Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47380 * 2 1 4 4 H 1.08993 * 109.47345 * 305.62074 * 3 2 1 5 5 C 1.50704 * 109.47088 * 185.61906 * 3 2 1 6 6 H 1.08001 * 119.99749 * 239.99662 * 5 3 2 7 7 C 1.37876 * 119.99653 * 60.00448 * 5 3 2 8 8 N 1.31510 * 120.00201 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99767 * 180.27513 * 7 5 3 10 10 H 1.48496 * 109.47363 * 179.72263 * 9 7 5 11 11 H 1.48505 * 109.46847 * 299.72287 * 9 7 5 12 12 H 1.48503 * 109.47385 * 59.71864 * 9 7 5 13 13 N 1.46901 * 109.47145 * 65.62073 * 3 2 1 14 14 C 1.46894 * 111.00302 * 204.18675 * 13 3 2 15 15 H 1.08999 * 109.43280 * 325.96834 * 14 13 3 16 16 C 1.53070 * 109.43482 * 85.87411 * 14 13 3 17 17 C 1.53410 * 108.29009 * 168.28066 * 16 14 13 18 18 O 1.42821 * 108.36247 * 295.23788 * 17 16 14 19 19 C 1.35947 * 117.85970 * 49.16084 * 18 17 16 20 20 C 1.39135 * 118.43356 * 162.96957 * 19 18 17 21 21 C 1.37943 * 120.29609 * 179.81494 * 20 19 18 22 22 C 1.38719 * 119.89741 * 359.97438 * 21 20 19 23 23 O 1.35985 * 120.06720 * 180.09821 * 22 21 20 24 24 C 1.42900 * 117.00104 * 0.02562 * 23 22 21 25 25 C 1.38531 * 119.86538 * 0.08107 * 22 21 20 26 26 C 1.38345 * 121.78720 * 342.91519 * 19 18 17 27 27 H 1.09008 * 109.47479 * 174.29713 * 1 2 3 28 28 H 1.08997 * 109.47164 * 294.30178 * 1 2 3 29 29 H 1.09008 * 109.47000 * 54.29987 * 1 2 3 30 30 H 1.09003 * 109.47287 * 240.00023 * 2 1 3 31 31 H 1.09000 * 109.46966 * 120.00396 * 2 1 3 32 32 H 0.97005 * 120.00244 * 180.02562 * 8 7 5 33 33 H 1.00903 * 111.00030 * 328.14726 * 13 3 2 34 34 H 1.09004 * 109.70287 * 287.98435 * 16 14 13 35 35 H 1.09005 * 109.69857 * 48.58209 * 16 14 13 36 36 H 1.09000 * 109.68490 * 54.95915 * 17 16 14 37 37 H 1.08999 * 109.68362 * 175.52093 * 17 16 14 38 38 H 1.08001 * 119.85165 * 359.79192 * 20 19 18 39 39 H 1.08000 * 120.05187 * 179.97438 * 21 20 19 40 40 H 1.09007 * 109.47028 * 59.99166 * 24 23 22 41 41 H 1.08991 * 109.47339 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.47188 * 299.99603 * 24 23 22 43 43 H 1.07999 * 119.85893 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5969 1.9845 -0.8353 5 6 3.5406 1.4446 -0.1391 6 1 4.1538 1.8864 0.6324 7 6 4.1306 0.8827 -1.2514 8 7 3.3839 0.3445 -2.1907 9 14 5.9909 0.8786 -1.4203 10 1 6.3710 0.2145 -2.6929 11 1 6.4908 2.2770 -1.4230 12 1 6.5900 0.1411 -0.2789 13 7 1.6643 2.0947 1.2615 14 6 1.6026 3.5536 1.1019 15 1 2.3623 3.8728 0.3884 16 6 0.2182 3.9512 0.5837 17 6 0.0778 5.4740 0.7051 18 8 0.1091 5.8197 2.0905 19 6 1.1087 5.3013 2.8522 20 6 1.3750 5.8889 4.0849 21 6 2.3782 5.3915 4.8907 22 6 3.1250 4.3004 4.4711 23 8 4.1134 3.8061 5.2635 24 6 4.3283 4.4591 6.5163 25 6 2.8617 3.7152 3.2434 26 6 1.8560 4.2152 2.4329 27 1 -0.3634 -1.0226 -0.1021 28 1 -0.3633 0.4229 0.9366 29 1 -0.3633 0.5997 -0.8346 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7990 -0.0512 -2.9731 33 1 0.7896 1.7317 1.6098 34 1 0.1177 3.6550 -0.4605 35 1 -0.5519 3.4624 1.1805 36 1 0.9032 5.9614 0.1862 37 1 -0.8693 5.7913 0.2688 38 1 0.7940 6.7383 4.4123 39 1 2.5818 5.8509 5.8466 40 1 3.4187 4.4056 7.1146 41 1 5.1422 3.9664 7.0480 42 1 4.5875 5.5034 6.3419 43 1 3.4435 2.8660 2.9167 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054183816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = -70.602633 kcal Electronic energy + Delta-G solvation = -24038.879092 eV Core-core repulsion = 20662.661571 eV Total energy + Delta-G solvation = -3376.217521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77606 -40.16058 -38.34373 -37.24299 -35.36749 -33.64687 -31.53839 -31.43698 -30.46721 -28.36998 -27.93038 -25.63183 -24.53395 -24.13917 -23.14486 -21.52995 -20.92376 -18.74316 -18.56581 -18.27570 -17.70536 -16.86913 -16.58406 -16.32449 -16.16833 -15.84490 -15.77414 -14.97896 -14.75027 -14.47407 -14.36938 -14.04064 -13.87626 -13.76545 -13.50697 -13.30592 -13.07356 -12.81312 -12.76347 -12.57250 -12.47906 -12.24545 -11.98094 -11.94775 -11.73378 -11.54189 -11.30545 -11.12141 -10.95079 -10.43673 -9.78939 -8.99312 -8.62743 -8.07176 -6.18067 0.34066 0.53224 1.39626 1.40755 1.48512 2.36643 2.42824 2.53330 2.79735 3.17835 3.51192 3.74094 3.81533 3.91859 4.02291 4.14510 4.27569 4.38893 4.43767 4.46958 4.49770 4.57155 4.61329 4.65196 4.70674 4.73866 4.76850 4.92608 5.00202 5.06291 5.13313 5.15918 5.24290 5.35857 5.40492 5.57313 5.59957 5.69264 5.79262 5.89136 6.36258 6.40600 6.49901 6.64227 6.94562 6.96506 7.50577 8.95372 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.012896 B = 0.005663 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.746083 B = 4943.151122 C = 6131.220363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.231 3.769 4 H -0.022 1.022 5 C -0.511 4.511 6 H 0.044 0.956 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.947 3.053 10 H -0.281 1.281 11 H -0.277 1.277 12 H -0.277 1.277 13 N -0.675 5.675 14 C 0.136 3.864 15 H 0.064 0.936 16 C -0.178 4.178 17 C 0.068 3.932 18 O -0.322 6.322 19 C 0.082 3.918 20 C -0.116 4.116 21 C -0.167 4.167 22 C 0.079 3.921 23 O -0.344 6.344 24 C 0.019 3.981 25 C -0.106 4.106 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.329 0.671 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.067 0.933 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.819 11.135 12.648 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.123 3.877 4 H -0.004 1.004 5 C -0.550 4.550 6 H 0.063 0.937 7 C -0.183 4.183 8 N -0.556 5.556 9 Si 0.774 3.226 10 H -0.207 1.207 11 H -0.202 1.202 12 H -0.202 1.202 13 N -0.305 5.305 14 C 0.026 3.974 15 H 0.082 0.918 16 C -0.217 4.217 17 C -0.007 4.007 18 O -0.237 6.237 19 C 0.037 3.963 20 C -0.134 4.134 21 C -0.185 4.185 22 C 0.035 3.965 23 O -0.259 6.259 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.116 4.116 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.148 0.852 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.154 0.846 38 H 0.174 0.826 39 H 0.182 0.818 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.085 0.915 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.167 10.975 12.733 17.587 hybrid contribution 0.530 -0.414 -1.118 1.305 sum -4.637 10.561 11.615 16.369 Atomic orbital electron populations 1.21736 0.96189 1.01109 1.00464 1.21590 0.94279 0.99047 1.01078 1.18901 0.93700 0.90524 0.84557 1.00408 1.21423 0.92984 1.36604 1.03963 0.93739 1.25563 1.01704 0.95400 0.95670 1.69968 1.36026 1.39788 1.09821 0.85782 0.81529 0.78119 0.77194 1.20663 1.20226 1.20235 1.60564 1.36362 1.02040 1.31544 1.20160 0.95910 0.89158 0.92191 0.91842 1.22886 0.97806 0.98063 1.02961 1.23049 1.04680 0.93662 0.79328 1.85927 1.46490 1.69358 1.21904 1.18815 0.90541 0.93679 0.93228 1.20595 0.99105 1.01354 0.92338 1.21244 0.97630 0.97390 1.02248 1.18990 0.90905 0.95059 0.91572 1.86088 1.51081 1.57088 1.31602 1.23325 1.03205 0.98721 0.82305 1.20191 0.98913 1.00801 0.92654 1.19743 0.97772 0.96386 0.97716 0.92604 0.92676 0.94051 0.91253 0.94930 0.93051 0.85231 0.90241 0.90317 0.91913 0.84553 0.82558 0.81779 0.91394 0.86896 0.91486 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.64 71.98 0.69 -4.41 16 2 C -0.12 -5.71 5.37 30.59 0.16 -5.55 16 3 C 0.23 11.44 1.85 44.17 0.08 11.52 16 4 H -0.02 -1.16 7.33 -2.39 -0.02 -1.18 16 5 C -0.51 -28.66 8.45 25.60 0.22 -28.44 16 6 H 0.04 2.59 7.81 -2.91 -0.02 2.56 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.92 -52.42 11.29 21.45 0.24 -52.18 16 9 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 N -0.67 -28.71 5.25 -476.93 -2.50 -31.22 16 14 C 0.14 5.25 2.40 44.22 0.11 5.36 16 15 H 0.06 2.84 7.59 -2.39 -0.02 2.82 16 16 C -0.18 -5.49 5.46 30.75 0.17 -5.32 16 17 C 0.07 1.74 7.03 72.12 0.51 2.25 16 18 O -0.32 -9.24 10.27 -92.96 -0.95 -10.20 16 19 C 0.08 2.57 6.47 22.51 0.15 2.72 16 20 C -0.12 -2.97 9.93 22.42 0.22 -2.75 16 21 C -0.17 -4.13 9.03 22.31 0.20 -3.93 16 22 C 0.08 2.52 6.68 22.45 0.15 2.67 16 23 O -0.34 -10.33 10.50 -93.38 -0.98 -11.31 16 24 C 0.02 0.33 9.81 113.37 1.11 1.44 16 25 C -0.11 -4.05 9.20 22.40 0.21 -3.84 16 26 C -0.11 -4.14 5.56 -19.75 -0.11 -4.25 16 27 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 28 H 0.05 1.81 6.65 -2.39 -0.02 1.80 16 29 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.07 3.71 5.94 -2.39 -0.01 3.70 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 33 H 0.33 12.83 6.18 -89.69 -0.55 12.28 16 34 H 0.08 2.52 7.70 -2.38 -0.02 2.50 16 35 H 0.08 2.33 7.90 -2.38 -0.02 2.31 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.14 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.16 3.07 8.06 -2.91 -0.02 3.04 16 39 H 0.16 2.76 6.31 -2.91 -0.02 2.74 16 40 H 0.07 0.96 7.67 -2.38 -0.02 0.95 16 41 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 0.96 7.66 -2.39 -0.02 0.94 16 43 H 0.11 5.01 7.70 -2.91 -0.02 4.99 16 Total: -1.00 -65.08 342.01 2.60 -62.49 By element: Atomic # 1 Polarization: 26.19 SS G_CDS: 0.45 Total: 26.65 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.31 Total: -31.24 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -2.26 Total: -83.39 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.94 Total: -21.51 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -65.08 2.60 -62.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054183816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.117 kcal (2) G-P(sol) polarization free energy of solvation -65.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds