Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47032 * 180.02562 * 17 16 14 19 19 C 1.38267 * 119.94650 * 269.72681 * 18 17 16 20 20 C 1.38144 * 120.05787 * 179.72504 * 19 18 17 21 21 C 1.38734 * 119.94173 * 0.57518 * 20 19 18 22 22 O 1.35898 * 120.05824 * 179.68146 * 21 20 19 23 23 C 1.42903 * 116.99753 * 0.02562 * 22 21 20 24 24 C 1.38738 * 119.88645 * 359.70204 * 21 20 19 25 25 C 1.38145 * 119.94458 * 359.97438 * 24 21 20 26 26 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 27 27 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 29 29 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 30 30 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 31 31 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 32 32 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 33 33 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 34 34 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 35 35 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 36 36 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 37 37 H 1.08007 * 119.96777 * 359.97438 * 19 18 17 38 38 H 1.07996 * 120.03097 * 180.25201 * 20 19 18 39 39 H 1.08997 * 109.47223 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.47364 * 300.00255 * 23 22 21 41 41 H 1.08998 * 109.46858 * 60.00226 * 23 22 21 42 42 H 1.08003 * 120.02414 * 179.97438 * 24 21 20 43 43 H 1.07994 * 119.96727 * 180.02562 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7461 4.5560 3.8536 19 6 -2.3696 3.8264 4.8490 20 6 -2.7201 4.4365 6.0378 21 6 -2.4567 5.7853 6.2279 22 8 -2.8063 6.3894 7.3939 23 6 -3.4415 5.5750 8.3815 24 6 -1.8362 6.5165 5.2253 25 6 -1.4817 5.9001 4.0409 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.9548 0.8552 -0.5318 32 1 2.2902 2.1166 1.9978 33 1 0.0991 2.6017 3.4901 34 1 0.7539 4.1436 2.8885 35 1 -1.3974 4.6138 1.7493 36 1 -2.0528 3.0720 2.3506 37 1 -2.5792 2.7776 4.6985 38 1 -3.2034 3.8653 6.8166 39 1 -3.6666 6.1789 9.2605 40 1 -4.3664 5.1657 7.9749 41 1 -2.7757 4.7590 8.6625 42 1 -1.6305 7.5667 5.3707 43 1 -0.9983 6.4687 3.2604 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -89.868449 kcal Electronic energy + Delta-G solvation = -22580.858001 eV Core-core repulsion = 19203.805052 eV Total energy + Delta-G solvation = -3377.052949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.15379 -40.68936 -38.68665 -37.08268 -34.47480 -34.42538 -33.05638 -32.01329 -30.31239 -29.05338 -28.07036 -25.36148 -24.15082 -23.56503 -22.34356 -21.56083 -21.09562 -19.73657 -19.07401 -17.85608 -17.33173 -17.12745 -16.62405 -16.49863 -16.08911 -15.65936 -15.24386 -15.04577 -14.87201 -14.55797 -14.45562 -14.27347 -14.22769 -13.80541 -13.71679 -13.31385 -12.94317 -12.79512 -12.68718 -12.48781 -12.34610 -12.20263 -12.01090 -11.81133 -11.76916 -11.61393 -11.38007 -11.09185 -10.62954 -10.47704 -9.94241 -9.74046 -9.03325 -8.78606 -6.43890 0.40255 0.43962 1.45100 1.50017 1.69230 1.86914 2.40043 2.41337 2.55435 2.83394 3.01460 3.81129 3.85628 3.97780 4.12404 4.18527 4.33796 4.34559 4.37299 4.39883 4.42939 4.48024 4.54544 4.59033 4.70284 4.73675 4.77797 4.90128 4.96092 5.11803 5.14954 5.23212 5.25355 5.33629 5.34070 5.41375 5.56889 5.71106 5.72629 5.74168 5.84121 6.01767 6.46475 6.54250 6.93013 7.30195 7.53456 8.60169 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.034441 B = 0.002735 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.785214 B =10233.769442 C =10423.078196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.021 0.979 5 C -0.612 4.612 6 H 0.039 0.961 7 C -0.007 4.007 8 N -0.930 5.930 9 Si 1.072 2.928 10 H -0.284 1.284 11 H -0.244 1.244 12 H -0.275 1.275 13 N -0.707 5.707 14 C 0.499 3.501 15 O -0.583 6.583 16 C -0.123 4.123 17 C -0.051 4.051 18 C -0.122 4.122 19 C -0.081 4.081 20 C -0.208 4.208 21 C 0.108 3.892 22 O -0.338 6.338 23 C 0.019 3.981 24 C -0.163 4.163 25 C -0.082 4.082 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.257 0.743 32 H 0.402 0.598 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.139 0.861 38 H 0.147 0.853 39 H 0.117 0.883 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.137 0.863 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.126 7.659 18.087 26.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.145 3.855 4 H 0.038 0.962 5 C -0.650 4.650 6 H 0.057 0.943 7 C -0.208 4.208 8 N -0.565 5.565 9 Si 0.894 3.106 10 H -0.209 1.209 11 H -0.168 1.168 12 H -0.200 1.200 13 N -0.356 5.356 14 C 0.287 3.713 15 O -0.464 6.464 16 C -0.163 4.163 17 C -0.089 4.089 18 C -0.122 4.122 19 C -0.099 4.099 20 C -0.226 4.226 21 C 0.063 3.937 22 O -0.252 6.252 23 C -0.076 4.076 24 C -0.181 4.181 25 C -0.100 4.100 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.236 0.764 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.157 0.843 38 H 0.165 0.835 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.155 0.845 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.570 7.305 15.943 25.542 hybrid contribution 0.877 0.391 1.958 2.181 sum -17.693 7.695 17.901 26.320 Atomic orbital electron populations 1.21757 0.95391 1.00282 1.01517 1.22248 0.95492 0.98400 1.01370 1.18714 0.93229 0.89718 0.83813 0.96156 1.22315 0.91728 1.47872 1.03081 0.94322 1.26822 0.97725 0.92174 1.04039 1.70976 1.08081 1.43468 1.34001 0.83711 0.75144 0.78616 0.73082 1.20941 1.16831 1.20023 1.46160 1.15951 1.56505 1.17001 1.21294 0.81265 0.78137 0.90649 1.90640 1.51598 1.61026 1.43116 1.21651 0.98623 1.01742 0.94301 1.20131 0.94758 1.00003 0.93986 1.19830 1.01661 0.94327 0.96411 1.21093 0.96234 1.00437 0.92130 1.21445 1.06975 0.93935 1.00277 1.19248 0.95936 0.91942 0.86605 1.86038 1.74969 1.39916 1.24262 1.23321 0.97096 0.96717 0.90441 1.20621 1.03463 1.01054 0.92990 1.21072 0.97921 0.94278 0.96685 0.94233 0.92643 0.92966 0.92537 0.92808 0.93341 0.76391 0.87268 0.87809 0.91368 0.90937 0.84348 0.83515 0.86438 0.91782 0.91842 0.84534 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 8.53 71.98 0.61 -4.42 16 2 C -0.14 -5.89 5.28 30.59 0.16 -5.73 16 3 C 0.25 11.73 1.82 44.24 0.08 11.82 16 4 H 0.02 1.06 6.26 -2.39 -0.01 1.04 16 5 C -0.61 -33.30 9.01 25.60 0.23 -33.07 16 6 H 0.04 2.22 7.96 -2.91 -0.02 2.20 16 7 C -0.01 -0.41 5.32 84.66 0.45 0.04 16 8 N -0.93 -56.46 13.69 21.45 0.29 -56.17 16 9 Si 1.07 50.53 26.27 68.60 1.80 52.34 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.24 -10.44 5.67 99.48 0.56 -9.88 16 12 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 13 N -0.71 -27.23 5.03 -446.11 -2.24 -29.47 16 14 C 0.50 17.33 6.42 87.66 0.56 17.89 16 15 O -0.58 -24.05 13.12 -3.03 -0.04 -24.09 16 16 C -0.12 -2.96 5.68 29.85 0.17 -2.79 16 17 C -0.05 -1.18 4.63 29.85 0.14 -1.04 16 18 C -0.12 -2.50 5.13 -19.85 -0.10 -2.60 16 19 C -0.08 -1.49 9.69 22.25 0.22 -1.27 16 20 C -0.21 -3.59 9.04 22.37 0.20 -3.39 16 21 C 0.11 2.12 6.69 22.51 0.15 2.27 16 22 O -0.34 -6.18 10.50 -92.40 -0.97 -7.15 16 23 C 0.02 0.18 9.81 113.37 1.11 1.29 16 24 C -0.16 -3.23 9.99 22.37 0.22 -3.00 16 25 C -0.08 -1.62 9.69 22.25 0.22 -1.40 16 26 H 0.04 1.58 7.88 -2.39 -0.02 1.57 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.94 5.63 -2.38 -0.01 1.92 16 29 H 0.06 2.56 4.74 -2.38 -0.01 2.54 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.26 15.65 8.73 -92.71 -0.81 14.84 16 32 H 0.40 13.82 8.53 -92.71 -0.79 13.03 16 33 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.07 1.73 8.04 -2.39 -0.02 1.71 16 36 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.15 1.80 6.30 -2.91 -0.02 1.78 16 39 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 0.51 7.66 -2.39 -0.02 0.49 16 41 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 42 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 43 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -68.38 347.53 3.30 -65.08 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.04 Total: 24.85 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: 4.43 Total: -25.39 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.95 Total: -85.64 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -1.01 Total: -31.23 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 1.80 Total: 52.34 kcal Total: -68.38 3.30 -65.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.790 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds