Wall clock time and date at job start Tue Mar 31 2020 06:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47417 * 2 1 4 4 N 1.46494 * 109.47370 * 179.97438 * 3 2 1 5 5 C 1.37101 * 119.99725 * 94.61762 * 4 3 2 6 6 H 1.08001 * 119.99996 * 217.87664 * 5 4 3 7 7 C 1.38950 * 120.00242 * 37.87822 * 5 4 3 8 8 N 1.31414 * 119.99925 * 19.70427 * 7 5 4 9 9 Si 1.86801 * 120.00220 * 199.71297 * 7 5 4 10 10 H 1.48505 * 109.46800 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47279 * 119.99343 * 9 7 5 12 12 H 1.48500 * 109.47026 * 239.99806 * 9 7 5 13 13 C 1.34773 * 120.00329 * 274.89155 * 4 3 2 14 14 O 1.21286 * 120.00267 * 179.72393 * 13 4 3 15 15 C 1.50707 * 119.99789 * 359.72898 * 13 4 3 16 16 C 1.50697 * 109.47126 * 179.97438 * 15 13 4 17 17 C 1.38291 * 119.97506 * 89.99454 * 16 15 13 18 18 C 1.38243 * 120.11066 * 179.97438 * 17 16 15 19 19 C 1.38160 * 120.05709 * 359.97438 * 18 17 16 20 20 C 1.50703 * 120.02717 * 180.02562 * 19 18 17 21 21 C 1.38711 * 119.94809 * 0.02562 * 19 18 17 22 22 O 1.35894 * 120.05756 * 180.02562 * 21 19 18 23 23 C 1.42900 * 116.99731 * 179.97438 * 22 21 19 24 24 C 1.38124 * 119.97219 * 269.72404 * 16 15 13 25 25 H 1.09003 * 109.46817 * 300.00230 * 1 2 3 26 26 H 1.09004 * 109.46802 * 59.99611 * 1 2 3 27 27 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47408 * 240.00173 * 2 1 3 29 29 H 1.08993 * 109.47269 * 120.00247 * 2 1 3 30 30 H 1.08998 * 109.46690 * 59.99733 * 3 2 1 31 31 H 1.09000 * 109.46796 * 300.00619 * 3 2 1 32 32 H 0.97004 * 119.99987 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46737 * 299.99180 * 15 13 4 34 34 H 1.08997 * 109.47080 * 59.99650 * 15 13 4 35 35 H 1.07998 * 119.94116 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.96727 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47547 * 89.99998 * 20 19 18 38 38 H 1.09002 * 109.46842 * 210.00111 * 20 19 18 39 39 H 1.08998 * 109.46853 * 329.99904 * 20 19 18 40 40 H 1.08998 * 109.47495 * 300.00231 * 23 22 21 41 41 H 1.08996 * 109.47112 * 60.00227 * 23 22 21 42 42 H 1.09007 * 109.46954 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.02779 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1910 1.5379 -1.1826 6 1 5.1004 0.9734 -1.3266 7 6 3.7162 2.3608 -2.1966 8 7 2.8653 3.3227 -1.9179 9 14 4.2873 2.0998 -3.9559 10 1 5.2386 0.9605 -4.0035 11 1 3.1151 1.8028 -4.8179 12 1 4.9625 3.3288 -4.4446 13 6 4.1785 1.3431 1.1638 14 8 5.3913 1.3381 1.1639 15 6 3.4244 1.2382 2.4644 16 6 4.4032 1.1388 3.6059 17 6 4.8574 2.2870 4.2286 18 6 5.7549 2.1990 5.2764 19 6 6.2000 0.9630 5.7044 20 6 7.1780 0.8679 6.8470 21 6 5.7460 -0.1902 5.0815 22 8 6.1819 -1.4071 5.5010 23 6 5.6717 -2.5513 4.8136 24 6 4.8417 -0.0994 4.0331 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 2.5335 3.8970 -2.6258 33 1 2.8015 2.1230 2.5956 34 1 2.7941 0.3491 2.4483 35 1 4.5104 3.2540 3.8958 36 1 6.1078 3.0971 5.7613 37 1 6.6320 0.7936 7.7875 38 1 7.8021 -0.0165 6.7184 39 1 7.8074 1.7577 6.8616 40 1 4.5864 -2.5795 4.9106 41 1 5.9407 -2.4914 3.7590 42 1 6.0993 -3.4557 5.2464 43 1 4.4830 -0.9961 3.5496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:06 Heat of formation + Delta-G solvation = -58.137136 kcal Electronic energy + Delta-G solvation = -23546.818455 eV Core-core repulsion = 20171.141479 eV Total energy + Delta-G solvation = -3375.676976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08876 -38.63518 -37.18251 -35.24248 -33.42634 -32.68672 -31.18540 -29.87852 -29.24752 -27.45397 -26.01181 -25.19385 -23.85502 -21.97676 -21.10542 -20.81792 -18.97121 -17.12314 -16.84113 -16.15766 -15.96440 -15.59649 -15.25687 -14.85061 -14.39391 -14.18003 -13.93872 -13.69534 -13.46356 -13.38889 -12.92297 -12.67679 -12.32701 -12.16360 -11.90493 -11.79849 -11.62422 -11.54286 -11.41830 -11.15779 -11.01838 -10.97306 -10.74898 -10.64471 -10.50448 -10.29899 -10.23526 -9.93793 -8.92851 -8.54007 -8.26137 -7.75329 -7.42786 -6.31085 -3.96192 1.63764 1.78146 3.15939 3.26612 3.32889 3.43344 3.93494 3.99980 4.20323 4.86347 4.98065 5.04095 5.08253 5.18247 5.23601 5.31841 5.43805 5.46354 5.55367 5.60077 5.66501 5.75010 5.77454 5.84315 5.88433 5.94750 5.99888 6.08555 6.10692 6.24362 6.36481 6.45320 6.45866 6.57568 6.61632 6.75723 6.90370 7.00615 7.07888 7.26534 7.60254 7.61261 8.29228 8.53832 9.21809 9.42655 10.04577 10.73271 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.004197 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.707548 B = 6669.449102 C = 7091.451738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.105 3.895 4 N -0.444 5.444 5 C -0.305 4.305 6 H 0.089 0.911 7 C 0.037 3.963 8 N -0.871 5.871 9 Si 0.916 3.084 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.282 1.282 13 C 0.464 3.536 14 O -0.572 6.572 15 C -0.104 4.104 16 C -0.009 4.009 17 C -0.138 4.138 18 C -0.084 4.084 19 C -0.131 4.131 20 C -0.099 4.099 21 C 0.122 3.878 22 O -0.319 6.319 23 C 0.028 3.972 24 C -0.190 4.190 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.266 0.734 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.095 0.905 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.214 -6.522 12.127 13.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.020 4.020 4 N -0.163 5.163 5 C -0.433 4.433 6 H 0.107 0.893 7 C -0.167 4.167 8 N -0.510 5.510 9 Si 0.742 3.258 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.208 1.208 13 C 0.252 3.748 14 O -0.455 6.455 15 C -0.144 4.144 16 C -0.009 4.009 17 C -0.157 4.157 18 C -0.102 4.102 19 C -0.131 4.131 20 C -0.155 4.155 21 C 0.077 3.923 22 O -0.233 6.233 23 C -0.068 4.068 24 C -0.209 4.209 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.114 0.886 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.565 -6.422 12.151 13.832 hybrid contribution -0.170 -0.112 -1.271 1.287 sum -1.735 -6.534 10.880 12.809 Atomic orbital electron populations 1.21681 0.96337 1.00659 1.01605 1.21988 0.94892 0.99448 1.01599 1.21602 0.82246 0.94285 1.03849 1.43471 1.04446 1.63685 1.04693 1.19445 1.09499 1.24819 0.89561 0.89342 1.25358 0.97231 0.93638 1.00465 1.69925 1.32413 1.15498 1.33135 0.86042 0.78607 0.78584 0.82538 1.19237 1.20631 1.20772 1.20150 0.88061 0.82196 0.84389 1.90549 1.13965 1.54181 1.86759 1.20792 0.97316 1.03609 0.92688 1.19236 0.95528 0.92437 0.93728 1.20895 0.99541 0.98100 0.97134 1.20752 0.96774 0.95981 0.96662 1.19112 1.02564 0.90707 1.00744 1.20531 0.97238 1.02315 0.95446 1.18703 0.94605 0.84734 0.94209 1.85993 1.66682 1.12615 1.57964 1.23011 0.99303 0.86690 0.97767 1.20983 1.02010 0.98497 0.99400 0.93139 0.92710 0.93486 0.91720 0.93320 0.93446 0.87262 0.92365 0.89074 0.89613 0.86103 0.85767 0.91973 0.91564 0.92031 0.92856 0.92521 0.88635 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.14 -2.47 6.17 -26.73 -0.17 -2.64 16 3 C 0.10 2.22 4.71 -4.04 -0.02 2.20 16 4 N -0.44 -11.14 2.53 -114.81 -0.29 -11.43 16 5 C -0.31 -8.46 8.91 -14.93 -0.13 -8.60 16 6 H 0.09 2.59 7.76 -52.49 -0.41 2.18 16 7 C 0.04 0.97 4.95 -17.47 -0.09 0.89 16 8 N -0.87 -23.38 11.45 55.50 0.64 -22.74 16 9 Si 0.92 20.64 29.60 -169.99 -5.03 15.61 16 10 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.46 11.38 7.59 -10.98 -0.08 11.29 16 14 O -0.57 -16.26 15.90 5.55 0.09 -16.17 16 15 C -0.10 -1.95 4.43 -29.03 -0.13 -2.08 16 16 C -0.01 -0.16 4.37 -104.65 -0.46 -0.62 16 17 C -0.14 -2.39 9.70 -39.56 -0.38 -2.78 16 18 C -0.08 -1.28 9.70 -39.61 -0.38 -1.67 16 19 C -0.13 -2.01 5.89 -104.47 -0.62 -2.63 16 20 C -0.10 -1.20 9.79 36.01 0.35 -0.85 16 21 C 0.12 2.00 6.66 -39.22 -0.26 1.74 16 22 O -0.32 -4.66 9.54 -19.41 -0.19 -4.84 16 23 C 0.03 0.31 9.81 101.05 0.99 1.30 16 24 C -0.19 -3.28 8.69 -39.43 -0.34 -3.62 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.05 0.81 6.65 -51.93 -0.35 0.46 16 30 H 0.05 0.92 6.64 -51.93 -0.34 0.57 16 31 H 0.11 2.58 5.54 -51.93 -0.29 2.29 16 32 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 33 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 34 H 0.09 1.42 6.53 -51.93 -0.34 1.08 16 35 H 0.12 1.98 8.06 -52.49 -0.42 1.55 16 36 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 39 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.05 0.54 7.65 -51.93 -0.40 0.14 16 41 H 0.06 0.67 7.67 -51.93 -0.40 0.27 16 42 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 43 H 0.12 1.94 6.30 -52.49 -0.33 1.61 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -32.29 352.63 -7.38 -39.67 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.56 Total: 4.34 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: -1.35 Total: -9.74 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.35 Total: -34.17 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.10 Total: -21.01 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.29 -7.38 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.470 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds