Wall clock time and date at job start Tue Mar 31 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47150 * 2 1 4 4 H 1.09004 * 109.47389 * 54.82049 * 3 2 1 5 5 C 1.50701 * 109.47286 * 174.82653 * 3 2 1 6 6 H 1.07997 * 120.00210 * 120.00068 * 5 3 2 7 7 C 1.37881 * 119.99592 * 299.99600 * 5 3 2 8 8 N 1.31507 * 120.00098 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99557 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46973 * 90.00067 * 9 7 5 11 11 H 1.48502 * 109.46723 * 209.99634 * 9 7 5 12 12 H 1.48495 * 109.47334 * 329.99670 * 9 7 5 13 13 N 1.46900 * 109.46874 * 294.82335 * 3 2 1 14 14 C 1.46904 * 111.00307 * 155.28242 * 13 3 2 15 15 H 1.08997 * 109.46578 * 35.94892 * 14 13 3 16 16 C 1.53005 * 109.46903 * 275.94977 * 14 13 3 17 17 C 1.50699 * 109.47038 * 155.94939 * 14 13 3 18 18 C 1.38244 * 119.94221 * 39.72609 * 17 14 13 19 19 C 1.38205 * 120.10653 * 179.81842 * 18 17 14 20 20 C 1.38701 * 120.06595 * 0.49858 * 19 18 17 21 21 C 1.38967 * 119.82378 * 359.64273 * 20 19 18 22 22 C 1.38196 * 119.93670 * 220.00201 * 17 14 13 23 23 O 1.36111 * 120.78295 * 180.40880 * 21 20 19 24 24 C 1.43171 * 116.71269 * 342.73607 * 23 21 20 25 25 C 1.53477 * 108.25513 * 46.17615 * 24 23 21 26 26 O 1.36110 * 119.39100 * 179.58215 * 20 19 18 27 27 H 1.09002 * 109.46642 * 175.48491 * 1 2 3 28 28 H 1.09002 * 109.47220 * 295.48013 * 1 2 3 29 29 H 1.08994 * 109.46871 * 55.48462 * 1 2 3 30 30 H 1.08996 * 109.47082 * 239.99455 * 2 1 3 31 31 H 1.09001 * 109.47243 * 119.99472 * 2 1 3 32 32 H 0.97002 * 120.00063 * 180.02562 * 8 7 5 33 33 H 1.00905 * 111.00174 * 279.23976 * 13 3 2 34 34 H 1.08998 * 109.46543 * 185.23087 * 16 14 13 35 35 H 1.08997 * 109.47116 * 305.23502 * 16 14 13 36 36 H 1.09000 * 109.46881 * 65.23460 * 16 14 13 37 37 H 1.07996 * 119.94886 * 0.04977 * 18 17 14 38 38 H 1.08000 * 119.96483 * 180.24387 * 19 18 17 39 39 H 1.07997 * 119.96974 * 359.97315 * 22 17 14 40 40 H 1.09004 * 109.70987 * 286.49257 * 24 23 21 41 41 H 1.09000 * 109.74415 * 165.88431 * 24 23 21 42 42 H 1.08996 * 109.71063 * 180.58962 * 25 24 23 43 43 H 1.09000 * 109.74270 * 59.98023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9824 0.8400 5 6 3.5416 1.4444 0.1281 6 1 4.1491 1.8882 -0.6467 7 6 4.1397 0.8797 1.2346 8 7 3.3999 0.3398 2.1784 9 14 6.0009 0.8828 1.3938 10 1 6.4355 2.1164 2.0968 11 1 6.4333 -0.3074 2.1695 12 1 6.6135 0.8416 0.0417 13 7 1.6550 2.0979 -1.2570 14 6 1.5822 3.5556 -1.0900 15 1 2.3634 3.8820 -0.4036 16 6 0.2131 3.9361 -0.5227 17 6 1.7759 4.2246 -2.4264 18 6 1.1993 3.6821 -3.5597 19 6 1.3716 4.2949 -4.7864 20 6 2.1323 5.4505 -4.8851 21 6 2.7142 5.9942 -3.7463 22 6 2.5343 5.3763 -2.5176 23 8 3.4576 7.1321 -3.8194 24 6 3.9230 7.5144 -5.1183 25 6 2.7515 7.3966 -6.1027 26 8 2.3000 6.0379 -6.1014 27 1 -0.3633 -1.0245 -0.0809 28 1 -0.3634 0.4421 0.9277 29 1 -0.3633 0.5823 -0.8467 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8207 -0.0571 2.9570 33 1 2.2884 1.8506 -2.0026 34 1 0.1242 5.0218 -0.4858 35 1 -0.5707 3.5288 -1.1613 36 1 0.1106 3.5287 0.4831 37 1 0.6102 2.7799 -3.4858 38 1 0.9169 3.8712 -5.6696 39 1 2.9869 5.7958 -1.6313 40 1 4.7317 6.8526 -5.4286 41 1 4.2799 8.5440 -5.0932 42 1 3.0831 7.6729 -7.1036 43 1 1.9401 8.0538 -5.7898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:43 Heat of formation + Delta-G solvation = -56.985805 kcal Electronic energy + Delta-G solvation = -23604.083796 eV Core-core repulsion = 20228.456746 eV Total energy + Delta-G solvation = -3375.627051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.18442 -38.38147 -37.21961 -36.09066 -33.39078 -31.54373 -30.87421 -30.26139 -28.84029 -27.79350 -25.92125 -24.85250 -23.11404 -22.44462 -21.65647 -19.79454 -19.32742 -18.49712 -17.18177 -17.02238 -16.53127 -15.42394 -15.17426 -14.85281 -14.68298 -14.41144 -14.35832 -13.72147 -13.55341 -13.51042 -12.98628 -12.78505 -12.71548 -12.18084 -11.82079 -11.67109 -11.42023 -11.26476 -11.16242 -11.09092 -10.83768 -10.73977 -10.63089 -10.59890 -10.23636 -10.07977 -9.55591 -9.47702 -9.02727 -8.43004 -8.34718 -7.83943 -7.27187 -5.98101 -4.10642 1.47170 1.50629 3.01099 3.20211 3.27942 3.35325 3.38745 3.89624 4.12410 4.41221 4.63436 4.69762 4.73009 5.02857 5.16127 5.24920 5.27612 5.31028 5.49143 5.53402 5.68368 6.00052 6.04214 6.12538 6.25558 6.30663 6.41668 6.45658 6.55036 6.60379 6.72554 6.78498 6.84812 6.92032 6.99686 7.16219 7.20825 7.47589 7.48882 7.62585 7.80241 8.11282 8.17643 8.35161 8.67883 9.02245 9.57096 11.01925 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.004313 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.543929 B = 6489.933601 C = 7492.093546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.035 0.965 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.681 5.681 14 C 0.127 3.873 15 H 0.057 0.943 16 C -0.129 4.129 17 C -0.064 4.064 18 C -0.094 4.094 19 C -0.117 4.117 20 C 0.036 3.964 21 C 0.045 3.955 22 C -0.108 4.108 23 O -0.309 6.309 24 C 0.021 3.979 25 C 0.022 3.978 26 O -0.311 6.311 27 H 0.023 0.977 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.090 0.910 32 H 0.261 0.739 33 H 0.330 0.670 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.142 0.858 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 12.092 -13.438 18.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.053 0.947 5 C -0.584 4.584 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.311 5.311 14 C 0.017 3.983 15 H 0.075 0.925 16 C -0.187 4.187 17 C -0.065 4.065 18 C -0.113 4.113 19 C -0.135 4.135 20 C -0.008 4.008 21 C 0.001 3.999 22 C -0.128 4.128 23 O -0.224 6.224 24 C -0.055 4.055 25 C -0.054 4.054 26 O -0.226 6.226 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.147 0.853 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.160 0.840 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.914 11.939 -13.173 18.204 hybrid contribution 2.285 0.433 0.070 2.326 sum -1.630 12.372 -13.103 18.094 Atomic orbital electron populations 1.21715 0.99009 0.98424 1.00386 1.21484 0.92096 0.99217 1.01622 1.19175 0.92706 0.91231 0.86170 0.94730 1.21884 0.92845 1.38176 1.05468 0.92900 1.24908 0.97756 0.94997 0.95738 1.69872 1.34734 1.38352 1.09345 0.86691 0.86286 0.77511 0.78087 1.20785 1.21184 1.20040 1.61069 1.55651 1.04267 1.10096 1.20292 0.97350 0.89930 0.90734 0.92528 1.21752 0.96538 0.99219 1.01231 1.19998 0.95930 0.94046 0.96538 1.20923 0.99781 1.00179 0.90384 1.20443 0.99370 0.94878 0.98835 1.18856 1.01046 0.96969 0.83961 1.18809 0.96984 0.89819 0.94307 1.20377 1.01298 0.95661 0.95426 1.86301 1.66943 1.39254 1.29935 1.23568 0.96285 1.02873 0.82768 1.23555 0.97202 0.82648 1.02008 1.86283 1.83618 1.26604 1.26095 0.95768 0.94587 0.93056 0.95174 0.89224 0.92924 0.85311 0.93695 0.92458 0.92295 0.83987 0.85176 0.84998 0.90697 0.86438 0.86487 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.85 37.16 0.37 -2.41 16 2 C -0.11 -2.48 5.45 -26.73 -0.15 -2.62 16 3 C 0.21 5.14 1.79 -68.87 -0.12 5.02 16 4 H 0.03 0.92 7.09 -51.93 -0.37 0.55 16 5 C -0.54 -14.46 8.25 -34.44 -0.28 -14.75 16 6 H 0.05 1.42 7.75 -52.49 -0.41 1.01 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.74 11.29 55.43 0.63 -24.11 16 9 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -13.61 4.80 -102.16 -0.49 -14.10 16 14 C 0.13 2.32 2.63 -68.86 -0.18 2.14 16 15 H 0.06 1.17 7.49 -51.93 -0.39 0.78 16 16 C -0.13 -2.14 9.34 37.16 0.35 -1.79 16 17 C -0.06 -1.05 4.72 -104.64 -0.49 -1.55 16 18 C -0.09 -1.41 9.01 -39.59 -0.36 -1.77 16 19 C -0.12 -1.65 9.96 -39.42 -0.39 -2.04 16 20 C 0.04 0.53 6.49 -39.14 -0.25 0.28 16 21 C 0.05 0.70 6.49 -39.14 -0.25 0.44 16 22 C -0.11 -1.75 9.58 -39.42 -0.38 -2.13 16 23 O -0.31 -4.33 10.42 -32.88 -0.34 -4.67 16 24 C 0.02 0.20 7.26 37.40 0.27 0.47 16 25 C 0.02 0.20 7.26 37.40 0.27 0.47 16 26 O -0.31 -4.07 10.42 -32.88 -0.34 -4.41 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.98 7.64 -51.93 -0.40 0.58 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.36 5.95 -51.93 -0.31 2.06 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.33 6.72 7.72 -39.29 -0.30 6.42 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.04 7.43 -51.93 -0.39 0.66 16 37 H 0.14 2.05 7.70 -52.49 -0.40 1.64 16 38 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.13 2.08 8.03 -52.49 -0.42 1.66 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -28.99 347.61 -8.78 -37.77 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.75 Total: 6.63 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: -1.70 Total: -18.48 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.14 Total: -38.21 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.69 Total: -9.09 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.99 -8.78 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.214 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds