Wall clock time and date at job start Tue Mar 31 2020 06:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46739 * 2 1 4 4 H 1.08995 * 109.47538 * 54.99869 * 3 2 1 5 5 C 1.50702 * 109.46727 * 174.99837 * 3 2 1 6 6 H 1.08008 * 119.99569 * 119.99610 * 5 3 2 7 7 C 1.37870 * 120.00451 * 299.99335 * 5 3 2 8 8 N 1.31514 * 120.00275 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99773 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47274 * 89.99526 * 9 7 5 11 11 H 1.48504 * 109.47115 * 209.99961 * 9 7 5 12 12 H 1.48511 * 109.46885 * 329.99537 * 9 7 5 13 13 N 1.46500 * 109.46853 * 294.99398 * 3 2 1 14 14 C 1.34773 * 119.99940 * 85.00411 * 13 3 2 15 15 O 1.21285 * 119.99707 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00280 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.47226 * 180.02562 * 16 14 13 18 18 O 1.42903 * 109.47155 * 179.97438 * 17 16 14 19 19 C 1.35900 * 117.00220 * 179.97438 * 18 17 16 20 20 C 1.38749 * 120.05349 * 0.02562 * 19 18 17 21 21 C 1.38119 * 119.94390 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.05600 * 359.74265 * 21 20 19 23 23 C 1.38242 * 120.10971 * 0.51459 * 22 21 20 24 24 C 1.50706 * 119.97255 * 179.76825 * 23 22 21 25 25 C 1.38164 * 120.05477 * 359.48677 * 23 22 21 26 26 H 1.09008 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47393 * 300.00315 * 1 2 3 28 28 H 1.09004 * 109.47257 * 60.00451 * 1 2 3 29 29 H 1.09000 * 109.47393 * 239.99685 * 2 1 3 30 30 H 1.09003 * 109.46772 * 119.99333 * 2 1 3 31 31 H 0.97008 * 119.99675 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00084 * 265.00446 * 13 3 2 33 33 H 1.09000 * 109.47289 * 59.99684 * 16 14 13 34 34 H 1.09008 * 109.47026 * 299.99604 * 16 14 13 35 35 H 1.09000 * 109.47253 * 59.99651 * 17 16 14 36 36 H 1.08997 * 109.47217 * 299.99566 * 17 16 14 37 37 H 1.08004 * 120.02880 * 359.95538 * 20 19 18 38 38 H 1.08003 * 119.97250 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.94810 * 180.27303 * 22 21 20 40 40 H 1.09001 * 109.46953 * 269.71760 * 24 23 22 41 41 H 1.09000 * 109.47318 * 29.71358 * 24 23 22 42 42 H 1.09000 * 109.47161 * 149.71989 * 24 23 22 43 43 H 1.08002 * 120.02382 * 180.23677 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8807 1.3363 9 14 3.0963 0.1092 2.5702 10 1 2.8754 -1.3269 2.2636 11 1 3.7936 0.2353 3.8753 12 1 1.7875 0.8078 2.6387 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3397 2.6318 -0.4346 16 6 0.0362 3.3374 -2.6550 17 6 -1.3826 3.8943 -2.5213 18 8 -1.7607 4.5332 -3.7424 19 6 -3.0018 5.0846 -3.7918 20 6 -3.8385 5.0128 -2.6873 21 6 -5.0992 5.5745 -2.7397 22 6 -5.5258 6.2127 -3.8899 23 6 -4.6960 6.2809 -4.9936 24 6 -5.1661 6.9727 -6.2473 25 6 -3.4340 5.7206 -4.9461 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 5.8769 0.4823 2.1131 32 1 2.2719 2.1230 -1.9978 33 1 0.0672 2.6127 -3.4686 34 1 0.7275 4.1528 -2.8682 35 1 -1.4133 4.6192 -1.7078 36 1 -2.0743 3.0793 -2.3080 37 1 -3.5043 4.5178 -1.7874 38 1 -5.7507 5.5193 -1.8801 39 1 -6.5102 6.6552 -3.9275 40 1 -5.6609 6.2506 -6.8968 41 1 -5.8670 7.7648 -5.9842 42 1 -4.3102 7.4027 -6.7676 43 1 -2.7847 5.7776 -5.8073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:44 Heat of formation + Delta-G solvation = -62.844485 kcal Electronic energy + Delta-G solvation = -22559.204666 eV Core-core repulsion = 19183.323564 eV Total energy + Delta-G solvation = -3375.881102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.32952 -39.33455 -37.78165 -35.45657 -32.77031 -32.55647 -32.17906 -31.30659 -29.77781 -27.59644 -27.18772 -24.42496 -22.72276 -22.62406 -21.22272 -20.45451 -19.63325 -18.13928 -17.08395 -16.40939 -16.32382 -16.09617 -15.73643 -15.51018 -14.87766 -14.46479 -14.20472 -13.93685 -13.62813 -13.44271 -13.34734 -13.06237 -12.85572 -12.40441 -12.31102 -11.99147 -11.88442 -11.74924 -11.71114 -11.58382 -11.11838 -10.94120 -10.89579 -10.75478 -10.65229 -9.96405 -9.62000 -9.28357 -9.20438 -8.97533 -8.78991 -8.32164 -8.13368 -6.24133 -4.26983 1.13862 1.29103 2.91602 3.13099 3.21053 3.33054 3.37458 3.58177 4.08218 4.28521 4.60054 4.62007 4.82871 4.89866 4.96434 5.04884 5.09394 5.14919 5.23968 5.30254 5.31744 5.50147 5.53003 5.63141 5.74745 5.78968 5.88413 5.92451 5.98682 6.13750 6.17791 6.27961 6.39021 6.61238 6.62232 6.65629 6.79733 6.90595 7.21179 7.25128 7.31059 7.46964 8.09279 8.47065 8.71583 8.85875 9.36387 10.87856 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038442 B = 0.002693 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.189965 B =10393.375831 C =10753.196489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.508 3.492 15 O -0.553 6.553 16 C -0.142 4.142 17 C 0.077 3.923 18 O -0.318 6.318 19 C 0.140 3.860 20 C -0.213 4.213 21 C -0.076 4.076 22 C -0.164 4.164 23 C -0.052 4.052 24 C -0.114 4.114 25 C -0.157 4.157 26 H 0.031 0.969 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.268 0.732 32 H 0.397 0.603 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.777 8.498 -12.676 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.345 5.345 14 C 0.293 3.707 15 O -0.433 6.433 16 C -0.182 4.182 17 C 0.002 3.998 18 O -0.232 6.232 19 C 0.094 3.906 20 C -0.232 4.232 21 C -0.094 4.094 22 C -0.182 4.182 23 C -0.052 4.052 24 C -0.170 4.170 25 C -0.176 4.176 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.230 0.770 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.973 8.402 -12.021 23.981 hybrid contribution -0.053 -0.634 0.676 0.928 sum -19.027 7.768 -11.346 23.475 Atomic orbital electron populations 1.21875 0.96962 0.99061 1.02186 1.22291 0.94340 0.99952 1.01180 1.19170 0.95680 0.88508 0.82773 0.93263 1.21047 0.88576 1.39906 1.07891 0.90155 1.24839 0.94881 0.95142 0.97681 1.69870 1.08687 1.44411 1.29834 0.86900 0.80941 0.79951 0.80907 1.20230 1.22144 1.18478 1.46143 1.14678 1.55569 1.18101 1.20057 0.82792 0.79232 0.88613 1.90683 1.51530 1.60297 1.40784 1.21510 0.96389 1.02210 0.98118 1.22471 0.95763 0.97061 0.84510 1.85977 1.29406 1.69439 1.38375 1.18978 0.84271 0.93124 0.94200 1.21390 0.96053 1.06616 0.99113 1.20948 0.95095 0.95602 0.97798 1.20916 1.00207 1.03582 0.93508 1.19685 0.93026 0.96684 0.95818 1.20800 1.01714 0.99878 0.94649 1.20282 0.96916 1.03118 0.97245 0.94946 0.92871 0.93013 0.92247 0.92736 0.92252 0.76982 0.88210 0.88064 0.91002 0.91082 0.85032 0.85808 0.86124 0.90967 0.91383 0.91348 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 8.51 37.16 0.32 -2.50 16 2 C -0.14 -3.02 5.11 -26.73 -0.14 -3.16 16 3 C 0.24 5.58 1.83 -69.08 -0.13 5.45 16 4 H 0.05 1.26 6.64 -51.93 -0.34 0.92 16 5 C -0.54 -14.23 9.31 -34.44 -0.32 -14.55 16 6 H 0.08 2.24 7.98 -52.48 -0.42 1.82 16 7 C 0.08 2.17 5.45 -17.82 -0.10 2.08 16 8 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 9 Si 0.88 21.53 24.41 -169.99 -4.15 17.38 16 10 H -0.28 -6.51 6.83 56.52 0.39 -6.13 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 N -0.70 -13.10 5.02 -54.93 -0.28 -13.37 16 14 C 0.51 8.82 6.40 -10.99 -0.07 8.75 16 15 O -0.55 -11.28 13.12 5.55 0.07 -11.20 16 16 C -0.14 -1.83 6.07 -27.88 -0.17 -2.00 16 17 C 0.08 1.01 4.03 37.16 0.15 1.16 16 18 O -0.32 -4.17 10.14 -19.43 -0.20 -4.37 16 19 C 0.14 1.75 6.69 -39.22 -0.26 1.49 16 20 C -0.21 -2.51 9.04 -39.44 -0.36 -2.86 16 21 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 22 C -0.16 -1.53 9.70 -39.56 -0.38 -1.91 16 23 C -0.05 -0.49 5.88 -104.64 -0.62 -1.11 16 24 C -0.11 -0.74 10.01 36.01 0.36 -0.38 16 25 C -0.16 -1.72 9.64 -39.44 -0.38 -2.10 16 26 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 27 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 28 H 0.05 0.98 5.64 -51.93 -0.29 0.68 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.05 1.25 3.21 -51.93 -0.17 1.09 16 31 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.40 6.54 8.54 -40.82 -0.35 6.19 16 33 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.10 1.17 8.14 -51.92 -0.42 0.74 16 35 H 0.07 0.97 7.62 -51.93 -0.40 0.57 16 36 H 0.07 0.94 7.62 -51.93 -0.40 0.55 16 37 H 0.13 1.52 6.30 -52.48 -0.33 1.19 16 38 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.36 8.08 -51.93 -0.42 -0.05 16 42 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 345.58 15.07 5.21 5.21 Total: -1.00 -30.93 345.58 -7.56 -38.49 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.51 Total: 6.07 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -2.49 Total: -12.81 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.50 Total: -38.77 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.12 Total: -15.57 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.15 Total: 17.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.93 -7.56 -38.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.352 kcal (2) G-P(sol) polarization free energy of solvation -30.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds