Wall clock time and date at job start Tue Mar 31 2020 06:30:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99661 * 269.99401 * 4 3 2 6 6 C 1.39007 * 119.99879 * 89.99973 * 4 3 2 7 7 C 1.39236 * 119.92809 * 359.72255 * 6 4 3 8 8 C 1.37110 * 120.07311 * 179.76599 * 7 6 4 9 9 C 1.39865 * 119.92350 * 0.50627 * 8 7 6 10 10 C 1.47376 * 120.07300 * 179.72079 * 9 8 7 11 11 O 1.21516 * 120.00176 * 180.02562 * 10 9 8 12 12 O 1.34765 * 120.00093 * 0.02562 * 10 9 8 13 13 C 1.45196 * 117.00301 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47345 * 179.97438 * 13 12 10 15 15 C 1.50700 * 109.47069 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00128 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99970 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99937 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99925 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47175 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47349 * 120.00435 * 19 17 15 22 22 H 1.48505 * 109.47164 * 240.00436 * 19 17 15 23 23 C 1.39851 * 119.85104 * 359.74542 * 9 8 7 24 24 C 1.37105 * 119.92835 * 359.97438 * 23 9 8 25 25 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 28 28 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 29 29 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09003 * 109.47033 * 90.00622 * 5 4 3 33 33 H 1.09000 * 109.47241 * 210.00440 * 5 4 3 34 34 H 1.09000 * 109.47127 * 330.00198 * 5 4 3 35 35 H 1.07996 * 119.95967 * 359.97438 * 7 6 4 36 36 H 1.07997 * 120.03961 * 180.22938 * 8 7 6 37 37 H 1.09001 * 109.47335 * 300.00103 * 13 12 10 38 38 H 1.09005 * 109.47117 * 59.99968 * 13 12 10 39 39 H 1.08998 * 109.47014 * 299.99801 * 14 13 12 40 40 H 1.08998 * 109.47070 * 60.00325 * 14 13 12 41 41 H 0.96993 * 120.00037 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.03417 * 179.97438 * 23 9 8 43 43 H 1.08003 * 119.96537 * 179.97438 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4424 1.2678 6 6 4.1995 1.4426 -1.2048 7 6 3.5013 1.4370 -2.4094 8 6 4.1833 1.4420 -3.5988 9 6 5.5820 1.4420 -3.6012 10 6 6.3183 1.4411 -4.8778 11 8 7.5335 1.4407 -4.8783 12 8 5.6441 1.4408 -6.0446 13 6 6.4344 1.4405 -7.2627 14 6 5.5019 1.4395 -8.4756 15 6 6.3222 1.4399 -9.7398 16 1 7.4008 1.4403 -9.6837 17 6 5.6957 1.4386 -10.9681 18 7 4.3824 1.4376 -11.0365 19 14 6.7125 1.4383 -12.5351 20 1 8.1564 1.4389 -12.1883 21 1 6.3956 0.2251 -13.3307 22 1 6.3939 2.6501 -13.3322 23 6 6.2801 1.4424 -2.3894 24 6 5.5920 1.4432 -1.2035 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 4.4198 0.4147 1.5823 33 1 5.1903 1.9563 1.1372 34 1 3.6492 1.9562 2.0277 35 1 2.4214 1.4321 -2.4068 36 1 3.6412 1.4413 -4.5329 37 1 7.0632 2.3305 -7.2880 38 1 7.0632 0.5505 -7.2876 39 1 4.8735 0.5493 -8.4501 40 1 4.8728 2.3293 -8.4510 41 1 3.9417 1.4370 -11.9005 42 1 7.3601 1.4420 -2.3877 43 1 6.1305 1.4431 -0.2673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058390016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:43 Heat of formation + Delta-G solvation = -87.561230 kcal Electronic energy + Delta-G solvation = -22134.943906 eV Core-core repulsion = 18757.991005 eV Total energy + Delta-G solvation = -3376.952900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.52736 -40.47390 -37.92757 -37.32394 -35.44633 -34.40184 -32.45277 -32.14494 -31.07237 -28.42146 -27.35448 -26.23413 -23.98147 -23.21533 -22.91105 -22.26865 -21.20653 -19.26058 -18.62689 -18.03896 -17.49638 -17.45236 -16.74147 -16.51090 -15.97471 -15.69696 -15.33468 -15.09109 -14.89573 -14.61985 -14.51860 -14.37015 -13.90649 -13.55810 -13.44647 -13.11171 -13.09646 -12.96989 -12.78323 -12.64141 -12.60318 -12.57540 -12.21935 -11.88395 -11.78300 -11.52925 -11.50352 -11.47078 -11.31875 -10.87172 -10.61978 -10.06325 -8.35772 -8.27373 -6.40543 -0.12993 0.47072 1.40668 1.41671 1.55303 1.60689 1.82625 2.09102 2.40800 2.87648 3.06780 3.74429 3.83413 3.88706 4.03285 4.10639 4.22011 4.24873 4.28430 4.36327 4.41526 4.47075 4.59477 4.64892 4.68650 4.69888 4.75088 4.91936 4.95450 5.06252 5.15774 5.16502 5.21884 5.25653 5.33847 5.44016 5.46090 5.48674 5.58146 5.69198 5.74632 6.06593 6.24801 6.39441 6.71961 6.80871 7.29014 8.85718 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.002611 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.175923 B =10719.783333 C =11738.772100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.113 3.887 4 N -0.618 5.618 5 C 0.080 3.920 6 C 0.256 3.744 7 C -0.214 4.214 8 C -0.015 4.015 9 C -0.217 4.217 10 C 0.502 3.498 11 O -0.556 6.556 12 O -0.363 6.363 13 C 0.091 3.909 14 C 0.033 3.967 15 C -0.550 4.550 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.927 5.927 19 Si 0.975 3.025 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.008 4.008 24 C -0.210 4.210 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.066 0.934 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.130 0.870 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.007 0.993 40 H 0.007 0.993 41 H 0.268 0.732 42 H 0.133 0.867 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.834 -0.383 29.572 30.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.179 4.179 3 C -0.010 4.010 4 N -0.324 5.324 5 C -0.062 4.062 6 C 0.148 3.852 7 C -0.236 4.236 8 C -0.034 4.034 9 C -0.220 4.220 10 C 0.350 3.650 11 O -0.449 6.449 12 O -0.279 6.279 13 C 0.018 3.982 14 C -0.005 4.005 15 C -0.588 4.588 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.566 5.566 19 Si 0.799 3.201 20 H -0.187 1.187 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.027 4.027 24 C -0.232 4.232 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.025 0.975 40 H 0.025 0.975 41 H 0.077 0.923 42 H 0.151 0.849 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.752 -0.374 29.643 30.404 hybrid contribution 0.545 -0.118 -1.331 1.443 sum -6.207 -0.493 28.312 28.989 Atomic orbital electron populations 1.21697 0.94284 1.02229 1.02526 1.21916 0.96785 0.97108 1.02059 1.21804 0.77863 0.97083 1.04204 1.46760 1.05950 1.76469 1.03207 1.21961 0.97902 1.02350 0.83997 1.18204 0.91442 0.88875 0.86654 1.20687 1.00903 1.11840 0.90132 1.21156 0.92208 0.90817 0.99223 1.18905 0.94259 1.19504 0.89360 1.21805 0.86066 0.71717 0.85364 1.90736 1.16187 1.49195 1.88787 1.86556 1.42375 1.83607 1.15409 1.23156 0.94024 1.00795 0.80272 1.18972 0.94729 0.96688 0.90068 1.21402 0.93626 1.52465 0.91280 0.91794 1.25981 0.96261 0.94031 1.03059 1.70099 1.09635 1.50429 1.26422 0.85248 0.78822 0.78099 0.77958 1.18713 1.19929 1.19906 1.20922 1.00373 0.91209 0.90189 1.20678 0.92128 1.11863 0.98564 0.92470 0.92593 0.91457 0.93184 0.91621 0.90314 0.88316 0.92395 0.90455 0.89213 0.83422 0.85170 0.92405 0.92441 0.97478 0.97461 0.92284 0.84947 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.14 -1.42 6.26 30.60 0.19 -1.23 16 3 C 0.11 1.06 5.18 86.38 0.45 1.51 16 4 N -0.62 -7.74 2.99 -722.19 -2.16 -9.89 16 5 C 0.08 0.57 10.22 127.77 1.31 1.88 16 6 C 0.26 4.80 6.55 38.49 0.25 5.05 16 7 C -0.21 -4.59 9.16 22.24 0.20 -4.39 16 8 C -0.01 -0.42 9.58 22.40 0.21 -0.20 16 9 C -0.22 -7.03 5.88 -20.09 -0.12 -7.15 16 10 C 0.50 20.64 7.89 70.23 0.55 21.20 16 11 O -0.56 -25.10 16.13 19.78 0.32 -24.78 16 12 O -0.36 -16.37 9.46 -56.76 -0.54 -16.91 16 13 C 0.09 4.44 5.41 71.98 0.39 4.83 16 14 C 0.03 1.84 5.35 29.85 0.16 2.00 16 15 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 16 H 0.06 3.62 7.74 -2.91 -0.02 3.59 16 17 C 0.01 0.32 5.46 84.66 0.46 0.79 16 18 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 19 Si 0.98 44.66 29.54 68.60 2.03 46.69 16 20 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 23 C -0.01 -0.21 9.56 22.39 0.21 0.01 16 24 C -0.21 -4.14 9.16 22.24 0.20 -3.93 16 25 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.80 6.18 -2.39 -0.01 0.79 16 31 H 0.10 0.53 7.89 -2.39 -0.02 0.51 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.51 6.17 -2.39 -0.01 0.50 16 34 H 0.09 0.30 7.89 -2.39 -0.02 0.28 16 35 H 0.15 2.53 6.12 -2.91 -0.02 2.51 16 36 H 0.13 3.82 7.60 -2.91 -0.02 3.80 16 37 H 0.06 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.06 2.78 8.14 -2.38 -0.02 2.76 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.13 3.48 7.64 -2.91 -0.02 3.46 16 43 H 0.16 2.12 6.11 -2.91 -0.02 2.10 16 Total: -1.00 -72.18 360.47 6.35 -65.83 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 0.99 Total: 7.59 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.43 Total: -12.25 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -1.87 Total: -66.18 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.22 Total: -41.68 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -72.18 6.35 -65.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058390016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.729 kcal (2) G-P(sol) polarization free energy of solvation -72.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds