Wall clock time and date at job start Tue Mar 31 2020 06:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47356 * 2 1 4 4 N 1.46504 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.37099 * 120.00268 * 263.24844 * 4 3 2 6 6 H 1.07998 * 120.00238 * 188.09433 * 5 4 3 7 7 C 1.38952 * 119.99696 * 8.09535 * 5 4 3 8 8 N 1.31410 * 120.00221 * 26.09775 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 206.09426 * 7 5 4 10 10 H 1.48498 * 109.47058 * 84.98743 * 9 7 5 11 11 H 1.48496 * 109.47112 * 204.99210 * 9 7 5 12 12 H 1.48505 * 109.47003 * 324.99235 * 9 7 5 13 13 C 1.34778 * 119.99709 * 83.25868 * 4 3 2 14 14 O 1.21293 * 119.99990 * 359.97438 * 13 4 3 15 15 C 1.50702 * 119.99808 * 180.02562 * 13 4 3 16 16 O 1.42899 * 109.46956 * 179.97438 * 15 13 4 17 17 C 1.42899 * 114.00016 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47177 * 179.97438 * 17 16 15 19 19 C 1.50703 * 109.47278 * 179.97438 * 18 17 16 20 20 C 1.38234 * 119.99771 * 89.99728 * 19 18 17 21 21 C 1.38237 * 119.99498 * 179.97438 * 20 19 18 22 22 C 1.38229 * 120.00584 * 359.97438 * 21 20 19 23 23 C 1.38234 * 119.99937 * 0.27902 * 22 21 20 24 24 C 1.38234 * 120.00086 * 269.97848 * 19 18 17 25 25 H 1.08998 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47077 * 300.00124 * 1 2 3 27 27 H 1.09009 * 109.46861 * 59.99848 * 1 2 3 28 28 H 1.08997 * 109.47077 * 239.99876 * 2 1 3 29 29 H 1.09000 * 109.47033 * 120.00290 * 2 1 3 30 30 H 1.09004 * 109.46863 * 60.00217 * 3 2 1 31 31 H 1.08997 * 109.47585 * 299.99709 * 3 2 1 32 32 H 0.96998 * 120.00239 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47388 * 59.99455 * 15 13 4 34 34 H 1.09000 * 109.46879 * 299.99166 * 15 13 4 35 35 H 1.08995 * 109.47661 * 59.99315 * 17 16 15 36 36 H 1.09007 * 109.46921 * 299.99161 * 17 16 15 37 37 H 1.09006 * 109.47232 * 60.00105 * 18 17 16 38 38 H 1.08994 * 109.47495 * 299.99671 * 18 17 16 39 39 H 1.07993 * 120.00115 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.99571 * 180.02562 * 21 20 19 41 41 H 1.08000 * 120.00564 * 179.97438 * 22 21 20 42 42 H 1.07999 * 120.00201 * 179.72940 * 23 22 21 43 43 H 1.08000 * 120.00166 * 0.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1901 1.5820 1.1799 6 1 5.2620 1.7133 1.1695 7 6 3.5052 1.5548 2.3886 8 7 2.3619 0.9137 2.4817 9 14 4.2098 2.4293 3.8813 10 1 3.8116 3.8596 3.8507 11 1 3.6868 1.7962 5.1186 12 1 5.6912 2.3274 3.8612 13 6 4.1794 1.3051 -1.1583 14 8 3.5733 1.1812 -2.2016 15 6 5.6864 1.3044 -1.1576 16 8 6.1632 1.1455 -2.4953 17 6 7.5878 1.1310 -2.6066 18 6 7.9828 0.9561 -4.0744 19 6 9.4852 0.9414 -4.1919 20 6 10.1736 -0.2541 -4.1043 21 6 11.5516 -0.2676 -4.2127 22 6 12.2412 0.9142 -4.4092 23 6 11.5532 2.1104 -4.4916 24 6 10.1747 2.1234 -4.3878 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.8840 0.8943 3.3255 33 1 6.0491 0.4808 -0.5427 34 1 6.0499 2.2484 -0.7517 35 1 7.9896 0.3038 -2.0216 36 1 7.9912 2.0714 -2.2311 37 1 7.5810 1.7832 -4.6598 38 1 7.5795 0.0157 -4.4497 39 1 9.6349 -1.1774 -3.9512 40 1 12.0895 -1.2017 -4.1447 41 1 13.3178 0.9038 -4.4935 42 1 12.0922 3.0343 -4.6407 43 1 9.6369 3.0574 -4.4561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058824185.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:08 Heat of formation + Delta-G solvation = -71.347429 kcal Electronic energy + Delta-G solvation = -22563.122923 eV Core-core repulsion = 19186.873105 eV Total energy + Delta-G solvation = -3376.249817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65431 -40.19941 -38.61945 -36.96849 -34.44130 -34.12996 -33.38924 -31.76391 -30.19653 -28.64380 -27.32284 -25.74773 -24.36484 -23.45020 -22.38939 -21.84560 -21.04948 -18.97637 -18.22577 -17.67785 -17.33414 -17.03172 -16.25431 -16.15990 -16.10201 -15.79056 -15.41190 -15.36161 -15.07260 -14.31800 -14.15429 -14.11790 -13.83128 -13.75002 -13.45880 -13.25580 -13.15129 -12.67747 -12.53673 -12.36953 -12.31002 -12.18202 -12.10446 -12.00424 -11.93369 -11.79751 -11.38113 -10.79826 -10.62931 -10.28510 -9.81160 -9.75729 -9.63634 -8.31221 -5.83821 0.41630 0.50874 1.42464 1.52076 1.60927 1.96233 2.19721 2.44169 2.89271 3.07882 3.34680 3.88335 3.98082 4.11120 4.18198 4.19133 4.29203 4.32756 4.35919 4.39586 4.43253 4.46424 4.52627 4.62729 4.65687 4.67938 4.85232 4.92619 4.96550 5.06803 5.18015 5.19426 5.20558 5.27588 5.39972 5.54356 5.58396 5.63403 5.72992 5.76931 5.83981 6.13154 6.16873 6.49471 7.11452 7.57042 7.99279 8.68285 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019137 B = 0.003102 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.779072 B = 9024.521843 C =10033.932928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C 0.141 3.859 4 N -0.445 5.445 5 C -0.374 4.374 6 H 0.111 0.889 7 C 0.006 3.994 8 N -0.864 5.864 9 Si 0.985 3.015 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.261 1.261 13 C 0.432 3.568 14 O -0.634 6.634 15 C 0.078 3.922 16 O -0.394 6.394 17 C 0.064 3.936 18 C -0.073 4.073 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.125 4.125 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.128 4.128 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.046 0.954 28 H 0.013 0.987 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.274 0.726 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.256 0.527 -5.746 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.148 4.148 3 C 0.018 3.982 4 N -0.163 5.163 5 C -0.500 4.500 6 H 0.129 0.871 7 C -0.199 4.199 8 N -0.501 5.501 9 Si 0.809 3.191 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.185 1.185 13 C 0.222 3.778 14 O -0.523 6.523 15 C -0.002 4.002 16 O -0.314 6.314 17 C -0.012 4.012 18 C -0.110 4.110 19 C -0.092 4.092 20 C -0.147 4.147 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.146 4.146 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 14.674 0.399 -6.236 15.949 hybrid contribution 0.054 0.259 0.948 0.984 sum 14.728 0.658 -5.288 15.663 Atomic orbital electron populations 1.21506 0.94398 1.01483 1.01060 1.21589 0.96544 0.96902 0.99749 1.21283 0.79907 0.97664 0.99318 1.44024 1.05980 1.60542 1.05724 1.20022 0.94413 1.52463 0.83152 0.87143 1.25998 0.96775 0.95854 1.01244 1.70228 1.17217 1.35002 1.27622 0.85074 0.79095 0.78272 0.76687 1.20238 1.20836 1.18500 1.20384 0.90159 0.83498 0.83773 1.90497 1.70950 1.57730 1.33076 1.21892 0.91885 1.02183 0.84199 1.87921 1.22235 1.94636 1.26560 1.22626 0.79996 1.01016 0.97591 1.20387 0.91749 1.03873 0.95001 1.19751 0.94256 0.94324 1.00850 1.21311 0.95211 0.97724 1.00425 1.21454 0.93898 0.99491 0.99472 1.21517 1.01180 0.92393 0.99510 1.21461 0.93914 0.99309 0.99590 1.21315 0.95177 0.97776 1.00306 0.92121 0.92512 0.93469 0.96780 0.90685 0.89148 0.95673 0.91574 0.90495 0.90035 0.92638 0.92366 0.90412 0.90579 0.85499 0.84032 0.83736 0.83956 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.81 9.91 71.98 0.71 -4.09 16 2 C -0.11 -5.17 5.74 30.59 0.18 -4.99 16 3 C 0.14 7.13 4.52 86.38 0.39 7.52 16 4 N -0.44 -23.13 2.64 -635.52 -1.68 -24.81 16 5 C -0.37 -18.47 9.25 84.04 0.78 -17.69 16 6 H 0.11 5.04 6.47 -2.91 -0.02 5.02 16 7 C 0.01 0.28 4.88 84.93 0.41 0.70 16 8 N -0.86 -42.09 8.72 21.66 0.19 -41.91 16 9 Si 0.98 37.35 29.63 68.60 2.03 39.38 16 10 H -0.28 -10.50 7.11 99.48 0.71 -9.80 16 11 H -0.28 -10.62 7.11 99.48 0.71 -9.91 16 12 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 13 C 0.43 22.59 7.66 87.66 0.67 23.26 16 14 O -0.63 -37.27 16.19 15.97 0.26 -37.01 16 15 C 0.08 3.28 4.80 71.24 0.34 3.62 16 16 O -0.39 -16.21 9.88 -129.94 -1.28 -17.49 16 17 C 0.06 1.92 5.92 71.98 0.43 2.35 16 18 C -0.07 -1.90 5.71 29.85 0.17 -1.73 16 19 C -0.09 -2.08 5.13 -19.87 -0.10 -2.19 16 20 C -0.13 -2.66 9.70 22.27 0.22 -2.44 16 21 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 22 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 23 C -0.12 -2.11 10.05 22.27 0.22 -1.89 16 24 C -0.13 -2.60 9.70 22.27 0.22 -2.38 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 3.81 6.42 -2.39 -0.02 3.80 16 30 H 0.09 4.61 5.81 -2.39 -0.01 4.60 16 31 H 0.02 1.29 7.63 -2.39 -0.02 1.28 16 32 H 0.27 12.54 8.31 -92.71 -0.77 11.77 16 33 H 0.08 3.06 8.02 -2.39 -0.02 3.04 16 34 H 0.08 3.12 7.79 -2.39 -0.02 3.10 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 2.05 8.09 -2.38 -0.02 2.03 16 38 H 0.08 2.03 8.09 -2.39 -0.02 2.02 16 39 H 0.13 2.41 8.06 -2.91 -0.02 2.39 16 40 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 41 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -63.78 357.20 5.57 -58.21 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: 0.97 Total: 27.29 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 5.08 Total: -3.68 kcal Atomic # 7 Polarization: -65.22 SS G_CDS: -1.49 Total: -66.71 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -1.02 Total: -54.50 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -63.78 5.57 -58.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058824185.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.137 kcal (2) G-P(sol) polarization free energy of solvation -63.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds