Wall clock time and date at job start Tue Mar 31 2020 06:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47356 * 2 1 4 4 N 1.46504 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00268 * 263.24844 * 4 3 2 6 6 H 1.07998 * 120.00238 * 188.09433 * 5 4 3 7 7 C 1.38952 * 119.99696 * 8.09535 * 5 4 3 8 8 N 1.31410 * 120.00221 * 26.09775 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 206.09426 * 7 5 4 10 10 H 1.48498 * 109.47058 * 84.98743 * 9 7 5 11 11 H 1.48496 * 109.47112 * 204.99210 * 9 7 5 12 12 H 1.48505 * 109.47003 * 324.99235 * 9 7 5 13 13 C 1.34778 * 119.99709 * 83.25868 * 4 3 2 14 14 O 1.21293 * 119.99990 * 359.97438 * 13 4 3 15 15 C 1.50702 * 119.99808 * 180.02562 * 13 4 3 16 16 O 1.42899 * 109.46956 * 179.97438 * 15 13 4 17 17 C 1.42899 * 114.00016 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47177 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47278 * 179.97438 * 18 17 16 20 20 C 1.38234 * 119.99771 * 89.99728 * 19 18 17 21 21 C 1.38237 * 119.99498 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.00584 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99937 * 0.27902 * 22 21 20 24 24 C 1.38234 * 120.00086 * 269.97848 * 19 18 17 25 25 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47077 * 300.00124 * 1 2 3 27 27 H 1.09009 * 109.46861 * 59.99848 * 1 2 3 28 28 H 1.08997 * 109.47077 * 239.99876 * 2 1 3 29 29 H 1.09000 * 109.47033 * 120.00290 * 2 1 3 30 30 H 1.09004 * 109.46863 * 60.00217 * 3 2 1 31 31 H 1.08997 * 109.47585 * 299.99709 * 3 2 1 32 32 H 0.96998 * 120.00239 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47388 * 59.99455 * 15 13 4 34 34 H 1.09000 * 109.46879 * 299.99166 * 15 13 4 35 35 H 1.08995 * 109.47661 * 59.99315 * 17 16 15 36 36 H 1.09007 * 109.46921 * 299.99161 * 17 16 15 37 37 H 1.09006 * 109.47232 * 60.00105 * 18 17 16 38 38 H 1.08994 * 109.47495 * 299.99671 * 18 17 16 39 39 H 1.07993 * 120.00115 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.99571 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.00564 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00201 * 179.72940 * 23 22 21 43 43 H 1.08000 * 120.00166 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1901 1.5820 1.1799 6 1 5.2620 1.7133 1.1695 7 6 3.5052 1.5548 2.3886 8 7 2.3619 0.9137 2.4817 9 14 4.2098 2.4293 3.8813 10 1 3.8116 3.8596 3.8507 11 1 3.6868 1.7962 5.1186 12 1 5.6912 2.3274 3.8612 13 6 4.1794 1.3051 -1.1583 14 8 3.5733 1.1812 -2.2016 15 6 5.6864 1.3044 -1.1576 16 8 6.1632 1.1455 -2.4953 17 6 7.5878 1.1310 -2.6066 18 6 7.9828 0.9561 -4.0744 19 6 9.4852 0.9414 -4.1919 20 6 10.1736 -0.2541 -4.1043 21 6 11.5516 -0.2676 -4.2127 22 6 12.2412 0.9142 -4.4092 23 6 11.5532 2.1104 -4.4916 24 6 10.1747 2.1234 -4.3878 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.8840 0.8943 3.3255 33 1 6.0491 0.4808 -0.5427 34 1 6.0499 2.2484 -0.7517 35 1 7.9896 0.3038 -2.0216 36 1 7.9912 2.0714 -2.2311 37 1 7.5810 1.7832 -4.6598 38 1 7.5795 0.0157 -4.4497 39 1 9.6349 -1.1774 -3.9512 40 1 12.0895 -1.2017 -4.1447 41 1 13.3178 0.9038 -4.4935 42 1 12.0922 3.0343 -4.6407 43 1 9.6369 3.0574 -4.4561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058824185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:09 Heat of formation + Delta-G solvation = -57.726106 kcal Electronic energy + Delta-G solvation = -22562.532258 eV Core-core repulsion = 19186.873105 eV Total energy + Delta-G solvation = -3375.659152 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.45886 -38.71047 -37.10954 -35.03029 -33.38722 -32.35944 -31.46339 -31.02642 -28.99705 -27.15018 -25.48978 -23.99390 -23.23975 -22.70559 -20.97399 -20.51731 -19.13512 -17.23597 -16.78982 -16.47696 -15.98555 -15.57051 -15.05697 -14.97627 -14.47755 -14.25683 -13.83167 -13.75019 -13.51113 -13.44605 -12.99116 -12.80205 -12.64359 -12.16532 -12.04171 -11.69517 -11.38530 -11.27775 -11.16407 -11.01308 -10.92896 -10.83582 -10.73468 -10.47631 -10.30417 -10.26963 -9.49157 -9.18654 -9.05084 -8.86359 -8.84458 -8.29742 -7.80514 -6.45004 -3.89868 1.19819 1.25897 3.07080 3.18766 3.19081 3.56894 3.83110 3.90195 4.10318 4.72049 4.75762 4.86357 4.95952 4.98919 5.12398 5.14816 5.38971 5.43630 5.49010 5.56934 5.81444 5.85339 5.88908 5.98635 6.05485 6.09149 6.14532 6.18180 6.24217 6.32514 6.36210 6.45173 6.55194 6.69142 6.86982 6.88896 6.99537 7.06699 7.26869 7.43660 7.62735 7.69820 7.77668 8.39846 9.02951 9.51189 9.92971 10.53981 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.003102 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.779072 B = 9024.521843 C =10033.932928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.141 3.859 4 N -0.439 5.439 5 C -0.346 4.346 6 H 0.098 0.902 7 C 0.041 3.959 8 N -0.847 5.847 9 Si 0.914 3.086 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.454 3.546 14 O -0.592 6.592 15 C 0.065 3.935 16 O -0.367 6.367 17 C 0.067 3.933 18 C -0.080 4.080 19 C -0.076 4.076 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.115 4.115 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.036 0.964 32 H 0.269 0.731 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 0.153 -6.764 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.019 3.981 4 N -0.159 5.159 5 C -0.473 4.473 6 H 0.116 0.884 7 C -0.165 4.165 8 N -0.484 5.484 9 Si 0.740 3.260 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.196 1.196 13 C 0.242 3.758 14 O -0.477 6.477 15 C -0.015 4.015 16 O -0.285 6.285 17 C -0.010 4.010 18 C -0.117 4.117 19 C -0.076 4.076 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.142 0.858 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.139 0.861 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.789 0.031 -7.265 14.708 hybrid contribution 0.621 0.404 1.256 1.458 sum 13.410 0.434 -6.009 14.701 Atomic orbital electron populations 1.21585 0.97521 0.99848 1.00409 1.21742 0.93809 0.98441 1.01898 1.21283 0.79597 0.96938 1.00327 1.43754 1.05611 1.61371 1.05114 1.19616 0.93527 1.51069 0.83121 0.88412 1.25150 0.96375 0.96110 0.98833 1.70152 1.16383 1.35174 1.26666 0.86166 0.79341 0.79989 0.80510 1.20211 1.20977 1.19570 1.19600 0.88157 0.83670 0.84374 1.90547 1.69690 1.55665 1.31827 1.22099 0.94974 1.01033 0.83362 1.87954 1.19128 1.94422 1.27040 1.22372 0.82671 1.00049 0.95895 1.20478 0.90366 1.04390 0.96506 1.19834 0.95329 0.93381 0.99045 1.21142 0.94318 0.97826 1.00015 1.21149 0.94333 0.98191 1.00140 1.21140 0.99768 0.92808 1.00830 1.21148 0.94332 0.98034 1.00316 1.21138 0.94302 0.97858 1.00025 0.94222 0.92992 0.94361 0.94586 0.88905 0.88667 0.94529 0.91994 0.91421 0.91738 0.93527 0.93566 0.89989 0.89964 0.85847 0.86125 0.86295 0.86135 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.91 37.16 0.37 -2.25 16 2 C -0.12 -2.80 5.74 -26.73 -0.15 -2.95 16 3 C 0.14 3.49 4.52 -4.04 -0.02 3.47 16 4 N -0.44 -11.22 2.64 -114.81 -0.30 -11.52 16 5 C -0.35 -8.59 9.25 -14.93 -0.14 -8.73 16 6 H 0.10 2.28 6.47 -52.49 -0.34 1.94 16 7 C 0.04 0.99 4.88 -17.47 -0.09 0.91 16 8 N -0.85 -20.81 8.72 55.50 0.48 -20.32 16 9 Si 0.91 18.73 29.63 -169.99 -5.04 13.70 16 10 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 13 C 0.45 11.56 7.66 -10.98 -0.08 11.48 16 14 O -0.59 -16.76 16.19 -14.36 -0.23 -17.00 16 15 C 0.06 1.36 4.80 36.01 0.17 1.53 16 16 O -0.37 -7.44 9.88 -55.14 -0.54 -7.99 16 17 C 0.07 1.02 5.92 37.16 0.22 1.24 16 18 C -0.08 -1.04 5.71 -27.88 -0.16 -1.20 16 19 C -0.08 -0.88 5.13 -104.62 -0.54 -1.42 16 20 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 21 C -0.12 -1.15 10.05 -39.59 -0.40 -1.55 16 22 C -0.13 -1.16 10.05 -39.59 -0.40 -1.56 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.04 0.70 8.14 -51.92 -0.42 0.27 16 28 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 2.32 6.42 -51.93 -0.33 1.99 16 30 H 0.10 2.39 5.81 -51.93 -0.30 2.09 16 31 H 0.04 0.91 7.63 -51.93 -0.40 0.51 16 32 H 0.27 6.28 8.31 -40.82 -0.34 5.94 16 33 H 0.07 1.35 8.02 -51.93 -0.42 0.93 16 34 H 0.06 1.25 7.79 -51.93 -0.40 0.85 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 38 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 357.20 15.07 5.38 5.38 Total: -1.00 -29.52 357.20 -9.44 -38.96 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.82 Total: 4.59 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.38 Total: -5.81 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.18 Total: -31.84 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.78 Total: -24.98 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.04 Total: 13.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.52 -9.44 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058824185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.766 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds