Wall clock time and date at job start Tue Mar 31 2020 06:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47150 * 2 1 4 4 H 1.09004 * 109.47389 * 54.82049 * 3 2 1 5 5 C 1.50701 * 109.47286 * 174.82653 * 3 2 1 6 6 H 1.07997 * 120.00210 * 120.00068 * 5 3 2 7 7 C 1.37881 * 119.99592 * 299.99600 * 5 3 2 8 8 N 1.31507 * 120.00098 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99557 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46973 * 90.00067 * 9 7 5 11 11 H 1.48502 * 109.46723 * 209.99634 * 9 7 5 12 12 H 1.48495 * 109.47334 * 329.99670 * 9 7 5 13 13 N 1.46900 * 109.46874 * 294.82335 * 3 2 1 14 14 C 1.46904 * 111.00307 * 155.28242 * 13 3 2 15 15 H 1.08997 * 109.46578 * 35.94892 * 14 13 3 16 16 C 1.53005 * 109.46903 * 275.94977 * 14 13 3 17 17 C 1.50699 * 109.47038 * 155.94939 * 14 13 3 18 18 C 1.38244 * 119.94221 * 39.72609 * 17 14 13 19 19 C 1.38205 * 120.10653 * 179.81842 * 18 17 14 20 20 C 1.38701 * 120.06595 * 0.49858 * 19 18 17 21 21 C 1.38967 * 119.82378 * 359.64273 * 20 19 18 22 22 C 1.38196 * 119.93670 * 220.00201 * 17 14 13 23 23 O 1.36111 * 120.78295 * 180.40880 * 21 20 19 24 24 C 1.43171 * 116.71269 * 342.73607 * 23 21 20 25 25 C 1.53477 * 108.25513 * 46.17615 * 24 23 21 26 26 O 1.36110 * 119.39100 * 179.58215 * 20 19 18 27 27 H 1.09002 * 109.46642 * 175.48491 * 1 2 3 28 28 H 1.09002 * 109.47220 * 295.48013 * 1 2 3 29 29 H 1.08994 * 109.46871 * 55.48462 * 1 2 3 30 30 H 1.08996 * 109.47082 * 239.99455 * 2 1 3 31 31 H 1.09001 * 109.47243 * 119.99472 * 2 1 3 32 32 H 0.97002 * 120.00063 * 180.02562 * 8 7 5 33 33 H 1.00905 * 111.00174 * 279.23976 * 13 3 2 34 34 H 1.08998 * 109.46543 * 185.23087 * 16 14 13 35 35 H 1.08997 * 109.47116 * 305.23502 * 16 14 13 36 36 H 1.09000 * 109.46881 * 65.23460 * 16 14 13 37 37 H 1.07996 * 119.94886 * 0.04977 * 18 17 14 38 38 H 1.08000 * 119.96483 * 180.24387 * 19 18 17 39 39 H 1.07997 * 119.96974 * 359.97315 * 22 17 14 40 40 H 1.09004 * 109.70987 * 286.49257 * 24 23 21 41 41 H 1.09000 * 109.74415 * 165.88431 * 24 23 21 42 42 H 1.08996 * 109.71063 * 180.58962 * 25 24 23 43 43 H 1.09000 * 109.74270 * 59.98023 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6029 1.9824 0.8400 5 6 3.5416 1.4444 0.1281 6 1 4.1491 1.8882 -0.6467 7 6 4.1397 0.8797 1.2346 8 7 3.3999 0.3398 2.1784 9 14 6.0009 0.8828 1.3938 10 1 6.4355 2.1164 2.0968 11 1 6.4333 -0.3074 2.1695 12 1 6.6135 0.8416 0.0417 13 7 1.6550 2.0979 -1.2570 14 6 1.5822 3.5556 -1.0900 15 1 2.3634 3.8820 -0.4036 16 6 0.2131 3.9361 -0.5227 17 6 1.7759 4.2246 -2.4264 18 6 1.1993 3.6821 -3.5597 19 6 1.3716 4.2949 -4.7864 20 6 2.1323 5.4505 -4.8851 21 6 2.7142 5.9942 -3.7463 22 6 2.5343 5.3763 -2.5176 23 8 3.4576 7.1321 -3.8194 24 6 3.9230 7.5144 -5.1183 25 6 2.7515 7.3966 -6.1027 26 8 2.3000 6.0379 -6.1014 27 1 -0.3633 -1.0245 -0.0809 28 1 -0.3634 0.4421 0.9277 29 1 -0.3633 0.5823 -0.8467 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.8207 -0.0571 2.9570 33 1 2.2884 1.8506 -2.0026 34 1 0.1242 5.0218 -0.4858 35 1 -0.5707 3.5288 -1.1613 36 1 0.1106 3.5287 0.4831 37 1 0.6102 2.7799 -3.4858 38 1 0.9169 3.8712 -5.6696 39 1 2.9869 5.7958 -1.6313 40 1 4.7317 6.8526 -5.4286 41 1 4.2799 8.5440 -5.0932 42 1 3.0831 7.6729 -7.1036 43 1 1.9401 8.0538 -5.7898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:43 Heat of formation + Delta-G solvation = -73.632141 kcal Electronic energy + Delta-G solvation = -23604.805636 eV Core-core repulsion = 20228.456746 eV Total energy + Delta-G solvation = -3376.348890 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.19688 -39.65649 -38.20989 -37.68485 -35.05230 -33.41215 -31.86192 -31.53374 -30.29466 -28.93781 -27.82631 -25.84170 -24.79710 -23.75828 -22.87219 -21.29793 -20.85263 -19.53617 -18.67187 -18.18731 -17.98463 -16.81103 -16.45105 -16.18051 -16.00843 -15.73359 -15.37559 -15.26363 -14.81740 -14.77161 -14.44519 -14.15975 -14.04812 -13.70172 -13.24526 -13.18843 -13.06253 -12.85708 -12.75977 -12.50638 -12.40772 -12.02831 -11.97632 -11.93465 -11.86015 -11.45233 -11.38118 -11.29125 -10.92133 -10.42308 -9.57977 -9.04922 -8.97228 -8.03773 -6.24974 0.29381 0.35295 1.36425 1.38814 1.47410 2.06954 2.30771 2.40502 2.72435 3.16060 3.32145 3.67190 3.69802 3.86684 3.96438 4.10307 4.24525 4.39197 4.46272 4.53179 4.59277 4.61077 4.69566 4.72867 4.84882 4.89334 4.91935 5.02650 5.12621 5.17691 5.20956 5.27429 5.41604 5.49505 5.55989 5.62705 5.69661 5.75597 5.85079 5.93489 6.15990 6.25612 6.42191 6.44801 6.85169 7.04768 7.46167 8.92377 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.004313 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.543929 B = 6489.933601 C = 7492.093546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 C 0.224 3.776 4 H 0.005 0.995 5 C -0.558 4.558 6 H 0.044 0.956 7 C 0.023 3.977 8 N -0.908 5.908 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.131 3.869 15 H 0.024 0.976 16 C -0.122 4.122 17 C -0.076 4.076 18 C -0.094 4.094 19 C -0.115 4.115 20 C 0.036 3.964 21 C 0.040 3.960 22 C -0.125 4.125 23 O -0.328 6.328 24 C 0.012 3.988 25 C 0.016 3.984 26 O -0.321 6.321 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.063 0.937 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.261 0.739 33 H 0.329 0.671 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.040 0.960 37 H 0.148 0.852 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.075 0.925 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 13.080 -15.703 20.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.140 4.140 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.597 4.597 6 H 0.063 0.937 7 C -0.177 4.177 8 N -0.547 5.547 9 Si 0.770 3.230 10 H -0.206 1.206 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.294 5.294 14 C 0.021 3.979 15 H 0.042 0.958 16 C -0.179 4.179 17 C -0.076 4.076 18 C -0.112 4.112 19 C -0.133 4.133 20 C -0.009 4.009 21 C -0.005 4.005 22 C -0.144 4.144 23 O -0.243 6.243 24 C -0.063 4.063 25 C -0.058 4.058 26 O -0.236 6.236 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.166 0.834 38 H 0.171 0.829 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.171 0.829 42 H 0.173 0.827 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.979 12.946 -15.455 20.550 hybrid contribution 2.348 0.257 0.677 2.457 sum -1.632 13.202 -14.778 19.884 Atomic orbital electron populations 1.21572 0.96255 0.99884 1.00566 1.21340 0.94530 0.98250 0.99923 1.18927 0.91167 0.91597 0.86798 0.97716 1.22178 0.94369 1.37836 1.05299 0.93733 1.25578 1.01589 0.94892 0.95610 1.69992 1.36147 1.38928 1.09682 0.85786 0.81723 0.77513 0.77973 1.20590 1.20657 1.19827 1.61015 1.54826 1.05372 1.08194 1.20217 0.97308 0.88746 0.91640 0.95800 1.21674 0.95761 1.00302 1.00198 1.19762 0.97434 0.94575 0.95860 1.20952 0.99665 1.00308 0.90261 1.20683 0.98889 0.94547 0.99173 1.18993 1.00451 0.97055 0.84387 1.18840 0.97238 0.90287 0.94140 1.20380 1.01900 0.96170 0.95940 1.86270 1.66743 1.38516 1.32782 1.23969 0.96421 1.04823 0.81052 1.23935 0.97118 0.80723 1.04054 1.86268 1.83614 1.28647 1.25043 0.93803 0.95202 0.91832 0.95371 0.92291 0.92935 0.85447 0.92022 0.91251 0.94072 0.83390 0.82880 0.85767 0.90697 0.82888 0.82664 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.95 9.85 71.98 0.71 -4.24 16 2 C -0.10 -4.83 5.45 30.59 0.17 -4.66 16 3 C 0.22 11.00 1.79 44.17 0.08 11.08 16 4 H 0.00 0.27 7.09 -2.39 -0.02 0.25 16 5 C -0.56 -30.39 8.25 25.60 0.21 -30.17 16 6 H 0.04 2.45 7.75 -2.91 -0.02 2.42 16 7 C 0.02 1.29 5.29 84.66 0.45 1.74 16 8 N -0.91 -51.97 11.29 21.45 0.24 -51.73 16 9 Si 0.94 44.02 29.54 68.60 2.03 46.04 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.66 -26.92 4.80 -477.14 -2.29 -29.21 16 14 C 0.13 4.89 2.63 44.17 0.12 5.01 16 15 H 0.02 1.05 7.49 -2.39 -0.02 1.03 16 16 C -0.12 -4.04 9.34 71.98 0.67 -3.36 16 17 C -0.08 -2.48 4.72 -19.87 -0.09 -2.57 16 18 C -0.09 -2.70 9.01 22.26 0.20 -2.50 16 19 C -0.11 -3.02 9.96 22.37 0.22 -2.80 16 20 C 0.04 1.00 6.49 22.56 0.15 1.15 16 21 C 0.04 1.20 6.49 22.56 0.15 1.34 16 22 C -0.12 -4.08 9.58 22.37 0.21 -3.87 16 23 O -0.33 -8.79 10.42 -82.58 -0.86 -9.65 16 24 C 0.01 0.20 7.26 72.14 0.52 0.72 16 25 C 0.02 0.24 7.26 72.14 0.52 0.77 16 26 O -0.32 -7.55 10.42 -82.58 -0.86 -8.41 16 27 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 2.34 7.64 -2.39 -0.02 2.32 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.06 3.18 5.95 -2.39 -0.01 3.17 16 32 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.33 13.50 7.72 -89.69 -0.69 12.81 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.04 1.49 7.43 -2.39 -0.02 1.47 16 37 H 0.15 4.04 7.70 -2.91 -0.02 4.02 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 39 H 0.12 4.11 8.03 -2.91 -0.02 4.09 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.16 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -63.41 347.61 2.85 -60.56 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.31 Total: 24.77 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 4.29 Total: -32.37 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.05 Total: -80.95 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -1.72 Total: -18.06 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.41 2.85 -60.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.069 kcal (2) G-P(sol) polarization free energy of solvation -63.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds