8.1330 -8.4440 42 1 -3.2688 3.8588 -6.7647 43 1 -2.6122 2.7699 -4.6571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177410.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = -82.708213 kcal Electronic energy + Delta-G solvation = -22585.096523 eV Core-core repulsion = 19208.354065 eV Total energy + Delta-G solvation = -3376.742458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13761 -40.68661 -38.67139 -37.12305 -34.45249 -34.35823 -33.11605 -31.99510 -30.32325 -29.29213 -28.08821 -25.46104 -24.37566 -23.54430 -22.45734 -21.61423 -21.06243 -19.09534 -19.03735 -17.64648 -17.50063 -17.22351 -16.61290 -16.51184 -16.20224 -15.90613 -15.32097 -15.13065 -14.86486 -14.73918 -14.47495 -14.19421 -13.89627 -13.75100 -13.65750 -13.39381 -13.00474 -12.86001 -12.78004 -12.74428 -12.41871 -12.24339 -11.97300 -11.84565 -11.78748 -11.59514 -11.36247 -11.21524 -10.85629 -10.58635 -9.92184 -9.69581 -9.01079 -8.37871 -6.42908 0.42372 0.45891 1.26810 1.34911 1.44864 1.88939 2.26154 2.41563 2.55225 2.85054 2.98179 3.83096 3.87428 3.99572 4.15257 4.20573 4.25986 4.33846 4.36785 4.38504 4.40669 4.49566 4.53646 4.58055 4.72069 4.75197 4.80371 4.89686 4.98659 5.03135 5.15358 5.17083 5.24459 5.28155 5.36128 5.43450 5.44032 5.54667 5.72902 5.76259 5.86060 6.16715 6.47831 6.59780 6.97251 7.21106 7.56437 8.77399 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.035346 B = 0.002742 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.987687 B =10209.259966 C =10582.363916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C 0.248 3.752 4 H 0.020 0.980 5 C -0.532 4.532 6 H 0.056 0.944 7 C 0.028 3.972 8 N -0.935 5.935 9 Si 0.937 3.063 10 H -0.260 1.260 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.705 5.705 14 C 0.500 3.500 15 O -0.585 6.585 16 C -0.123 4.123 17 C -0.052 4.052 18 C -0.121 4.121 19 C -0.083 4.083 20 C -0.209 4.209 21 C 0.107 3.893 22 O -0.337 6.337 23 C 0.019 3.981 24 C -0.162 4.162 25 C -0.079 4.079 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.041 0.959 31 H 0.269 0.731 32 H 0.406 0.594 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.135 0.865 38 H 0.145 0.855 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.118 0.882 42 H 0.138 0.862 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.641 10.025 -16.906 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.176 4.176 3 C 0.143 3.857 4 H 0.038 0.962 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.172 4.172 8 N -0.574 5.574 9 Si 0.765 3.235 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.354 5.354 14 C 0.288 3.712 15 O -0.466 6.466 16 C -0.163 4.163 17 C -0.089 4.089 18 C -0.122 4.122 19 C -0.101 4.101 20 C -0.227 4.227 21 C 0.062 3.938 22 O -0.251 6.251 23 C -0.076 4.076 24 C -0.180 4.180 25 C -0.097 4.097 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.241 0.759 33 H 0.123 0.877 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.156 0.844 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.114 9.880 -16.315 25.626 hybrid contribution 0.615 -0.139 0.723 0.960 sum -16.498 9.741 -15.592 24.702 Atomic orbital electron populations 1.21756 0.95078 1.00476 1.01694 1.22203 0.95962 0.98539 1.00885 1.18749 0.92988 0.89678 0.84257 0.96181 1.21329 0.90549 1.38328 1.06820 0.92620 1.25564 0.95729 0.95968 0.99909 1.69985 1.10271 1.46283 1.30876 0.86022 0.79287 0.79926 0.78298 1.18611 1.22172 1.18508 1.46071 1.16197 1.56292 1.16815 1.21305 0.81183 0.78061 0.90650 1.90650 1.52299 1.61042 1.42587 1.21651 0.98423 1.01887 0.94313 1.20134 0.94818 1.00037 0.93949 1.19831 1.01630 0.94315 0.96400 1.21089 0.97798 0.94286 0.96971 1.21430 1.05123 1.01399 0.94786 1.19258 0.95627 0.93002 0.85896 1.86038 1.77895 1.26594 1.34612 1.23312 1.01740 0.77946 1.04560 1.20634 1.05486 0.92415 0.99483 1.21082 0.96283 1.00527 0.91800 0.92358 0.92422 0.94597 0.91362 0.94070 0.92137 0.75948 0.87655 0.87013 0.90944 0.91470 0.84706 0.83720 0.91878 0.91895 0.86411 0.84374 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 8.51 71.98 0.61 -4.43 16 2 C -0.14 -5.88 5.11 30.60 0.16 -5.73 16 3 C 0.25 11.61 1.83 44.24 0.08 11.69 16 4 H 0.02 1.07 6.64 -2.38 -0.02 1.05 16 5 C -0.53 -28.96 9.31 25.60 0.24 -28.72 16 6 H 0.06 3.22 7.98 -2.91 -0.02 3.20 16 7 C 0.03 1.58 5.45 84.65 0.46 2.04 16 8 N -0.94 -56.32 13.96 21.45 0.30 -56.02 16 9 Si 0.94 45.08 24.41 68.60 1.67 46.75 16 10 H -0.26 -11.79 6.83 99.48 0.68 -11.11 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.26 -12.45 6.53 99.48 0.65 -11.80 16 13 N -0.70 -26.54 5.02 -446.09 -2.24 -28.78 16 14 C 0.50 17.11 6.40 87.66 0.56 17.67 16 15 O -0.58 -24.10 13.12 -3.04 -0.04 -24.14 16 16 C -0.12 -2.88 5.68 29.85 0.17 -2.71 16 17 C -0.05 -1.18 4.63 29.85 0.14 -1.04 16 18 C -0.12 -2.46 5.14 -19.85 -0.10 -2.56 16 19 C -0.08 -1.58 9.69 22.25 0.22 -1.37 16 20 C -0.21 -3.70 9.04 22.36 0.20 -3.50 16 21 C 0.11 2.10 6.69 22.51 0.15 2.25 16 22 O -0.34 -6.15 10.50 -92.49 -0.97 -7.12 16 23 C 0.02 0.19 9.81 113.37 1.11 1.30 16 24 C -0.16 -3.09 9.99 22.37 0.22 -2.87 16 25 C -0.08 -1.48 9.69 22.25 0.22 -1.27 16 26 H 0.06 2.13 5.64 -2.39 -0.01 2.12 16 27 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.03 1.47 7.85 -2.38 -0.02 1.45 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.04 1.86 3.21 -2.39 -0.01 1.85 16 31 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 32 H 0.41 13.42 8.54 -92.71 -0.79 12.63 16 33 H 0.11 2.18 8.14 -2.38 -0.02 2.16 16 34 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 1.74 8.04 -2.38 -0.02 1.72 16 36 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 37 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.15 1.88 6.30 -2.91 -0.02 1.87 16 39 H 0.06 0.53 7.66 -2.39 -0.02 0.51 16 40 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 41 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -68.83 345.20 3.29 -65.54 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: 0.13 Total: 23.01 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: 4.44 Total: -19.24 kcal Atomic # 7 Polarization: -82.86 SS G_CDS: -1.94 Total: -84.80 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -1.01 Total: -31.26 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Total: -68.83 3.29 -65.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177410.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.169 kcal (2) G-P(sol) polarization free energy of solvation -68.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds