Wall clock time and date at job start Tue Mar 31 2020 06:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 H 1.08997 * 109.47553 * 56.04854 * 3 2 1 5 5 C 1.50701 * 109.47341 * 176.04852 * 3 2 1 6 6 H 1.08000 * 120.00784 * 119.99621 * 5 3 2 7 7 C 1.37882 * 119.99638 * 299.99891 * 5 3 2 8 8 N 1.31519 * 119.99931 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00141 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47350 * 59.99503 * 9 7 5 11 11 H 1.48493 * 109.47374 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46584 * 299.99702 * 9 7 5 13 13 N 1.46905 * 109.47084 * 296.04350 * 3 2 1 14 14 C 1.46900 * 111.00227 * 152.62779 * 13 3 2 15 15 H 1.08999 * 109.39991 * 328.17103 * 14 13 3 16 16 C 1.53072 * 109.43501 * 88.06177 * 14 13 3 17 17 C 1.53413 * 108.27782 * 168.33239 * 16 14 13 18 18 O 1.42820 * 108.38011 * 295.25131 * 17 16 14 19 19 C 1.35953 * 117.87296 * 49.10366 * 18 17 16 20 20 C 1.39126 * 118.43761 * 163.00544 * 19 18 17 21 21 C 1.37949 * 120.29490 * 179.79663 * 20 19 18 22 22 C 1.38716 * 119.89871 * 0.02562 * 21 20 19 23 23 O 1.35985 * 120.06740 * 180.11707 * 22 21 20 24 24 C 1.42903 * 116.99952 * 359.96417 * 23 22 21 25 25 C 1.38529 * 119.86582 * 0.08589 * 22 21 20 26 26 C 1.38353 * 121.78024 * 342.95069 * 19 18 17 27 27 H 1.09007 * 109.47047 * 176.17552 * 1 2 3 28 28 H 1.08999 * 109.47670 * 296.16919 * 1 2 3 29 29 H 1.09000 * 109.47368 * 56.17810 * 1 2 3 30 30 H 1.08996 * 109.47658 * 239.99763 * 2 1 3 31 31 H 1.09004 * 109.46787 * 119.99568 * 2 1 3 32 32 H 0.96998 * 119.99923 * 179.97438 * 8 7 5 33 33 H 1.00902 * 110.99456 * 276.58237 * 13 3 2 34 34 H 1.09000 * 109.69854 * 48.64160 * 16 14 13 35 35 H 1.08993 * 109.70870 * 288.02962 * 16 14 13 36 36 H 1.09001 * 109.68396 * 54.97588 * 17 16 14 37 37 H 1.09004 * 109.67966 * 175.53343 * 17 16 14 38 38 H 1.08002 * 119.84830 * 359.77608 * 20 19 18 39 39 H 1.07996 * 120.04347 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.46853 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.47267 * 300.00832 * 24 23 22 42 42 H 1.09001 * 109.46402 * 60.01022 * 24 23 22 43 43 H 1.07998 * 119.86434 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6199 1.9764 0.8524 5 6 3.5437 1.4438 0.0979 6 1 4.1356 1.8931 -0.6858 7 6 4.1640 0.8712 1.1881 8 7 3.4432 0.3244 2.1427 9 14 6.0280 0.8733 1.3100 10 1 6.5225 2.2735 1.3102 11 1 6.4426 0.2022 2.5680 12 1 6.6007 0.1463 0.1485 13 7 1.6297 2.1068 -1.2444 14 6 1.4993 3.5569 -1.0488 15 1 1.1781 3.7569 -0.0266 16 6 2.8523 4.2282 -1.2981 17 6 2.6299 5.7440 -1.3777 18 8 1.8205 6.0209 -2.5214 19 6 0.6845 5.2927 -2.6875 20 6 -0.2852 5.7685 -3.5643 21 6 -1.4507 5.0582 -3.7650 22 6 -1.6578 3.8644 -3.0896 23 8 -2.8043 3.1602 -3.2867 24 6 -3.7534 3.7091 -4.2032 25 6 -0.6941 3.3906 -2.2145 26 6 0.4762 4.1032 -2.0122 27 1 -0.3633 -1.0254 -0.0686 28 1 -0.3634 0.4532 0.9223 29 1 -0.3634 0.5720 -0.8537 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.8796 -0.0787 2.9095 33 1 2.2727 1.8994 -1.9938 34 1 3.2733 3.8687 -2.2370 35 1 3.5328 3.9993 -0.4780 36 1 2.1224 6.0885 -0.4767 37 1 3.5898 6.2512 -1.4759 38 1 -0.1250 6.6983 -4.0899 39 1 -2.2005 5.4311 -4.4469 40 1 -4.6196 3.0505 -4.2672 41 1 -4.0696 4.6919 -3.8537 42 1 -3.2950 3.8037 -5.1876 43 1 -0.8552 2.4610 -1.6891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054183815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:09 Heat of formation + Delta-G solvation = -55.715280 kcal Electronic energy + Delta-G solvation = -24056.520868 eV Core-core repulsion = 20680.948912 eV Total energy + Delta-G solvation = -3375.571956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.53752 -39.03351 -36.61380 -36.06632 -33.64754 -31.65076 -30.41912 -30.01690 -29.16898 -27.04143 -26.35551 -24.11010 -22.94165 -22.73599 -21.75123 -19.85987 -19.45756 -17.55366 -17.40477 -16.53358 -16.52921 -15.61856 -15.15421 -14.96426 -14.75330 -14.31733 -13.94342 -13.54171 -13.46467 -13.03262 -12.88195 -12.74974 -12.69740 -12.21194 -11.85368 -11.78261 -11.45183 -11.29502 -11.15332 -11.09129 -10.85871 -10.73614 -10.68820 -10.37303 -10.18730 -9.96624 -9.60064 -9.38657 -9.07771 -8.53711 -8.41377 -7.44754 -7.35509 -6.04131 -4.16910 1.53599 1.73903 3.24023 3.30439 3.32381 3.42915 3.62512 4.00218 4.34992 4.92242 4.95623 5.09399 5.12853 5.13407 5.18649 5.22620 5.27791 5.42613 5.44497 5.53147 5.75270 5.85692 5.95877 5.99004 6.19230 6.29976 6.39450 6.43721 6.50710 6.58229 6.59626 6.71410 6.83456 6.93736 7.10634 7.20193 7.41114 7.52360 7.55965 7.74233 7.79660 8.05094 8.08215 8.27564 8.58553 8.94913 9.50664 10.96208 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.004991 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.084994 B = 5608.738423 C = 6942.416343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.546 4.546 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.676 5.676 14 C 0.139 3.861 15 H 0.085 0.915 16 C -0.181 4.181 17 C 0.063 3.937 18 O -0.323 6.323 19 C 0.097 3.903 20 C -0.124 4.124 21 C -0.181 4.181 22 C 0.081 3.919 23 O -0.318 6.318 24 C 0.030 3.970 25 C -0.082 4.082 26 C -0.102 4.102 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.050 0.950 30 H 0.031 0.969 31 H 0.090 0.910 32 H 0.262 0.738 33 H 0.333 0.667 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.774 9.114 -9.259 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.585 4.585 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.304 5.304 14 C 0.028 3.972 15 H 0.103 0.897 16 C -0.221 4.221 17 C -0.012 4.012 18 O -0.238 6.238 19 C 0.051 3.949 20 C -0.143 4.143 21 C -0.199 4.199 22 C 0.037 3.963 23 O -0.232 6.232 24 C -0.065 4.065 25 C -0.101 4.101 26 C -0.104 4.104 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.150 0.850 34 H 0.090 0.910 35 H 0.119 0.881 36 H 0.078 0.922 37 H 0.118 0.882 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.418 8.822 -8.985 15.724 hybrid contribution 2.030 0.276 0.149 2.054 sum -7.388 9.099 -8.836 14.678 Atomic orbital electron populations 1.21742 0.98996 0.98582 1.00380 1.21496 0.92087 0.99146 1.01708 1.19229 0.92822 0.91260 0.85839 0.94981 1.21846 0.92511 1.38202 1.05947 0.92605 1.24926 0.97807 0.94947 0.95706 1.69867 1.34994 1.37698 1.09566 0.86750 0.86206 0.78169 0.77398 1.20420 1.21287 1.20313 1.60883 1.54552 1.04656 1.10312 1.20211 0.90446 0.90130 0.96450 0.89695 1.23039 1.00250 0.94444 1.04320 1.22986 0.94245 0.97089 0.86930 1.85925 1.33042 1.59092 1.45755 1.18663 0.87035 0.91299 0.97865 1.20207 0.92250 1.00821 1.00973 1.20876 0.99064 0.96259 1.03739 1.18916 0.87452 0.91974 0.97950 1.86097 1.27059 1.48213 1.61814 1.22954 0.91679 0.99628 0.92273 1.20305 0.90867 1.00928 0.97999 1.19970 0.96707 0.93535 1.00155 0.95627 0.94566 0.93052 0.95062 0.89186 0.92800 0.84954 0.91011 0.88075 0.92162 0.88165 0.85647 0.85611 0.88703 0.93114 0.93063 0.83791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.84 37.15 0.37 -2.47 16 2 C -0.11 -2.46 5.44 -26.74 -0.15 -2.60 16 3 C 0.22 5.02 1.99 -68.86 -0.14 4.88 16 4 H 0.03 0.83 7.35 -51.93 -0.38 0.45 16 5 C -0.55 -13.70 7.32 -34.44 -0.25 -13.96 16 6 H 0.06 1.38 6.94 -52.49 -0.36 1.01 16 7 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.07 11.30 55.43 0.63 -23.44 16 9 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 N -0.68 -13.43 4.61 -102.09 -0.47 -13.90 16 14 C 0.14 2.51 2.61 -68.79 -0.18 2.33 16 15 H 0.09 1.64 7.34 -51.93 -0.38 1.26 16 16 C -0.18 -3.04 4.81 -26.48 -0.13 -3.16 16 17 C 0.06 0.91 7.03 37.37 0.26 1.17 16 18 O -0.32 -5.14 10.27 -19.59 -0.20 -5.34 16 19 C 0.10 1.56 6.47 -39.21 -0.25 1.31 16 20 C -0.12 -1.76 9.93 -39.36 -0.39 -2.15 16 21 C -0.18 -2.42 9.03 -39.51 -0.36 -2.77 16 22 C 0.08 1.24 6.68 -39.30 -0.26 0.98 16 23 O -0.32 -4.54 10.50 -19.69 -0.21 -4.74 16 24 C 0.03 0.28 9.81 101.05 0.99 1.27 16 25 C -0.08 -1.40 9.21 -39.38 -0.36 -1.76 16 26 C -0.10 -1.74 5.56 -104.45 -0.58 -2.32 16 27 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 1.00 6.57 -51.93 -0.34 0.66 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.34 5.98 -51.93 -0.31 2.03 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.33 6.74 7.90 -39.29 -0.31 6.43 16 34 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 35 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.13 1.31 6.31 -52.49 -0.33 0.98 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 42 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 43 H 0.14 2.61 6.65 -52.49 -0.35 2.26 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -27.34 338.94 -8.12 -35.45 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.43 Total: 9.07 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.52 Total: -17.54 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.16 Total: -37.35 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.41 Total: -10.08 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.34 -8.12 -35.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.263 kcal (2) G-P(sol) polarization free energy of solvation -27.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds