Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47323 * 2 1 4 4 H 1.09007 * 109.46671 * 306.08938 * 3 2 1 5 5 C 1.50690 * 109.47264 * 186.08880 * 3 2 1 6 6 H 1.08001 * 120.00198 * 244.69447 * 5 3 2 7 7 C 1.37879 * 120.00097 * 64.69115 * 5 3 2 8 8 N 1.31519 * 119.99935 * 192.44052 * 7 5 3 9 9 Si 1.86794 * 119.99960 * 12.44609 * 7 5 3 10 10 H 1.48496 * 109.47240 * 91.48763 * 9 7 5 11 11 H 1.48505 * 109.47102 * 211.48414 * 9 7 5 12 12 H 1.48497 * 109.47182 * 331.48422 * 9 7 5 13 13 N 1.46898 * 109.47096 * 66.08394 * 3 2 1 14 14 C 1.46901 * 111.00384 * 266.86229 * 13 3 2 15 15 H 1.09006 * 109.46765 * 38.23510 * 14 13 3 16 16 C 1.53005 * 109.46835 * 278.24089 * 14 13 3 17 17 C 1.50698 * 109.47243 * 158.23679 * 14 13 3 18 18 C 1.38254 * 119.94001 * 40.00110 * 17 14 13 19 19 C 1.38193 * 120.10947 * 180.02562 * 18 17 14 20 20 C 1.38698 * 120.06777 * 0.25483 * 19 18 17 21 21 C 1.38980 * 119.82013 * 359.34541 * 20 19 18 22 22 C 1.38196 * 119.94453 * 219.97686 * 17 14 13 23 23 O 1.36104 * 120.78005 * 180.70794 * 21 20 19 24 24 C 1.43513 * 116.57303 * 342.16791 * 23 21 20 25 25 C 1.53468 * 107.96451 * 46.81261 * 24 23 21 26 26 O 1.36108 * 119.39763 * 179.47068 * 20 19 18 27 27 H 1.09000 * 109.47071 * 303.15234 * 1 2 3 28 28 H 1.09001 * 109.46959 * 63.15246 * 1 2 3 29 29 H 1.09002 * 109.47268 * 183.15107 * 1 2 3 30 30 H 1.08998 * 109.47297 * 239.99937 * 2 1 3 31 31 H 1.09002 * 109.46992 * 119.99834 * 2 1 3 32 32 H 0.96994 * 119.99945 * 180.02562 * 8 7 5 33 33 H 1.00896 * 110.99644 * 142.90437 * 13 3 2 34 34 H 1.09002 * 109.46561 * 299.99567 * 16 14 13 35 35 H 1.08991 * 109.46930 * 59.99833 * 16 14 13 36 36 H 1.08999 * 109.46706 * 180.02562 * 16 14 13 37 37 H 1.07993 * 119.94697 * 0.06746 * 18 17 14 38 38 H 1.08001 * 119.96966 * 179.97438 * 19 18 17 39 39 H 1.08004 * 119.96260 * 0.02562 * 22 17 14 40 40 H 1.09001 * 110.17301 * 287.02356 * 24 23 21 41 41 H 1.08998 * 109.56016 * 166.24937 * 24 23 21 42 42 H 1.09003 * 109.71143 * 180.22303 * 25 24 23 43 43 H 1.08993 * 109.74567 * 59.61181 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5904 1.9868 -0.8305 5 6 3.5394 1.4452 -0.1507 6 1 4.1620 1.8157 0.6502 7 6 4.1165 0.9744 -1.3110 8 7 5.4110 0.7460 -1.3560 9 14 3.0599 0.6612 -2.8193 10 1 3.0268 1.8828 -3.6628 11 1 3.6333 -0.4643 -3.6003 12 1 1.6798 0.3158 -2.3937 13 7 1.6740 2.0913 1.2661 14 6 0.3957 2.8045 1.1419 15 1 -0.2851 2.2241 0.5191 16 6 0.6351 4.1719 0.4984 17 6 -0.2100 2.9917 2.5090 18 6 0.5975 3.3176 3.5828 19 6 0.0458 3.4895 4.8381 20 6 -1.3193 3.3303 5.0250 21 6 -2.1322 3.0108 3.9439 22 6 -1.5718 2.8377 2.6871 23 8 -3.4760 2.8641 4.1024 24 6 -3.9459 2.6608 5.4430 25 6 -3.2618 3.6957 6.3464 26 8 -1.8466 3.4922 6.2692 27 1 -0.3633 0.5620 0.8604 28 1 -0.3633 0.4641 -0.9169 29 1 -0.3634 -1.0261 0.0565 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.8170 0.4152 -2.1724 33 1 2.4054 2.7119 1.5790 34 1 1.3160 4.7522 1.1212 35 1 1.0732 4.0364 -0.4903 36 1 -0.3133 4.7013 0.4067 37 1 1.6611 3.4387 3.4402 38 1 0.6788 3.7437 5.6754 39 1 -2.2003 2.5830 1.8465 40 1 -3.6952 1.6552 5.7808 41 1 -5.0263 2.8009 5.4762 42 1 -3.5965 3.5639 7.3754 43 1 -3.5077 4.7015 6.0059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = -45.166663 kcal Electronic energy + Delta-G solvation = -23723.121695 eV Core-core repulsion = 20348.007161 eV Total energy + Delta-G solvation = -3375.114534 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.21946 -38.57968 -37.24775 -36.48604 -33.39405 -31.84665 -30.91734 -30.55245 -29.02723 -27.83357 -26.52027 -24.91350 -22.96545 -22.51132 -21.91848 -20.01054 -19.60751 -18.58157 -17.29092 -17.18578 -16.60398 -15.59330 -15.44844 -15.06847 -14.54492 -14.45276 -14.27883 -13.78733 -13.77491 -13.55544 -13.12276 -12.99417 -12.70770 -12.68008 -12.36052 -11.90145 -11.84663 -11.63145 -11.24270 -11.17792 -11.02002 -10.91307 -10.80491 -10.51111 -10.44736 -9.98207 -9.86514 -9.26550 -9.06031 -8.50223 -8.48524 -7.88810 -7.44618 -6.12059 -4.08767 1.43305 1.46213 2.96432 3.15765 3.26887 3.37002 3.39920 3.84584 4.08504 4.40294 4.59004 4.65096 4.68669 4.91590 5.05443 5.16916 5.23223 5.25865 5.39709 5.46341 5.50864 5.69200 5.72813 5.93416 6.01914 6.07281 6.10467 6.21987 6.25877 6.28218 6.35065 6.48520 6.71219 6.74221 6.79037 6.84571 6.90388 7.03074 7.08964 7.43454 7.46526 7.66713 7.97329 8.35413 8.61624 8.95854 9.53078 11.00867 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.030792 B = 0.003747 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.119453 B = 7470.672965 C = 7810.461212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C 0.193 3.807 4 H 0.002 0.998 5 C -0.527 4.527 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.669 5.669 14 C 0.111 3.889 15 H 0.091 0.909 16 C -0.176 4.176 17 C -0.047 4.047 18 C -0.091 4.091 19 C -0.114 4.114 20 C 0.036 3.964 21 C 0.046 3.954 22 C -0.113 4.113 23 O -0.310 6.310 24 C 0.021 3.979 25 C 0.022 3.978 26 O -0.311 6.311 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.263 0.737 33 H 0.340 0.660 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.130 0.870 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.927 6.081 11.987 22.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.150 4.150 3 C 0.084 3.916 4 H 0.020 0.980 5 C -0.565 4.565 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.688 3.312 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.300 5.300 14 C 0.001 3.999 15 H 0.109 0.891 16 C -0.235 4.235 17 C -0.048 4.048 18 C -0.109 4.109 19 C -0.132 4.132 20 C -0.009 4.009 21 C 0.001 3.999 22 C -0.132 4.132 23 O -0.225 6.225 24 C -0.055 4.055 25 C -0.054 4.054 26 O -0.226 6.226 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.159 0.841 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.148 0.852 40 H 0.095 0.905 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.089 5.432 12.165 22.465 hybrid contribution -0.352 0.500 -1.262 1.402 sum -18.441 5.933 10.903 22.229 Atomic orbital electron populations 1.22018 0.98882 0.99912 1.00555 1.21914 0.92571 0.99504 1.01022 1.19433 0.95653 0.90652 0.85839 0.97995 1.21141 0.89345 1.43178 1.02800 0.90552 1.24896 0.94730 0.94301 0.98680 1.69956 1.10798 1.44512 1.27765 0.87272 0.82568 0.77991 0.83355 1.20861 1.21409 1.17041 1.60648 1.02796 1.33919 1.32662 1.20710 0.94458 0.93625 0.91146 0.89064 1.22500 1.01428 0.97773 1.01798 1.19735 0.91651 0.97085 0.96285 1.20785 1.00381 0.98936 0.90808 1.20421 0.91465 1.03085 0.98255 1.18838 0.93562 1.04575 0.83882 1.18772 0.82729 1.03841 0.94531 1.20253 0.94557 1.03585 0.94816 1.86372 1.19314 1.88521 1.28318 1.23621 1.00492 0.99510 0.81867 1.23556 0.80196 0.99311 1.02363 1.86293 1.22607 1.88453 1.25204 0.92111 0.94392 0.94553 0.92931 0.92204 0.92669 0.84107 0.92448 0.91731 0.92990 0.84751 0.85133 0.85232 0.90544 0.86473 0.86482 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 8.74 37.16 0.32 -2.55 16 2 C -0.11 -2.44 4.82 -26.73 -0.13 -2.56 16 3 C 0.19 4.34 1.60 -68.87 -0.11 4.23 16 4 H 0.00 0.06 5.69 -51.92 -0.30 -0.24 16 5 C -0.53 -14.18 9.02 -34.44 -0.31 -14.49 16 6 H 0.08 2.23 7.79 -52.49 -0.41 1.82 16 7 C 0.08 2.15 5.36 -17.82 -0.10 2.05 16 8 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 9 Si 0.86 20.78 25.76 -169.99 -4.38 16.40 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.25 -5.58 5.31 56.52 0.30 -5.28 16 13 N -0.67 -12.90 5.46 -102.17 -0.56 -13.46 16 14 C 0.11 1.81 1.78 -68.86 -0.12 1.69 16 15 H 0.09 1.52 5.08 -51.93 -0.26 1.26 16 16 C -0.18 -2.67 9.12 37.16 0.34 -2.33 16 17 C -0.05 -0.71 4.96 -104.63 -0.52 -1.22 16 18 C -0.09 -1.32 9.31 -39.59 -0.37 -1.68 16 19 C -0.11 -1.57 9.96 -39.43 -0.39 -1.96 16 20 C 0.04 0.51 6.49 -39.14 -0.25 0.25 16 21 C 0.05 0.66 6.49 -39.14 -0.25 0.40 16 22 C -0.11 -1.65 9.58 -39.43 -0.38 -2.03 16 23 O -0.31 -3.98 10.43 -32.86 -0.34 -4.33 16 24 C 0.02 0.18 7.28 37.40 0.27 0.45 16 25 C 0.02 0.18 7.25 37.40 0.27 0.45 16 26 O -0.31 -3.90 10.42 -32.87 -0.34 -4.25 16 27 H 0.06 1.07 5.70 -51.93 -0.30 0.77 16 28 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.21 4.67 -51.93 -0.24 0.96 16 31 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.34 6.56 7.04 -39.29 -0.28 6.28 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.07 7.31 -51.93 -0.38 0.69 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.13 1.88 7.13 -52.49 -0.37 1.50 16 38 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.13 1.75 8.03 -52.48 -0.42 1.33 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 335.39 15.07 5.05 5.05 Total: -1.00 -30.77 335.39 -7.94 -38.71 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.42 Total: 7.15 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: -1.73 Total: -19.30 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.22 Total: -39.43 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.69 Total: -8.57 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.38 Total: 16.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.77 -7.94 -38.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.458 kcal (2) G-P(sol) polarization free energy of solvation -30.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds