Wall clock time and date at job start Tue Mar 31 2020 06:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47030 * 2 1 4 4 H 1.09000 * 109.47085 * 306.15669 * 3 2 1 5 5 C 1.50707 * 109.47027 * 186.16590 * 3 2 1 6 6 H 1.07997 * 119.99964 * 244.74433 * 5 3 2 7 7 C 1.37882 * 120.00109 * 64.74258 * 5 3 2 8 8 N 1.31512 * 120.00074 * 195.17050 * 7 5 3 9 9 Si 1.86798 * 119.99884 * 15.16976 * 7 5 3 10 10 H 1.48504 * 109.47312 * 92.26747 * 9 7 5 11 11 H 1.48496 * 109.47265 * 212.27089 * 9 7 5 12 12 H 1.48504 * 109.47338 * 332.26959 * 9 7 5 13 13 N 1.46890 * 109.47667 * 66.16595 * 3 2 1 14 14 C 1.46900 * 111.00371 * 202.74034 * 13 3 2 15 15 H 1.09000 * 109.46608 * 326.84938 * 14 13 3 16 16 C 1.52993 * 109.47295 * 86.84892 * 14 13 3 17 17 C 1.50701 * 109.47203 * 206.85250 * 14 13 3 18 18 C 1.38254 * 119.94298 * 319.99659 * 17 14 13 19 19 C 1.38191 * 120.11658 * 180.02562 * 18 17 14 20 20 C 1.38709 * 120.06587 * 0.02562 * 19 18 17 21 21 C 1.38980 * 119.81488 * 359.87636 * 20 19 18 22 22 C 1.38192 * 119.94343 * 139.71814 * 17 14 13 23 23 O 1.36110 * 120.77686 * 180.36281 * 21 20 19 24 24 C 1.43170 * 116.69552 * 342.52752 * 23 21 20 25 25 C 1.53475 * 108.23876 * 46.30264 * 24 23 21 26 26 O 1.36104 * 119.40604 * 179.64702 * 20 19 18 27 27 H 1.08995 * 109.47085 * 173.94370 * 1 2 3 28 28 H 1.08993 * 109.46924 * 53.94094 * 1 2 3 29 29 H 1.09005 * 109.47129 * 293.94161 * 1 2 3 30 30 H 1.09002 * 109.47120 * 119.99540 * 2 1 3 31 31 H 1.08999 * 109.47107 * 239.99204 * 2 1 3 32 32 H 0.97000 * 120.00080 * 180.02562 * 8 7 5 33 33 H 1.00909 * 110.99618 * 326.68858 * 13 3 2 34 34 H 1.09001 * 109.47365 * 64.74885 * 16 14 13 35 35 H 1.09008 * 109.47235 * 184.75030 * 16 14 13 36 36 H 1.08999 * 109.47355 * 304.74372 * 16 14 13 37 37 H 1.07995 * 119.94088 * 0.04116 * 18 17 14 38 38 H 1.08002 * 119.97188 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.97063 * 359.97438 * 22 17 14 40 40 H 1.09001 * 109.70994 * 165.99103 * 24 23 21 41 41 H 1.09000 * 109.71294 * 286.61947 * 24 23 21 42 42 H 1.09005 * 109.70124 * 59.98811 * 25 24 23 43 43 H 1.08991 * 109.70928 * 180.60755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5894 1.9871 -0.8297 5 6 3.5393 1.4452 -0.1526 6 1 4.1629 1.8147 0.6480 7 6 4.1149 0.9760 -1.3143 8 7 5.3996 0.6966 -1.3454 9 14 3.0699 0.7371 -2.8441 10 1 3.1137 1.9698 -3.6710 11 1 3.5983 -0.4059 -3.6311 12 1 1.6667 0.4576 -2.4464 13 7 1.6756 2.0908 1.2667 14 6 1.6460 3.5522 1.1208 15 1 2.4034 3.8608 0.4003 16 6 0.2649 3.9875 0.6270 17 6 1.9288 4.1960 2.4538 18 6 1.3854 3.6617 3.6073 19 6 1.6419 4.2494 4.8314 20 6 2.4452 5.3778 4.9058 21 6 2.9931 5.9136 3.7464 22 6 2.7354 5.3160 2.5216 23 8 3.7899 7.0159 3.7975 24 6 3.7237 7.8026 4.9919 25 6 3.7907 6.8538 6.1964 26 8 2.6832 5.9499 6.1176 27 1 -0.3633 -1.0219 -0.1084 28 1 -0.3633 0.6049 -0.8307 29 1 -0.3634 0.4171 0.9393 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 5.8046 0.3668 -2.1628 33 1 0.7923 1.7436 1.6096 34 1 -0.4824 3.7544 1.3855 35 1 0.2683 5.0611 0.4381 36 1 0.0248 3.4574 -0.2946 37 1 0.7596 2.7833 3.5517 38 1 1.2166 3.8298 5.7311 39 1 3.1627 5.7285 1.6195 40 1 4.5644 8.4957 5.0226 41 1 2.7867 8.3591 5.0140 42 1 4.7251 6.2932 6.1710 43 1 3.7311 7.4284 7.1206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:40 Heat of formation + Delta-G solvation = -47.437748 kcal Electronic energy + Delta-G solvation = -23652.951083 eV Core-core repulsion = 20277.738067 eV Total energy + Delta-G solvation = -3375.213016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10611 -38.41949 -37.14449 -36.46124 -33.50038 -31.92348 -30.84881 -30.32511 -28.82394 -27.75857 -26.58736 -24.84226 -22.98720 -22.43740 -21.86018 -19.92189 -19.61170 -18.45024 -17.13287 -16.92059 -16.71161 -15.32239 -15.28490 -14.95646 -14.83400 -14.33861 -14.20925 -13.76893 -13.72347 -13.64645 -13.14869 -12.94792 -12.64914 -12.50194 -12.44236 -11.95725 -11.77392 -11.70867 -11.25768 -11.10434 -10.88190 -10.77580 -10.65698 -10.47652 -10.24645 -10.14001 -9.99657 -9.48730 -9.15549 -8.45005 -8.34779 -7.75765 -7.34324 -6.03042 -3.95352 1.56359 1.59249 3.08930 3.27098 3.28785 3.38626 3.40593 3.96262 4.19608 4.45512 4.69980 4.77889 4.79363 4.97701 5.14145 5.23023 5.29014 5.34001 5.49864 5.54432 5.62036 5.74772 5.78134 5.82717 5.89030 6.00086 6.05042 6.13190 6.31373 6.38629 6.41735 6.49009 6.54072 6.69589 6.79425 6.83066 6.95042 7.00435 7.09047 7.26617 7.56524 7.80510 8.01079 8.27745 8.79530 9.15204 9.63607 11.10412 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.004132 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.917055 B = 6774.208978 C = 7376.484355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C 0.195 3.805 4 H -0.003 1.003 5 C -0.501 4.501 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.857 3.143 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.254 1.254 13 N -0.666 5.666 14 C 0.126 3.874 15 H 0.097 0.903 16 C -0.175 4.175 17 C -0.042 4.042 18 C -0.092 4.092 19 C -0.116 4.116 20 C 0.034 3.966 21 C 0.047 3.953 22 C -0.108 4.108 23 O -0.308 6.308 24 C 0.022 3.978 25 C 0.021 3.979 26 O -0.312 6.312 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.262 0.738 33 H 0.319 0.681 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.117 0.883 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.772 11.333 11.562 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.166 4.166 3 C 0.087 3.913 4 H 0.014 0.986 5 C -0.539 4.539 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.532 5.532 9 Si 0.684 3.316 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.178 1.178 13 N -0.296 5.296 14 C 0.015 3.985 15 H 0.115 0.885 16 C -0.234 4.234 17 C -0.043 4.043 18 C -0.111 4.111 19 C -0.135 4.135 20 C -0.010 4.010 21 C 0.003 3.997 22 C -0.127 4.127 23 O -0.223 6.223 24 C -0.054 4.054 25 C -0.055 4.055 26 O -0.227 6.227 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.135 0.865 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.939 11.270 11.713 18.089 hybrid contribution -0.986 0.113 -1.310 1.644 sum -8.925 11.383 10.403 17.817 Atomic orbital electron populations 1.21921 0.98643 1.00347 1.00387 1.22087 0.92373 1.00077 1.02033 1.19541 0.96678 0.89499 0.85617 0.98589 1.20998 0.89239 1.41460 1.02217 0.90242 1.24910 0.94670 0.94816 0.98555 1.69978 1.11493 1.44183 1.27520 0.87304 0.82244 0.77811 0.84233 1.20881 1.21497 1.17806 1.60572 1.34996 1.02015 1.32042 1.20375 0.96339 0.89317 0.92478 0.88519 1.22499 0.97989 1.01631 1.01248 1.19718 0.95185 0.93391 0.96007 1.20688 1.00485 0.99263 0.90637 1.20362 1.00649 0.93632 0.98835 1.18810 1.02666 0.96241 0.83295 1.18794 0.97597 0.89790 0.93554 1.20306 0.99948 0.97249 0.95182 1.86319 1.60945 1.36185 1.38880 1.23552 1.04228 0.93292 0.84346 1.23559 0.89835 0.92093 0.99993 1.86259 1.48639 1.58975 1.28836 0.93835 0.93787 0.93442 0.91800 0.92197 0.92854 0.86283 0.92829 0.92555 0.92324 0.85192 0.85335 0.84949 0.86473 0.90876 0.90637 0.86547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 9.63 37.16 0.36 -2.22 16 2 C -0.13 -2.65 4.78 -26.73 -0.13 -2.78 16 3 C 0.20 4.38 1.39 -68.87 -0.10 4.29 16 4 H 0.00 -0.08 5.89 -51.93 -0.31 -0.38 16 5 C -0.50 -13.85 8.82 -34.44 -0.30 -14.15 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 2.05 5.33 -17.82 -0.09 1.96 16 8 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.86 20.87 25.77 -169.99 -4.38 16.49 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.25 -5.74 5.50 56.52 0.31 -5.43 16 13 N -0.67 -12.91 5.46 -102.18 -0.56 -13.46 16 14 C 0.13 2.22 2.59 -68.87 -0.18 2.04 16 15 H 0.10 1.95 7.39 -51.93 -0.38 1.57 16 16 C -0.17 -2.56 9.13 37.15 0.34 -2.22 16 17 C -0.04 -0.70 4.95 -104.63 -0.52 -1.22 16 18 C -0.09 -1.40 9.32 -39.59 -0.37 -1.77 16 19 C -0.12 -1.70 9.96 -39.42 -0.39 -2.09 16 20 C 0.03 0.52 6.49 -39.13 -0.25 0.27 16 21 C 0.05 0.75 6.49 -39.14 -0.25 0.50 16 22 C -0.11 -1.80 9.58 -39.43 -0.38 -2.18 16 23 O -0.31 -4.50 10.42 -32.89 -0.34 -4.84 16 24 C 0.02 0.21 7.26 37.40 0.27 0.48 16 25 C 0.02 0.20 7.26 37.40 0.27 0.48 16 26 O -0.31 -4.24 10.42 -32.87 -0.34 -4.58 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.69 6.69 -51.93 -0.35 0.35 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.34 4.98 -51.93 -0.26 1.08 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 33 H 0.32 5.40 5.81 -39.29 -0.23 5.17 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.06 0.89 7.49 -51.93 -0.39 0.50 16 37 H 0.13 1.80 7.30 -52.49 -0.38 1.41 16 38 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.15 8.03 -52.48 -0.42 1.73 16 40 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.12 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 340.02 15.07 5.12 5.12 Total: -1.00 -31.87 340.02 -8.05 -39.92 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.59 Total: 6.49 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -1.73 Total: -18.62 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.22 Total: -39.96 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.69 Total: -9.43 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.38 Total: 16.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.87 -8.05 -39.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.522 kcal (2) G-P(sol) polarization free energy of solvation -31.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds