Wall clock time and date at job start Tue Mar 31 2020 06:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47030 * 2 1 4 4 H 1.09000 * 109.47085 * 306.15669 * 3 2 1 5 5 C 1.50707 * 109.47027 * 186.16590 * 3 2 1 6 6 H 1.07997 * 119.99964 * 244.74433 * 5 3 2 7 7 C 1.37882 * 120.00109 * 64.74258 * 5 3 2 8 8 N 1.31512 * 120.00074 * 195.17050 * 7 5 3 9 9 Si 1.86798 * 119.99884 * 15.16976 * 7 5 3 10 10 H 1.48504 * 109.47312 * 92.26747 * 9 7 5 11 11 H 1.48496 * 109.47265 * 212.27089 * 9 7 5 12 12 H 1.48504 * 109.47338 * 332.26959 * 9 7 5 13 13 N 1.46890 * 109.47667 * 66.16595 * 3 2 1 14 14 C 1.46900 * 111.00371 * 202.74034 * 13 3 2 15 15 H 1.09000 * 109.46608 * 326.84938 * 14 13 3 16 16 C 1.52993 * 109.47295 * 86.84892 * 14 13 3 17 17 C 1.50701 * 109.47203 * 206.85250 * 14 13 3 18 18 C 1.38254 * 119.94298 * 319.99659 * 17 14 13 19 19 C 1.38191 * 120.11658 * 180.02562 * 18 17 14 20 20 C 1.38709 * 120.06587 * 0.02562 * 19 18 17 21 21 C 1.38980 * 119.81488 * 359.87636 * 20 19 18 22 22 C 1.38192 * 119.94343 * 139.71814 * 17 14 13 23 23 O 1.36110 * 120.77686 * 180.36281 * 21 20 19 24 24 C 1.43170 * 116.69552 * 342.52752 * 23 21 20 25 25 C 1.53475 * 108.23876 * 46.30264 * 24 23 21 26 26 O 1.36104 * 119.40604 * 179.64702 * 20 19 18 27 27 H 1.08995 * 109.47085 * 173.94370 * 1 2 3 28 28 H 1.08993 * 109.46924 * 53.94094 * 1 2 3 29 29 H 1.09005 * 109.47129 * 293.94161 * 1 2 3 30 30 H 1.09002 * 109.47120 * 119.99540 * 2 1 3 31 31 H 1.08999 * 109.47107 * 239.99204 * 2 1 3 32 32 H 0.97000 * 120.00080 * 180.02562 * 8 7 5 33 33 H 1.00909 * 110.99618 * 326.68858 * 13 3 2 34 34 H 1.09001 * 109.47365 * 64.74885 * 16 14 13 35 35 H 1.09008 * 109.47235 * 184.75030 * 16 14 13 36 36 H 1.08999 * 109.47355 * 304.74372 * 16 14 13 37 37 H 1.07995 * 119.94088 * 0.04116 * 18 17 14 38 38 H 1.08002 * 119.97188 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.97063 * 359.97438 * 22 17 14 40 40 H 1.09001 * 109.70994 * 165.99103 * 24 23 21 41 41 H 1.09000 * 109.71294 * 286.61947 * 24 23 21 42 42 H 1.09005 * 109.70124 * 59.98811 * 25 24 23 43 43 H 1.08991 * 109.70928 * 180.60755 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5894 1.9871 -0.8297 5 6 3.5393 1.4452 -0.1526 6 1 4.1629 1.8147 0.6480 7 6 4.1149 0.9760 -1.3143 8 7 5.3996 0.6966 -1.3454 9 14 3.0699 0.7371 -2.8441 10 1 3.1137 1.9698 -3.6710 11 1 3.5983 -0.4059 -3.6311 12 1 1.6667 0.4576 -2.4464 13 7 1.6756 2.0908 1.2667 14 6 1.6460 3.5522 1.1208 15 1 2.4034 3.8608 0.4003 16 6 0.2649 3.9875 0.6270 17 6 1.9288 4.1960 2.4538 18 6 1.3854 3.6617 3.6073 19 6 1.6419 4.2494 4.8314 20 6 2.4452 5.3778 4.9058 21 6 2.9931 5.9136 3.7464 22 6 2.7354 5.3160 2.5216 23 8 3.7899 7.0159 3.7975 24 6 3.7237 7.8026 4.9919 25 6 3.7907 6.8538 6.1964 26 8 2.6832 5.9499 6.1176 27 1 -0.3633 -1.0219 -0.1084 28 1 -0.3633 0.6049 -0.8307 29 1 -0.3634 0.4171 0.9393 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5140 -0.8899 32 1 5.8046 0.3668 -2.1628 33 1 0.7923 1.7436 1.6096 34 1 -0.4824 3.7544 1.3855 35 1 0.2683 5.0611 0.4381 36 1 0.0248 3.4574 -0.2946 37 1 0.7596 2.7833 3.5517 38 1 1.2166 3.8298 5.7311 39 1 3.1627 5.7285 1.6195 40 1 4.5644 8.4957 5.0226 41 1 2.7867 8.3591 5.0140 42 1 4.7251 6.2932 6.1710 43 1 3.7311 7.4284 7.1206 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:39 Heat of formation + Delta-G solvation = -68.908518 kcal Electronic energy + Delta-G solvation = -23653.882125 eV Core-core repulsion = 20277.738067 eV Total energy + Delta-G solvation = -3376.144058 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16395 -39.71932 -38.18889 -37.93393 -35.05994 -33.89467 -31.84748 -31.55046 -30.19574 -28.91322 -28.39147 -25.85389 -24.54472 -23.78487 -23.06406 -21.49608 -20.95045 -19.52399 -18.80489 -18.18401 -18.01999 -16.79404 -16.50622 -16.34949 -15.89906 -15.88538 -15.35369 -15.16661 -14.97249 -14.80516 -14.71180 -14.33430 -14.10300 -13.80915 -13.66390 -13.42382 -13.29822 -12.79293 -12.71913 -12.54155 -12.35777 -12.15341 -11.96701 -11.86777 -11.73879 -11.66663 -11.36421 -11.21095 -11.08850 -10.61279 -9.54850 -8.97551 -8.89589 -8.24168 -6.20696 0.34933 0.39993 1.34648 1.38165 1.47661 2.10318 2.32410 2.38266 2.75146 3.09232 3.34468 3.56385 3.71977 3.95288 3.98153 4.10962 4.22457 4.31981 4.41905 4.43181 4.46765 4.49163 4.51986 4.56827 4.59568 4.64335 4.84743 4.88041 4.95220 5.08336 5.14985 5.20833 5.21281 5.24078 5.33734 5.37089 5.55223 5.67813 5.77837 5.85575 5.96623 6.17070 6.46950 6.56896 6.85988 7.06144 7.42616 8.93732 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.004132 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.917055 B = 6774.208978 C = 7376.484355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.202 3.798 4 H -0.002 1.002 5 C -0.502 4.502 6 H 0.024 0.976 7 C 0.012 3.988 8 N -0.949 5.949 9 Si 0.925 3.075 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.221 1.221 13 N -0.674 5.674 14 C 0.128 3.872 15 H 0.058 0.942 16 C -0.165 4.165 17 C -0.056 4.056 18 C -0.094 4.094 19 C -0.116 4.116 20 C 0.030 3.970 21 C 0.039 3.961 22 C -0.131 4.131 23 O -0.330 6.330 24 C 0.014 3.986 25 C 0.015 3.985 26 O -0.320 6.320 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.262 0.738 33 H 0.338 0.662 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.151 0.849 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 11.761 12.602 20.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.093 3.907 4 H 0.016 0.984 5 C -0.540 4.540 6 H 0.043 0.957 7 C -0.185 4.185 8 N -0.590 5.590 9 Si 0.749 3.251 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.143 1.143 13 N -0.306 5.306 14 C 0.018 3.982 15 H 0.076 0.924 16 C -0.224 4.224 17 C -0.057 4.057 18 C -0.112 4.112 19 C -0.134 4.134 20 C -0.015 4.015 21 C -0.006 4.006 22 C -0.150 4.150 23 O -0.246 6.246 24 C -0.061 4.061 25 C -0.060 4.060 26 O -0.235 6.235 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.158 0.842 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.164 0.836 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.168 0.832 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.927 11.719 12.784 20.498 hybrid contribution 0.082 0.116 -1.438 1.445 sum -10.845 11.834 11.345 19.657 Atomic orbital electron populations 1.21836 0.94614 1.02114 1.01879 1.21960 0.95910 0.97877 1.00826 1.19314 0.93050 0.91236 0.87097 0.98407 1.21262 0.91992 1.40160 1.00602 0.95728 1.25776 0.95862 0.94736 1.02082 1.70142 1.13915 1.46404 1.28497 0.86203 0.82009 0.77505 0.79347 1.20763 1.21592 1.14338 1.60360 1.36464 1.03098 1.30649 1.20266 0.97231 0.88266 0.92468 0.92411 1.22388 0.96182 1.02188 1.01602 1.19681 0.96155 0.93752 0.96115 1.20846 1.00519 0.99611 0.90271 1.20665 1.00049 0.93260 0.99456 1.18981 1.02360 0.96429 0.83728 1.18861 0.97769 0.90400 0.93525 1.20368 1.00934 0.98165 0.95566 1.86279 1.60675 1.36109 1.41520 1.23963 1.06287 0.93189 0.82644 1.23923 0.88558 0.91720 1.01815 1.86244 1.49962 1.59560 1.27754 0.91759 0.93263 0.91243 0.92794 0.93844 0.92900 0.84192 0.90540 0.91592 0.92533 0.83574 0.82920 0.86037 0.83172 0.89904 0.91047 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 9.63 71.98 0.69 -3.60 16 2 C -0.13 -5.09 4.78 30.59 0.15 -4.94 16 3 C 0.20 9.05 1.39 44.17 0.06 9.11 16 4 H 0.00 -0.07 5.89 -2.39 -0.01 -0.08 16 5 C -0.50 -28.95 8.82 25.60 0.23 -28.73 16 6 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 7 C 0.01 0.72 5.33 84.66 0.45 1.17 16 8 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 9 Si 0.93 43.61 25.77 68.60 1.77 45.38 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.22 -9.16 5.50 99.48 0.55 -8.62 16 13 N -0.67 -25.86 5.46 -477.18 -2.61 -28.46 16 14 C 0.13 4.57 2.59 44.17 0.11 4.68 16 15 H 0.06 2.48 7.39 -2.39 -0.02 2.46 16 16 C -0.16 -4.54 9.13 71.98 0.66 -3.89 16 17 C -0.06 -1.90 4.95 -19.87 -0.10 -1.99 16 18 C -0.09 -2.76 9.32 22.26 0.21 -2.56 16 19 C -0.12 -3.22 9.96 22.37 0.22 -2.99 16 20 C 0.03 0.89 6.49 22.56 0.15 1.03 16 21 C 0.04 1.27 6.49 22.56 0.15 1.42 16 22 C -0.13 -4.59 9.58 22.37 0.21 -4.38 16 23 O -0.33 -9.64 10.42 -82.57 -0.86 -10.50 16 24 C 0.01 0.24 7.26 72.14 0.52 0.77 16 25 C 0.01 0.25 7.26 72.14 0.52 0.77 16 26 O -0.32 -8.11 10.42 -82.50 -0.86 -8.97 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.72 6.69 -2.38 -0.02 1.70 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.86 4.98 -2.39 -0.01 1.85 16 32 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.34 10.67 5.81 -89.69 -0.52 10.14 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.06 1.58 7.49 -2.39 -0.02 1.56 16 37 H 0.15 3.71 7.30 -2.91 -0.02 3.69 16 38 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 39 H 0.12 4.32 8.03 -2.91 -0.02 4.30 16 40 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -73.62 340.02 2.30 -71.32 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.33 Total: 25.72 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.24 Total: -34.13 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -2.31 Total: -88.82 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.72 Total: -19.47 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.77 Total: 45.38 kcal Total: -73.62 2.30 -71.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.408 kcal (2) G-P(sol) polarization free energy of solvation -73.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds