Wall clock time and date at job start Tue Mar 31 2020 06:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47510 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47200 * 120.00398 * 9 7 5 12 12 H 1.48505 * 109.46878 * 239.99713 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 O 1.42902 * 109.47178 * 179.97438 * 17 16 14 19 19 C 1.35899 * 116.99732 * 180.02562 * 18 17 16 20 20 C 1.38759 * 120.05791 * 359.72464 * 19 18 17 21 21 C 1.38123 * 119.94276 * 179.70118 * 20 19 18 22 22 C 1.38283 * 120.05486 * 0.59929 * 21 20 19 23 23 C 1.38251 * 120.11355 * 359.67459 * 22 21 20 24 24 C 1.50698 * 119.97306 * 180.02562 * 23 22 21 25 25 C 1.38167 * 120.05277 * 0.02810 * 23 22 21 26 26 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 28 28 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 29 29 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 30 30 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 31 31 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 33 33 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 34 34 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 35 35 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 36 36 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 37 37 H 1.07995 * 120.02484 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.97253 * 180.29746 * 21 20 19 39 39 H 1.08006 * 119.94672 * 179.70372 * 22 21 20 40 40 H 1.09004 * 109.46921 * 270.02185 * 24 23 22 41 41 H 1.09001 * 109.47252 * 30.02111 * 24 23 22 42 42 H 1.08996 * 109.47166 * 150.02629 * 24 23 22 43 43 H 1.07999 * 120.02415 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5987 1.5455 -0.1937 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6158 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -1.3871 3.8842 2.5250 18 8 -1.7676 4.5174 3.7482 19 6 -3.0110 5.0635 3.7995 20 6 -3.8458 4.9963 2.6931 21 6 -5.1113 5.5466 2.7498 22 6 -5.5422 6.1750 3.9038 23 6 -4.7103 6.2483 5.0057 24 6 -5.1832 6.9334 6.2618 25 6 -3.4457 5.6940 4.9560 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.8292 -0.0604 -2.9502 32 1 2.2718 2.1233 1.9978 33 1 0.0680 2.6060 3.4684 34 1 0.7223 4.1501 2.8717 35 1 -1.4211 4.6108 1.7132 36 1 -2.0755 3.0668 2.3099 37 1 -3.5078 4.5102 1.7899 38 1 -5.7632 5.4904 1.8906 39 1 -6.5304 6.6090 3.9447 40 1 -4.9202 7.9904 6.2203 41 1 -6.2652 6.8313 6.3461 42 1 -4.7064 6.4741 7.1277 43 1 -2.7964 5.7511 5.8171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054177948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:47 Heat of formation + Delta-G solvation = -71.189227 kcal Electronic energy + Delta-G solvation = -22467.506522 eV Core-core repulsion = 19091.263565 eV Total energy + Delta-G solvation = -3376.242957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26940 -39.12861 -37.71294 -35.16508 -32.71898 -32.50119 -32.03452 -30.83899 -29.68565 -27.24472 -26.98448 -24.33847 -22.88524 -22.64661 -21.05387 -20.11445 -19.36681 -18.05550 -16.89543 -16.33095 -16.26534 -16.01676 -15.45293 -15.22770 -14.72300 -14.39778 -14.19173 -13.89787 -13.53126 -13.35599 -13.13358 -12.85683 -12.70080 -12.36018 -12.05883 -11.71815 -11.69718 -11.64716 -11.39197 -11.28401 -10.98769 -10.87091 -10.84450 -10.68213 -10.33819 -10.20881 -9.66568 -9.11750 -9.05302 -8.93473 -8.53405 -8.27463 -7.87898 -6.15427 -4.24860 1.17988 1.33342 2.99460 3.21616 3.29582 3.31140 3.33129 3.62352 4.18119 4.39782 4.64344 4.67068 4.90680 4.94448 5.04843 5.09074 5.16175 5.19613 5.29802 5.33977 5.39665 5.55203 5.60503 5.71901 5.83275 5.85603 5.92505 6.22355 6.32436 6.36052 6.42016 6.42842 6.62435 6.66652 7.00421 7.15650 7.32666 7.36253 7.40211 7.58608 7.69348 7.86461 8.14779 8.60765 8.73756 9.06592 9.42558 10.89947 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.002562 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.801842 B =10927.221890 C =11303.187965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.705 5.705 14 C 0.506 3.494 15 O -0.552 6.552 16 C -0.143 4.143 17 C 0.077 3.923 18 O -0.319 6.319 19 C 0.140 3.860 20 C -0.213 4.213 21 C -0.076 4.076 22 C -0.164 4.164 23 C -0.053 4.053 24 C -0.113 4.113 25 C -0.157 4.157 26 H 0.023 0.977 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.390 0.610 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.603 9.439 13.888 21.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.353 5.353 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.183 4.183 17 C 0.002 3.998 18 O -0.233 6.233 19 C 0.094 3.906 20 C -0.231 4.231 21 C -0.094 4.094 22 C -0.183 4.183 23 C -0.053 4.053 24 C -0.170 4.170 25 C -0.176 4.176 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.951 9.287 13.154 21.305 hybrid contribution 1.285 -0.163 -0.057 1.296 sum -12.666 9.124 13.096 20.377 Atomic orbital electron populations 1.21836 0.98367 0.98066 1.01157 1.21939 0.92601 0.99795 1.02341 1.18816 0.94279 0.89201 0.80936 0.93257 1.21271 0.90686 1.38985 1.06316 0.92002 1.24896 0.98662 0.94792 0.95389 1.69905 1.35059 1.37643 1.09325 0.86395 0.84809 0.77784 0.78126 1.19738 1.20863 1.20883 1.46476 1.14477 1.55631 1.18685 1.19995 0.83056 0.79458 0.88450 1.90685 1.51463 1.60215 1.40783 1.21536 0.96185 1.02112 0.98455 1.22482 0.95847 0.97134 0.84321 1.85976 1.29135 1.69775 1.38370 1.18989 0.84290 0.93124 0.94151 1.21405 0.95992 1.06676 0.99063 1.20949 0.95040 0.95673 0.97754 1.20912 1.00259 1.03573 0.93516 1.19679 0.93030 0.96710 0.95847 1.20794 1.01497 1.00226 0.94490 1.20274 0.96805 1.03228 0.97306 0.95829 0.94376 0.93140 0.88247 0.95002 0.92596 0.77773 0.88447 0.88371 0.91021 0.91069 0.84980 0.85797 0.86148 0.90985 0.91403 0.91386 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.68 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.46 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.85 8.73 -34.44 -0.30 -14.16 16 6 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.43 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.71 -14.01 5.02 -54.93 -0.28 -14.28 16 14 C 0.51 9.42 6.40 -10.98 -0.07 9.35 16 15 O -0.55 -12.11 13.12 5.55 0.07 -12.04 16 16 C -0.14 -1.97 6.07 -27.88 -0.17 -2.14 16 17 C 0.08 1.08 4.03 37.16 0.15 1.23 16 18 O -0.32 -4.37 10.14 -19.42 -0.20 -4.57 16 19 C 0.14 1.82 6.69 -39.22 -0.26 1.56 16 20 C -0.21 -2.62 9.04 -39.43 -0.36 -2.98 16 21 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 22 C -0.16 -1.60 9.70 -39.56 -0.38 -1.98 16 23 C -0.05 -0.52 5.88 -104.64 -0.62 -1.13 16 24 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 25 C -0.16 -1.79 9.64 -39.43 -0.38 -2.17 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 28 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 29 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.39 6.69 8.54 -40.82 -0.35 6.34 16 33 H 0.10 1.18 8.14 -51.92 -0.42 0.76 16 34 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.03 7.61 -51.93 -0.40 0.63 16 36 H 0.07 1.02 7.63 -51.93 -0.40 0.62 16 37 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 43 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 352.34 15.07 5.31 5.31 Total: -1.00 -29.79 352.34 -8.63 -38.42 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.64 Total: 7.41 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -2.50 Total: -11.80 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 0.35 Total: -38.09 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.12 Total: -16.61 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.79 -8.63 -38.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.773 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds