Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 H 1.08997 * 109.47553 * 56.04854 * 3 2 1 5 5 C 1.50701 * 109.47341 * 176.04852 * 3 2 1 6 6 H 1.08000 * 120.00784 * 119.99621 * 5 3 2 7 7 C 1.37882 * 119.99638 * 299.99891 * 5 3 2 8 8 N 1.31519 * 119.99931 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00141 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47350 * 59.99503 * 9 7 5 11 11 H 1.48493 * 109.47374 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46584 * 299.99702 * 9 7 5 13 13 N 1.46905 * 109.47084 * 296.04350 * 3 2 1 14 14 C 1.46900 * 111.00227 * 152.62779 * 13 3 2 15 15 H 1.08999 * 109.39991 * 328.17103 * 14 13 3 16 16 C 1.53072 * 109.43501 * 88.06177 * 14 13 3 17 17 C 1.53413 * 108.27782 * 168.33239 * 16 14 13 18 18 O 1.42820 * 108.38011 * 295.25131 * 17 16 14 19 19 C 1.35953 * 117.87296 * 49.10366 * 18 17 16 20 20 C 1.39126 * 118.43761 * 163.00544 * 19 18 17 21 21 C 1.37949 * 120.29490 * 179.79663 * 20 19 18 22 22 C 1.38716 * 119.89871 * 0.02562 * 21 20 19 23 23 O 1.35985 * 120.06740 * 180.11707 * 22 21 20 24 24 C 1.42903 * 116.99952 * 359.96417 * 23 22 21 25 25 C 1.38529 * 119.86582 * 0.08589 * 22 21 20 26 26 C 1.38353 * 121.78024 * 342.95069 * 19 18 17 27 27 H 1.09007 * 109.47047 * 176.17552 * 1 2 3 28 28 H 1.08999 * 109.47670 * 296.16919 * 1 2 3 29 29 H 1.09000 * 109.47368 * 56.17810 * 1 2 3 30 30 H 1.08996 * 109.47658 * 239.99763 * 2 1 3 31 31 H 1.09004 * 109.46787 * 119.99568 * 2 1 3 32 32 H 0.96998 * 119.99923 * 179.97438 * 8 7 5 33 33 H 1.00902 * 110.99456 * 276.58237 * 13 3 2 34 34 H 1.09000 * 109.69854 * 48.64160 * 16 14 13 35 35 H 1.08993 * 109.70870 * 288.02962 * 16 14 13 36 36 H 1.09001 * 109.68396 * 54.97588 * 17 16 14 37 37 H 1.09004 * 109.67966 * 175.53343 * 17 16 14 38 38 H 1.08002 * 119.84830 * 359.77608 * 20 19 18 39 39 H 1.07996 * 120.04347 * 180.02562 * 21 20 19 40 40 H 1.08997 * 109.46853 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.47267 * 300.00832 * 24 23 22 42 42 H 1.09001 * 109.46402 * 60.01022 * 24 23 22 43 43 H 1.07998 * 119.86434 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6199 1.9764 0.8524 5 6 3.5437 1.4438 0.0979 6 1 4.1356 1.8931 -0.6858 7 6 4.1640 0.8712 1.1881 8 7 3.4432 0.3244 2.1427 9 14 6.0280 0.8733 1.3100 10 1 6.5225 2.2735 1.3102 11 1 6.4426 0.2022 2.5680 12 1 6.6007 0.1463 0.1485 13 7 1.6297 2.1068 -1.2444 14 6 1.4993 3.5569 -1.0488 15 1 1.1781 3.7569 -0.0266 16 6 2.8523 4.2282 -1.2981 17 6 2.6299 5.7440 -1.3777 18 8 1.8205 6.0209 -2.5214 19 6 0.6845 5.2927 -2.6875 20 6 -0.2852 5.7685 -3.5643 21 6 -1.4507 5.0582 -3.7650 22 6 -1.6578 3.8644 -3.0896 23 8 -2.8043 3.1602 -3.2867 24 6 -3.7534 3.7091 -4.2032 25 6 -0.6941 3.3906 -2.2145 26 6 0.4762 4.1032 -2.0122 27 1 -0.3633 -1.0254 -0.0686 28 1 -0.3634 0.4532 0.9223 29 1 -0.3634 0.5720 -0.8537 30 1 1.8934 -0.5138 -0.8899 31 1 1.8932 -0.5138 0.8901 32 1 3.8796 -0.0787 2.9095 33 1 2.2727 1.8994 -1.9938 34 1 3.2733 3.8687 -2.2370 35 1 3.5328 3.9993 -0.4780 36 1 2.1224 6.0885 -0.4767 37 1 3.5898 6.2512 -1.4759 38 1 -0.1250 6.6983 -4.0899 39 1 -2.2005 5.4311 -4.4469 40 1 -4.6196 3.0505 -4.2672 41 1 -4.0696 4.6919 -3.8537 42 1 -3.2950 3.8037 -5.1876 43 1 -0.8552 2.4610 -1.6891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = -71.568268 kcal Electronic energy + Delta-G solvation = -24057.208305 eV Core-core repulsion = 20680.948912 eV Total energy + Delta-G solvation = -3376.259394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.75073 -40.13167 -38.24381 -37.21912 -35.31005 -33.53816 -31.71576 -31.33890 -30.46153 -28.19978 -27.89956 -25.56408 -24.40769 -24.17283 -23.08272 -21.52274 -20.91328 -18.76553 -18.65832 -18.31503 -17.69545 -16.88500 -16.55219 -16.22233 -16.09153 -15.72006 -15.57087 -14.93026 -14.83945 -14.49594 -14.29252 -14.03286 -13.88104 -13.55090 -13.28944 -13.18697 -12.99201 -12.95729 -12.77298 -12.57342 -12.45221 -12.24272 -12.01859 -11.89193 -11.70159 -11.48848 -11.23881 -11.04403 -10.89289 -10.43016 -9.77107 -9.06169 -8.60870 -8.02893 -6.23265 0.35348 0.55000 1.40483 1.42449 1.48554 2.39164 2.41917 2.54396 2.81000 3.18130 3.54276 3.80658 3.85559 3.96815 4.05393 4.18457 4.29970 4.41775 4.45470 4.49118 4.54101 4.64508 4.70047 4.74533 4.77491 4.79651 4.93358 5.00739 5.07265 5.12958 5.17802 5.20683 5.38651 5.46303 5.54612 5.60212 5.63586 5.71320 5.81483 6.11372 6.20108 6.39837 6.43015 6.65505 6.78874 7.01982 7.47592 8.94358 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.004991 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.084994 B = 5608.738423 C = 6942.416343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C 0.227 3.773 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.668 5.668 14 C 0.140 3.860 15 H 0.063 0.937 16 C -0.174 4.174 17 C 0.067 3.933 18 O -0.325 6.325 19 C 0.081 3.919 20 C -0.118 4.118 21 C -0.167 4.167 22 C 0.080 3.920 23 O -0.340 6.340 24 C 0.019 3.981 25 C -0.105 4.105 26 C -0.115 4.115 27 H 0.043 0.957 28 H 0.029 0.971 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.332 0.668 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.129 0.871 38 H 0.153 0.847 39 H 0.163 0.837 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.370 10.812 -11.350 18.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.017 0.983 5 C -0.589 4.589 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.296 5.296 14 C 0.030 3.970 15 H 0.081 0.919 16 C -0.213 4.213 17 C -0.008 4.008 18 O -0.240 6.240 19 C 0.036 3.964 20 C -0.136 4.136 21 C -0.186 4.186 22 C 0.035 3.965 23 O -0.255 6.255 24 C -0.076 4.076 25 C -0.124 4.124 26 C -0.117 4.117 27 H 0.062 0.938 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.027 10.535 -11.094 18.292 hybrid contribution 2.084 -0.231 0.737 2.222 sum -7.943 10.304 -10.357 16.629 Atomic orbital electron populations 1.21597 0.96756 0.99789 1.00300 1.21364 0.94079 0.98636 0.99984 1.18953 0.91894 0.91218 0.86101 0.98252 1.22132 0.93523 1.37466 1.05784 0.92381 1.25623 1.01694 0.94900 0.95589 1.70006 1.36433 1.38652 1.10035 0.85804 0.81536 0.78310 0.77102 1.19660 1.21452 1.20055 1.60786 1.53997 1.06145 1.08623 1.20131 0.91899 0.89034 0.95953 0.91909 1.22874 0.98705 0.96531 1.03179 1.23062 0.95509 0.95186 0.87061 1.85920 1.33057 1.58942 1.46104 1.18874 0.87811 0.91160 0.98577 1.20577 0.91621 1.01557 0.99862 1.21237 0.99386 0.94903 1.03067 1.18974 0.87479 0.92564 0.97441 1.86076 1.27250 1.49056 1.63080 1.23318 0.91316 1.00917 0.92009 1.20202 0.91996 1.00730 0.99431 1.19774 0.96506 0.94539 1.00837 0.93796 0.95186 0.92446 0.95470 0.92004 0.93055 0.85116 0.91333 0.89989 0.91659 0.85361 0.82960 0.81938 0.86760 0.91536 0.91645 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.26 9.84 71.98 0.71 -4.55 16 2 C -0.10 -4.90 5.44 30.59 0.17 -4.73 16 3 C 0.23 11.00 1.99 44.17 0.09 11.09 16 4 H 0.00 -0.02 7.35 -2.39 -0.02 -0.04 16 5 C -0.55 -28.32 7.32 25.60 0.19 -28.14 16 6 H 0.06 2.91 6.94 -2.91 -0.02 2.89 16 7 C 0.02 1.17 5.30 84.66 0.45 1.61 16 8 N -0.91 -51.25 11.30 21.45 0.24 -51.00 16 9 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 12 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 13 N -0.67 -27.56 4.61 -476.91 -2.20 -29.76 16 14 C 0.14 5.27 2.61 44.22 0.12 5.38 16 15 H 0.06 2.60 7.34 -2.39 -0.02 2.58 16 16 C -0.17 -5.87 4.81 30.76 0.15 -5.73 16 17 C 0.07 1.86 7.03 72.12 0.51 2.36 16 18 O -0.33 -9.73 10.27 -93.02 -0.96 -10.69 16 19 C 0.08 2.50 6.47 22.51 0.15 2.65 16 20 C -0.12 -2.98 9.93 22.41 0.22 -2.76 16 21 C -0.17 -3.93 9.03 22.32 0.20 -3.73 16 22 C 0.08 2.33 6.68 22.45 0.15 2.48 16 23 O -0.34 -9.14 10.50 -93.38 -0.98 -10.12 16 24 C 0.02 0.29 9.81 113.37 1.11 1.40 16 25 C -0.10 -3.59 9.21 22.40 0.21 -3.39 16 26 C -0.11 -3.95 5.56 -19.75 -0.11 -4.06 16 27 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 2.29 6.57 -2.39 -0.02 2.28 16 30 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 3.34 5.98 -2.38 -0.01 3.33 16 32 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 33 H 0.33 13.79 7.90 -89.69 -0.71 13.08 16 34 H 0.07 2.34 7.89 -2.39 -0.02 2.32 16 35 H 0.08 3.07 6.91 -2.39 -0.02 3.05 16 36 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.13 2.82 8.14 -2.38 -0.02 2.80 16 38 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.16 2.57 6.31 -2.91 -0.02 2.55 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 42 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 43 H 0.12 4.64 6.65 -2.91 -0.02 4.62 16 Total: -1.00 -60.22 338.94 2.74 -57.48 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 0.31 Total: 29.90 kcal Atomic # 6 Polarization: -34.40 SS G_CDS: 4.30 Total: -30.11 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -1.95 Total: -80.76 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -1.94 Total: -20.80 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -60.22 2.74 -57.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.084 kcal (2) G-P(sol) polarization free energy of solvation -60.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds