Wall clock time and date at job start Tue Mar 31 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46769 * 2 1 4 4 H 1.09007 * 109.47145 * 304.99277 * 3 2 1 5 5 C 1.50707 * 109.47112 * 185.00130 * 3 2 1 6 6 H 1.07998 * 120.00049 * 239.99769 * 5 3 2 7 7 C 1.37881 * 119.99925 * 59.99507 * 5 3 2 8 8 N 1.31517 * 119.99779 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99556 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47510 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47200 * 120.00398 * 9 7 5 12 12 H 1.48505 * 109.46878 * 239.99713 * 9 7 5 13 13 N 1.46497 * 109.47313 * 65.00173 * 3 2 1 14 14 C 1.34777 * 119.99525 * 274.99614 * 13 3 2 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 3 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 O 1.42902 * 109.47178 * 179.97438 * 17 16 14 19 19 C 1.35899 * 116.99732 * 180.02562 * 18 17 16 20 20 C 1.38759 * 120.05791 * 359.72464 * 19 18 17 21 21 C 1.38123 * 119.94276 * 179.70118 * 20 19 18 22 22 C 1.38283 * 120.05486 * 0.59929 * 21 20 19 23 23 C 1.38251 * 120.11355 * 359.67459 * 22 21 20 24 24 C 1.50698 * 119.97306 * 180.02562 * 23 22 21 25 25 C 1.38167 * 120.05277 * 0.02810 * 23 22 21 26 26 H 1.09001 * 109.46770 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47199 * 299.99670 * 1 2 3 28 28 H 1.08992 * 109.47177 * 60.00686 * 1 2 3 29 29 H 1.09005 * 109.47412 * 240.00234 * 2 1 3 30 30 H 1.09001 * 109.47746 * 119.99475 * 2 1 3 31 31 H 0.97001 * 119.99544 * 179.97438 * 8 7 5 32 32 H 0.97000 * 120.00580 * 95.00360 * 13 3 2 33 33 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 34 34 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 35 35 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 36 36 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 37 37 H 1.07995 * 120.02484 * 359.97438 * 20 19 18 38 38 H 1.07997 * 119.97253 * 180.29746 * 21 20 19 39 39 H 1.08006 * 119.94672 * 179.70372 * 22 21 20 40 40 H 1.09004 * 109.46921 * 270.02185 * 24 23 22 41 41 H 1.09001 * 109.47252 * 30.02111 * 24 23 22 42 42 H 1.08996 * 109.47166 * 150.02629 * 24 23 22 43 43 H 1.07999 * 120.02415 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8891 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3374 -2.1733 9 14 6.0049 0.8802 -1.3811 10 1 6.5987 1.5455 -0.1937 11 1 6.4962 -0.5188 -1.4626 12 1 6.3999 1.6158 -2.6092 13 7 1.6523 2.0975 1.2518 14 6 0.4350 2.6644 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0340 3.3328 2.6566 17 6 -1.3871 3.8842 2.5250 18 8 -1.7676 4.5174 3.7482 19 6 -3.0110 5.0635 3.7995 20 6 -3.8458 4.9963 2.6931 21 6 -5.1113 5.5466 2.7498 22 6 -5.5422 6.1750 3.9038 23 6 -4.7103 6.2483 5.0057 24 6 -5.1832 6.9334 6.2618 25 6 -3.4457 5.6940 4.9560 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 3.8292 -0.0604 -2.9502 32 1 2.2718 2.1233 1.9978 33 1 0.0680 2.6060 3.4684 34 1 0.7223 4.1501 2.8717 35 1 -1.4211 4.6108 1.7132 36 1 -2.0755 3.0668 2.3099 37 1 -3.5078 4.5102 1.7899 38 1 -5.7632 5.4904 1.8906 39 1 -6.5304 6.6090 3.9447 40 1 -4.9202 7.9904 6.2203 41 1 -6.2652 6.8313 6.3461 42 1 -4.7064 6.4741 7.1277 43 1 -2.7964 5.7511 5.8171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054177948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:46 Heat of formation + Delta-G solvation = -88.346585 kcal Electronic energy + Delta-G solvation = -22468.250521 eV Core-core repulsion = 19091.263565 eV Total energy + Delta-G solvation = -3376.986956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26034 -40.62032 -38.65576 -36.98371 -34.32657 -33.56033 -33.33884 -32.43696 -30.67958 -28.95188 -27.86349 -25.71926 -24.61260 -23.49577 -22.20249 -21.58948 -21.06593 -19.22156 -18.49198 -17.55847 -17.41606 -17.12938 -16.82521 -16.74532 -16.18904 -15.96192 -15.17747 -14.82786 -14.66534 -14.55000 -14.40112 -14.13027 -14.10442 -13.59478 -13.30435 -13.18080 -12.97418 -12.87559 -12.71827 -12.64462 -12.54805 -12.43484 -12.15352 -12.05382 -11.72700 -11.70900 -11.58405 -11.04472 -10.73167 -10.52413 -9.74181 -9.63988 -9.16379 -8.16699 -6.33644 0.35454 0.48075 1.43576 1.45179 1.56542 1.81370 1.88893 2.39572 2.79111 2.88142 3.13192 3.67139 3.90229 3.93343 3.93729 4.13875 4.16950 4.33130 4.42035 4.48949 4.49911 4.55110 4.56952 4.73054 4.74185 4.77982 4.87118 4.88831 5.04812 5.06682 5.25784 5.26030 5.37859 5.43411 5.50646 5.56171 5.62368 5.65092 5.79567 5.86426 5.92044 6.17085 6.39755 6.75010 6.96519 7.33386 7.56447 8.88790 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.037534 B = 0.002562 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.801842 B =10927.221890 C =11303.187965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.277 3.723 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.260 1.260 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.703 5.703 14 C 0.504 3.496 15 O -0.589 6.589 16 C -0.127 4.127 17 C 0.085 3.915 18 O -0.323 6.323 19 C 0.113 3.887 20 C -0.232 4.232 21 C -0.083 4.083 22 C -0.164 4.164 23 C -0.054 4.054 24 C -0.112 4.112 25 C -0.167 4.167 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.025 0.975 29 H 0.071 0.929 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.406 0.594 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.852 10.352 16.327 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.161 4.161 3 C 0.173 3.827 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.352 5.352 14 C 0.291 3.709 15 O -0.470 6.470 16 C -0.166 4.166 17 C 0.009 3.991 18 O -0.237 6.237 19 C 0.068 3.932 20 C -0.251 4.251 21 C -0.101 4.101 22 C -0.182 4.182 23 C -0.054 4.054 24 C -0.168 4.168 25 C -0.186 4.186 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.241 0.759 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.093 0.907 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.203 10.217 15.640 23.467 hybrid contribution 1.242 -0.381 -0.801 1.526 sum -12.961 9.836 14.838 22.020 Atomic orbital electron populations 1.21678 0.96949 0.99142 1.00301 1.21789 0.93780 0.99180 1.01325 1.18385 0.93637 0.89204 0.81438 0.98300 1.21623 0.91480 1.38731 1.06636 0.90965 1.25771 1.03249 0.94461 0.95106 1.70056 1.36952 1.38469 1.09873 0.85332 0.79247 0.77781 0.78179 1.18428 1.20520 1.21125 1.46229 1.15515 1.55765 1.17696 1.20758 0.81969 0.78567 0.89643 1.90677 1.52388 1.61328 1.42653 1.21404 0.96372 1.02969 0.95896 1.22283 0.95749 0.96598 0.84435 1.85929 1.29880 1.70138 1.37767 1.19290 0.84238 0.94481 0.95205 1.21475 0.97056 1.07734 0.98802 1.21242 0.94582 0.95321 0.98987 1.21294 1.01355 1.02630 0.92907 1.20106 0.92313 0.95834 0.97134 1.20865 1.02491 1.00457 0.93025 1.20538 0.97768 1.03229 0.97058 0.93678 0.93600 0.95558 0.91097 0.93971 0.92643 0.75903 0.85842 0.86087 0.92202 0.92005 0.85987 0.84041 0.83458 0.89891 0.89863 0.90672 0.84384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.51 71.98 0.61 -4.86 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 13.91 2.24 44.25 0.10 14.01 16 4 H 0.00 -0.05 7.58 -2.38 -0.02 -0.07 16 5 C -0.55 -28.45 8.73 25.60 0.22 -28.23 16 6 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.01 0.75 5.29 84.66 0.45 1.20 16 8 N -0.92 -52.02 11.29 21.45 0.24 -51.78 16 9 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 13 N -0.70 -27.72 5.02 -446.08 -2.24 -29.96 16 14 C 0.50 18.68 6.40 87.66 0.56 19.24 16 15 O -0.59 -26.60 13.12 -3.04 -0.04 -26.64 16 16 C -0.13 -3.31 6.07 29.85 0.18 -3.13 16 17 C 0.08 2.36 4.03 71.98 0.29 2.65 16 18 O -0.32 -8.72 10.14 -92.41 -0.94 -9.65 16 19 C 0.11 2.92 6.69 22.51 0.15 3.07 16 20 C -0.23 -5.78 9.04 22.37 0.20 -5.58 16 21 C -0.08 -1.69 10.04 22.25 0.22 -1.46 16 22 C -0.16 -2.83 9.70 22.28 0.22 -2.61 16 23 C -0.05 -0.94 5.88 -19.88 -0.12 -1.06 16 24 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 25 C -0.17 -3.61 9.64 22.37 0.22 -3.39 16 26 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.93 5.64 -2.39 -0.01 1.92 16 28 H 0.03 1.25 7.85 -2.39 -0.02 1.23 16 29 H 0.07 3.88 5.95 -2.38 -0.01 3.87 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.41 13.33 8.54 -92.71 -0.79 12.54 16 33 H 0.12 2.66 8.14 -2.38 -0.02 2.64 16 34 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.06 1.78 7.61 -2.39 -0.02 1.76 16 36 H 0.06 1.81 7.63 -2.39 -0.02 1.79 16 37 H 0.12 3.17 6.30 -2.91 -0.02 3.15 16 38 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 39 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 40 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.08 0.64 8.09 -2.39 -0.02 0.62 16 42 H 0.07 0.70 8.08 -2.39 -0.02 0.68 16 43 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -66.12 352.34 3.45 -62.67 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.21 Total: 27.94 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 4.19 Total: -16.38 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -2.00 Total: -81.73 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.98 Total: -36.29 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -66.12 3.45 -62.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054177948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.677 kcal (2) G-P(sol) polarization free energy of solvation -66.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds