Wall clock time and date at job start Tue Mar 31 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46739 * 2 1 4 4 H 1.08995 * 109.47538 * 54.99869 * 3 2 1 5 5 C 1.50702 * 109.46727 * 174.99837 * 3 2 1 6 6 H 1.08008 * 119.99569 * 119.99610 * 5 3 2 7 7 C 1.37870 * 120.00451 * 299.99335 * 5 3 2 8 8 N 1.31514 * 120.00275 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99773 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47274 * 89.99526 * 9 7 5 11 11 H 1.48504 * 109.47115 * 209.99961 * 9 7 5 12 12 H 1.48511 * 109.46885 * 329.99537 * 9 7 5 13 13 N 1.46500 * 109.46853 * 294.99398 * 3 2 1 14 14 C 1.34773 * 119.99940 * 85.00411 * 13 3 2 15 15 O 1.21285 * 119.99707 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00280 * 180.02562 * 14 13 3 17 17 C 1.53004 * 109.47226 * 180.02562 * 16 14 13 18 18 O 1.42903 * 109.47155 * 179.97438 * 17 16 14 19 19 C 1.35900 * 117.00220 * 179.97438 * 18 17 16 20 20 C 1.38749 * 120.05349 * 0.02562 * 19 18 17 21 21 C 1.38119 * 119.94390 * 179.97438 * 20 19 18 22 22 C 1.38285 * 120.05600 * 359.74265 * 21 20 19 23 23 C 1.38242 * 120.10971 * 0.51459 * 22 21 20 24 24 C 1.50706 * 119.97255 * 179.76825 * 23 22 21 25 25 C 1.38164 * 120.05477 * 359.48677 * 23 22 21 26 26 H 1.09008 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47393 * 300.00315 * 1 2 3 28 28 H 1.09004 * 109.47257 * 60.00451 * 1 2 3 29 29 H 1.09000 * 109.47393 * 239.99685 * 2 1 3 30 30 H 1.09003 * 109.46772 * 119.99333 * 2 1 3 31 31 H 0.97008 * 119.99675 * 180.02562 * 8 7 5 32 32 H 0.97001 * 120.00084 * 265.00446 * 13 3 2 33 33 H 1.09000 * 109.47289 * 59.99684 * 16 14 13 34 34 H 1.09008 * 109.47026 * 299.99604 * 16 14 13 35 35 H 1.09000 * 109.47253 * 59.99651 * 17 16 14 36 36 H 1.08997 * 109.47217 * 299.99566 * 17 16 14 37 37 H 1.08004 * 120.02880 * 359.95538 * 20 19 18 38 38 H 1.08003 * 119.97250 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.94810 * 180.27303 * 22 21 20 40 40 H 1.09001 * 109.46953 * 269.71760 * 24 23 22 41 41 H 1.09000 * 109.47318 * 29.71358 * 24 23 22 42 42 H 1.09000 * 109.47161 * 149.71989 * 24 23 22 43 43 H 1.08002 * 120.02382 * 180.23677 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8889 -0.6524 7 6 4.1432 0.8786 1.2280 8 7 5.4539 0.8807 1.3363 9 14 3.0963 0.1092 2.5702 10 1 2.8754 -1.3269 2.2636 11 1 3.7936 0.2353 3.8753 12 1 1.7875 0.8078 2.6387 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3397 2.6318 -0.4346 16 6 0.0362 3.3374 -2.6550 17 6 -1.3826 3.8943 -2.5213 18 8 -1.7607 4.5332 -3.7424 19 6 -3.0018 5.0846 -3.7918 20 6 -3.8385 5.0128 -2.6873 21 6 -5.0992 5.5745 -2.7397 22 6 -5.5258 6.2127 -3.8899 23 6 -4.6960 6.2809 -4.9936 24 6 -5.1661 6.9727 -6.2473 25 6 -3.4340 5.7206 -4.9461 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 5.8769 0.4823 2.1131 32 1 2.2719 2.1230 -1.9978 33 1 0.0672 2.6127 -3.4686 34 1 0.7275 4.1528 -2.8682 35 1 -1.4133 4.6192 -1.7078 36 1 -2.0743 3.0793 -2.3080 37 1 -3.5043 4.5178 -1.7874 38 1 -5.7507 5.5193 -1.8801 39 1 -6.5102 6.6552 -3.9275 40 1 -5.6609 6.2506 -6.8968 41 1 -5.8670 7.7648 -5.9842 42 1 -4.3102 7.4027 -6.7676 43 1 -2.7847 5.7776 -5.8073 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:43 Heat of formation + Delta-G solvation = -82.296783 kcal Electronic energy + Delta-G solvation = -22560.048181 eV Core-core repulsion = 19183.323564 eV Total energy + Delta-G solvation = -3376.724617 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28688 -40.71325 -38.66781 -37.16508 -34.41796 -33.74058 -33.39207 -32.65406 -30.69895 -29.40719 -27.87384 -25.65504 -24.40432 -23.49871 -22.46578 -21.67913 -21.17932 -19.33711 -18.64789 -17.66639 -17.48703 -17.37873 -16.85876 -16.76396 -16.24779 -15.99751 -15.19624 -15.15230 -14.71129 -14.65033 -14.44666 -14.23158 -14.10940 -13.87585 -13.65751 -13.41301 -13.00219 -12.92806 -12.78064 -12.65213 -12.56994 -12.44354 -12.37622 -11.86328 -11.72573 -11.70318 -11.39344 -11.24422 -10.87722 -10.74848 -9.78438 -9.73945 -9.16208 -8.38876 -6.44357 0.35646 0.48228 1.26180 1.34457 1.43828 1.73586 1.86081 2.25022 2.75506 2.79291 2.97052 3.65657 3.90323 3.91719 3.93763 4.08632 4.17117 4.23703 4.32031 4.33061 4.41026 4.44190 4.52581 4.55195 4.73034 4.75567 4.84518 4.86776 4.88672 5.01048 5.04739 5.11913 5.22178 5.25637 5.37754 5.40506 5.50519 5.51688 5.65224 5.65319 5.86460 6.13037 6.40308 6.58207 6.86119 7.18526 7.43798 8.76245 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.038442 B = 0.002693 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.189965 B =10393.375831 C =10753.196489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 C 0.249 3.751 4 H 0.023 0.977 5 C -0.533 4.533 6 H 0.057 0.943 7 C 0.028 3.972 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.260 1.260 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.509 3.491 15 O -0.583 6.583 16 C -0.128 4.128 17 C 0.084 3.916 18 O -0.324 6.324 19 C 0.114 3.886 20 C -0.231 4.231 21 C -0.083 4.083 22 C -0.164 4.164 23 C -0.054 4.054 24 C -0.113 4.113 25 C -0.169 4.169 26 H 0.057 0.943 27 H 0.036 0.964 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.043 0.957 31 H 0.270 0.730 32 H 0.409 0.591 33 H 0.125 0.875 34 H 0.120 0.880 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.096 8.718 -14.077 26.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.176 4.176 3 C 0.144 3.856 4 H 0.041 0.959 5 C -0.571 4.571 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.186 1.186 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.347 5.347 14 C 0.296 3.704 15 O -0.465 6.465 16 C -0.168 4.168 17 C 0.008 3.992 18 O -0.238 6.238 19 C 0.069 3.931 20 C -0.249 4.249 21 C -0.101 4.101 22 C -0.182 4.182 23 C -0.054 4.054 24 C -0.169 4.169 25 C -0.187 4.187 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -21.307 8.631 -13.459 26.640 hybrid contribution 0.615 -0.594 1.029 1.337 sum -20.693 8.038 -12.431 25.442 Atomic orbital electron populations 1.21766 0.95146 1.00561 1.01644 1.22212 0.95893 0.98476 1.01069 1.18791 0.93144 0.89706 0.83957 0.95914 1.21307 0.90427 1.38485 1.06918 0.92466 1.25557 0.95730 0.95952 0.99895 1.69980 1.10279 1.46158 1.30862 0.86034 0.79308 0.79947 0.78315 1.18585 1.22203 1.18431 1.45973 1.15752 1.55906 1.17109 1.20714 0.81645 0.78297 0.89719 1.90674 1.52243 1.61183 1.42354 1.21401 0.96528 1.02947 0.95910 1.22307 0.95695 0.96650 0.84513 1.85933 1.30097 1.69809 1.37990 1.19268 0.84260 0.94393 0.95213 1.21475 0.97005 1.07565 0.98899 1.21248 0.94705 0.95206 0.98970 1.21291 1.01242 1.02753 0.92957 1.20096 0.92355 0.95893 0.97077 1.20868 1.02355 1.00290 0.93376 1.20537 0.97869 1.03236 0.97068 0.92370 0.94467 0.92521 0.91210 0.93925 0.92107 0.75598 0.85664 0.86231 0.92077 0.91630 0.85726 0.83978 0.83533 0.89876 0.89905 0.90745 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 8.51 71.98 0.61 -4.39 16 2 C -0.14 -5.81 5.11 30.59 0.16 -5.65 16 3 C 0.25 11.43 1.83 44.25 0.08 11.51 16 4 H 0.02 1.18 6.64 -2.39 -0.02 1.17 16 5 C -0.53 -28.64 9.31 25.60 0.24 -28.40 16 6 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 7 C 0.03 1.59 5.45 84.65 0.46 2.05 16 8 N -0.93 -55.82 13.96 21.44 0.30 -55.52 16 9 Si 0.94 44.55 24.41 68.60 1.67 46.23 16 10 H -0.26 -11.65 6.83 99.48 0.68 -10.97 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.26 -12.23 6.53 99.48 0.65 -11.58 16 13 N -0.70 -25.71 5.02 -446.10 -2.24 -27.95 16 14 C 0.51 17.17 6.40 87.66 0.56 17.73 16 15 O -0.58 -23.58 13.12 -3.04 -0.04 -23.62 16 16 C -0.13 -3.08 6.07 29.85 0.18 -2.90 16 17 C 0.08 2.14 4.03 71.98 0.29 2.43 16 18 O -0.32 -8.28 10.14 -92.42 -0.94 -9.22 16 19 C 0.11 2.79 6.69 22.50 0.15 2.94 16 20 C -0.23 -5.38 9.04 22.36 0.20 -5.18 16 21 C -0.08 -1.58 10.04 22.25 0.22 -1.36 16 22 C -0.16 -2.70 9.70 22.28 0.22 -2.48 16 23 C -0.05 -0.91 5.88 -19.88 -0.12 -1.03 16 24 C -0.11 -1.14 10.01 71.24 0.71 -0.43 16 25 C -0.17 -3.50 9.64 22.36 0.22 -3.29 16 26 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.04 1.49 7.85 -2.39 -0.02 1.47 16 28 H 0.06 2.04 5.64 -2.39 -0.01 2.03 16 29 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 30 H 0.04 1.89 3.21 -2.39 -0.01 1.89 16 31 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 32 H 0.41 13.06 8.54 -92.71 -0.79 12.27 16 33 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 35 H 0.06 1.67 7.62 -2.39 -0.02 1.65 16 36 H 0.07 1.72 7.62 -2.39 -0.02 1.71 16 37 H 0.12 2.96 6.30 -2.91 -0.02 2.94 16 38 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 39 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.61 8.08 -2.39 -0.02 0.59 16 42 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 43 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -67.15 345.58 3.08 -64.07 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.13 Total: 24.44 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 4.19 Total: -18.44 kcal Atomic # 7 Polarization: -81.53 SS G_CDS: -1.94 Total: -83.47 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.98 Total: -32.83 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.67 Total: 46.23 kcal Total: -67.15 3.08 -64.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.225 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds