Wall clock time and date at job start Tue Mar 31 2020 06:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39007 * 119.99879 * 89.99973 * 4 3 2 7 7 C 1.39236 * 119.92809 * 359.72255 * 6 4 3 8 8 C 1.37110 * 120.07311 * 179.76599 * 7 6 4 9 9 C 1.39865 * 119.92350 * 0.50627 * 8 7 6 10 10 C 1.47376 * 120.07300 * 179.72079 * 9 8 7 11 11 O 1.21516 * 120.00176 * 180.02562 * 10 9 8 12 12 O 1.34765 * 120.00093 * 0.02562 * 10 9 8 13 13 C 1.45196 * 117.00301 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47345 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47069 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00128 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99937 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99925 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47175 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47349 * 120.00435 * 19 17 15 22 22 H 1.48505 * 109.47164 * 240.00436 * 19 17 15 23 23 C 1.39851 * 119.85104 * 359.74542 * 9 8 7 24 24 C 1.37105 * 119.92835 * 359.97438 * 23 9 8 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 28 28 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 29 29 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 33 33 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 34 34 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 35 35 H 1.07996 * 119.95967 * 359.97438 * 7 6 4 36 36 H 1.07997 * 120.03961 * 180.22938 * 8 7 6 37 37 H 1.09001 * 109.47335 * 300.00103 * 13 12 10 38 38 H 1.09005 * 109.47117 * 59.99968 * 13 12 10 39 39 H 1.08998 * 109.47014 * 299.99801 * 14 13 12 40 40 H 1.08998 * 109.47070 * 60.00325 * 14 13 12 41 41 H 0.96993 * 120.00037 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.03417 * 179.97438 * 23 9 8 43 43 H 1.08003 * 119.96537 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1995 1.4426 -1.2048 7 6 3.5013 1.4370 -2.4094 8 6 4.1833 1.4420 -3.5988 9 6 5.5820 1.4420 -3.6012 10 6 6.3183 1.4411 -4.8778 11 8 7.5335 1.4407 -4.8783 12 8 5.6441 1.4408 -6.0446 13 6 6.4344 1.4405 -7.2627 14 6 5.5019 1.4395 -8.4756 15 6 6.3222 1.4399 -9.7398 16 1 7.4008 1.4403 -9.6837 17 6 5.6957 1.4386 -10.9681 18 7 4.3824 1.4376 -11.0365 19 14 6.7125 1.4383 -12.5351 20 1 8.1564 1.4389 -12.1883 21 1 6.3956 0.2251 -13.3307 22 1 6.3939 2.6501 -13.3322 23 6 6.2801 1.4424 -2.3894 24 6 5.5920 1.4432 -1.2035 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 4.4198 0.4147 1.5823 33 1 5.1903 1.9563 1.1372 34 1 3.6492 1.9562 2.0277 35 1 2.4214 1.4321 -2.4068 36 1 3.6412 1.4413 -4.5329 37 1 7.0632 2.3305 -7.2880 38 1 7.0632 0.5505 -7.2876 39 1 4.8735 0.5493 -8.4501 40 1 4.8728 2.3293 -8.4510 41 1 3.9417 1.4370 -11.9005 42 1 7.3601 1.4420 -2.3877 43 1 6.1305 1.4431 -0.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058390016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:44 Heat of formation + Delta-G solvation = -70.590508 kcal Electronic energy + Delta-G solvation = -22134.208000 eV Core-core repulsion = 18757.991005 eV Total energy + Delta-G solvation = -3376.216995 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.25194 -39.30011 -36.93390 -35.80035 -33.81885 -33.27905 -31.23388 -30.66161 -29.80000 -27.88760 -25.90795 -24.78483 -22.92770 -22.25570 -21.65338 -20.80450 -20.07944 -18.06823 -17.20372 -16.31332 -16.21991 -15.73312 -15.68731 -15.24628 -15.10531 -14.58104 -14.41098 -14.06492 -13.67656 -13.43384 -13.29881 -13.12941 -12.60206 -12.57011 -12.34220 -12.32268 -12.13952 -12.00113 -11.73576 -11.17885 -11.13633 -10.99030 -10.82237 -10.70360 -10.62753 -10.11549 -10.02014 -9.54715 -9.54291 -9.23280 -9.08983 -8.40640 -7.55354 -6.06730 -4.10401 0.99953 1.42345 2.73630 2.94889 3.30282 3.34132 3.38789 3.45918 3.95702 4.41830 4.43253 4.52845 4.62647 4.80317 4.84554 4.92705 5.01304 5.08445 5.17224 5.25938 5.29973 5.30761 5.38053 5.39377 5.48977 5.52028 5.63619 5.72365 5.87618 6.00722 6.07861 6.17281 6.19018 6.30687 6.50684 6.64362 6.72457 6.92659 7.11239 7.20251 7.62428 7.68661 7.92245 8.26957 8.41183 8.95512 9.53694 11.04967 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.002611 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.175923 B =10719.783333 C =11738.772100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.119 3.881 4 N -0.626 5.626 5 C 0.090 3.910 6 C 0.244 3.756 7 C -0.213 4.213 8 C -0.010 4.010 9 C -0.182 4.182 10 C 0.505 3.495 11 O -0.526 6.526 12 O -0.355 6.355 13 C 0.076 3.924 14 C 0.024 3.976 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.891 5.891 19 Si 0.899 3.101 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.007 4.007 24 C -0.215 4.215 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.129 0.871 36 H 0.141 0.859 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.134 0.866 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 -0.554 27.363 28.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.004 4.004 4 N -0.335 5.335 5 C -0.053 4.053 6 C 0.140 3.860 7 C -0.235 4.235 8 C -0.029 4.029 9 C -0.185 4.185 10 C 0.351 3.649 11 O -0.418 6.418 12 O -0.272 6.272 13 C 0.004 3.996 14 C -0.013 4.013 15 C -0.562 4.562 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.026 4.026 24 C -0.237 4.237 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.384 -0.543 27.372 28.112 hybrid contribution 0.593 -0.056 -0.912 1.090 sum -5.791 -0.599 26.460 27.093 Atomic orbital electron populations 1.21710 0.95085 1.02144 1.01955 1.21986 0.96122 0.97423 1.02875 1.21602 0.78951 0.96830 1.03021 1.46434 1.05025 1.78711 1.03290 1.21699 0.97402 1.01377 0.84863 1.18068 0.91289 0.90834 0.85806 1.20543 0.99964 1.12338 0.90684 1.21201 0.92900 0.90298 0.98452 1.19016 0.93599 1.15097 0.90794 1.21055 0.86011 0.72779 0.85065 1.90773 1.15068 1.47352 1.88606 1.86564 1.42394 1.82995 1.15212 1.23605 0.94998 1.00895 0.80139 1.19168 0.94818 0.98824 0.88470 1.21039 0.93182 1.51796 0.90203 0.92205 1.24985 0.95000 0.94952 0.99285 1.69981 1.07808 1.50065 1.25082 0.86424 0.80411 0.77656 0.82875 1.19590 1.20863 1.20856 1.20863 1.00312 0.91247 0.90182 1.20441 0.91857 1.12965 0.98466 0.92326 0.92373 0.92734 0.91264 0.91921 0.90190 0.90738 0.93202 0.91004 0.91471 0.85354 0.84148 0.92382 0.92392 0.95363 0.95364 0.92816 0.84776 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.43 16 2 C -0.15 -0.91 6.26 -26.73 -0.17 -1.08 16 3 C 0.12 0.76 5.18 -4.04 -0.02 0.73 16 4 N -0.63 -4.98 2.99 -179.62 -0.54 -5.52 16 5 C 0.09 0.50 10.22 59.85 0.61 1.12 16 6 C 0.24 2.57 6.55 -83.86 -0.55 2.02 16 7 C -0.21 -2.41 9.16 -39.62 -0.36 -2.78 16 8 C -0.01 -0.13 9.58 -39.38 -0.38 -0.51 16 9 C -0.18 -2.86 5.88 -104.97 -0.62 -3.48 16 10 C 0.50 9.91 7.89 34.45 0.27 10.18 16 11 O -0.53 -11.41 16.13 -19.28 -0.31 -11.72 16 12 O -0.36 -7.59 9.46 -40.67 -0.38 -7.98 16 13 C 0.08 1.78 5.41 37.16 0.20 1.98 16 14 C 0.02 0.65 5.35 -27.88 -0.15 0.50 16 15 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 16 H 0.06 1.67 7.74 -52.48 -0.41 1.26 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 19 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 C -0.01 -0.09 9.56 -39.39 -0.38 -0.47 16 24 C -0.22 -2.34 9.16 -39.62 -0.36 -2.71 16 25 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.52 6.18 -51.93 -0.32 0.20 16 31 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.39 6.17 -51.93 -0.32 0.07 16 34 H 0.07 0.27 7.89 -51.93 -0.41 -0.14 16 35 H 0.13 1.20 6.12 -52.49 -0.32 0.88 16 36 H 0.14 1.94 7.60 -52.49 -0.40 1.54 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.13 1.75 7.64 -52.48 -0.40 1.35 16 43 H 0.13 1.08 6.11 -52.48 -0.32 0.76 16 LS Contribution 360.47 15.07 5.43 5.43 Total: -1.00 -32.72 360.47 -8.70 -41.42 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -6.67 Total: -3.71 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -1.94 Total: -8.65 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.20 Total: -31.50 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.70 Total: -19.70 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.72 -8.70 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.169 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds