Wall clock time and date at job start Tue Mar 31 2020 06:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47417 * 2 1 4 4 N 1.46494 * 109.47370 * 179.97438 * 3 2 1 5 5 C 1.37101 * 119.99725 * 94.61762 * 4 3 2 6 6 H 1.08001 * 119.99996 * 217.87664 * 5 4 3 7 7 C 1.38950 * 120.00242 * 37.87822 * 5 4 3 8 8 N 1.31414 * 119.99925 * 19.70427 * 7 5 4 9 9 Si 1.86801 * 120.00220 * 199.71297 * 7 5 4 10 10 H 1.48505 * 109.46800 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47279 * 119.99343 * 9 7 5 12 12 H 1.48500 * 109.47026 * 239.99806 * 9 7 5 13 13 C 1.34773 * 120.00329 * 274.89155 * 4 3 2 14 14 O 1.21286 * 120.00267 * 179.72393 * 13 4 3 15 15 C 1.50707 * 119.99789 * 359.72898 * 13 4 3 16 16 C 1.50697 * 109.47126 * 179.97438 * 15 13 4 17 17 C 1.38291 * 119.97506 * 89.99454 * 16 15 13 18 18 C 1.38243 * 120.11066 * 179.97438 * 17 16 15 19 19 C 1.38160 * 120.05709 * 359.97438 * 18 17 16 20 20 C 1.50703 * 120.02717 * 180.02562 * 19 18 17 21 21 C 1.38711 * 119.94809 * 0.02562 * 19 18 17 22 22 O 1.35894 * 120.05756 * 180.02562 * 21 19 18 23 23 C 1.42900 * 116.99731 * 179.97438 * 22 21 19 24 24 C 1.38124 * 119.97219 * 269.72404 * 16 15 13 25 25 H 1.09003 * 109.46817 * 300.00230 * 1 2 3 26 26 H 1.09004 * 109.46802 * 59.99611 * 1 2 3 27 27 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47408 * 240.00173 * 2 1 3 29 29 H 1.08993 * 109.47269 * 120.00247 * 2 1 3 30 30 H 1.08998 * 109.46690 * 59.99733 * 3 2 1 31 31 H 1.09000 * 109.46796 * 300.00619 * 3 2 1 32 32 H 0.97004 * 119.99987 * 180.02562 * 8 7 5 33 33 H 1.09003 * 109.46737 * 299.99180 * 15 13 4 34 34 H 1.08997 * 109.47080 * 59.99650 * 15 13 4 35 35 H 1.07998 * 119.94116 * 359.97438 * 17 16 15 36 36 H 1.07998 * 119.96727 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47547 * 89.99998 * 20 19 18 38 38 H 1.09002 * 109.46842 * 210.00111 * 20 19 18 39 39 H 1.08998 * 109.46853 * 329.99904 * 20 19 18 40 40 H 1.08998 * 109.47495 * 300.00231 * 23 22 21 41 41 H 1.08996 * 109.47112 * 60.00227 * 23 22 21 42 42 H 1.09007 * 109.46954 * 179.97438 * 23 22 21 43 43 H 1.08002 * 120.02779 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1910 1.5379 -1.1826 6 1 5.1004 0.9734 -1.3266 7 6 3.7162 2.3608 -2.1966 8 7 2.8653 3.3227 -1.9179 9 14 4.2873 2.0998 -3.9559 10 1 5.2386 0.9605 -4.0035 11 1 3.1151 1.8028 -4.8179 12 1 4.9625 3.3288 -4.4446 13 6 4.1785 1.3431 1.1638 14 8 5.3913 1.3381 1.1639 15 6 3.4244 1.2382 2.4644 16 6 4.4032 1.1388 3.6059 17 6 4.8574 2.2870 4.2286 18 6 5.7549 2.1990 5.2764 19 6 6.2000 0.9630 5.7044 20 6 7.1780 0.8679 6.8470 21 6 5.7460 -0.1902 5.0815 22 8 6.1819 -1.4071 5.5010 23 6 5.6717 -2.5513 4.8136 24 6 4.8417 -0.0994 4.0331 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 2.5335 3.8970 -2.6258 33 1 2.8015 2.1230 2.5956 34 1 2.7941 0.3491 2.4483 35 1 4.5104 3.2540 3.8958 36 1 6.1078 3.0971 5.7613 37 1 6.6320 0.7936 7.7875 38 1 7.8021 -0.0165 6.7184 39 1 7.8074 1.7577 6.8616 40 1 4.5864 -2.5795 4.9106 41 1 5.9407 -2.4914 3.7590 42 1 6.0993 -3.4557 5.2464 43 1 4.4830 -0.9961 3.5496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060541846.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:05 Heat of formation + Delta-G solvation = -76.260359 kcal Electronic energy + Delta-G solvation = -23547.604336 eV Core-core repulsion = 20171.141479 eV Total energy + Delta-G solvation = -3376.462858 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.33831 -40.36727 -38.41816 -37.06898 -34.85653 -34.29921 -32.98710 -31.08285 -30.64286 -28.42418 -27.69342 -26.65010 -25.46993 -23.16647 -22.53559 -22.16699 -20.70464 -18.79147 -18.35811 -17.80988 -17.35264 -16.80586 -16.63764 -16.46889 -16.02868 -15.76848 -15.37062 -15.10149 -14.71774 -14.58242 -14.29019 -14.15234 -13.66991 -13.46898 -13.39387 -13.17193 -13.00102 -12.89797 -12.79726 -12.63837 -12.61783 -12.26088 -12.17221 -12.07575 -11.98036 -11.90932 -11.71787 -11.49726 -10.88379 -10.38390 -9.62577 -9.40811 -8.98934 -8.33456 -6.06978 0.37214 0.52196 1.34782 1.39859 1.53118 2.06384 2.28807 2.39032 2.72455 3.00820 3.21380 3.70688 3.86240 4.06615 4.10084 4.20299 4.22398 4.31442 4.35467 4.37595 4.38956 4.56060 4.60715 4.68200 4.69278 4.72025 4.79737 4.79914 4.88518 4.97021 5.01389 5.15486 5.30431 5.31773 5.38624 5.41454 5.48152 5.55376 5.60911 5.70616 5.88425 6.23018 6.45254 6.56307 7.20019 7.48433 8.09698 8.69189 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.004197 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.707548 B = 6669.449102 C = 7091.451738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.105 3.895 4 N -0.455 5.455 5 C -0.340 4.340 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.889 5.889 9 Si 0.978 3.022 10 H -0.273 1.273 11 H -0.262 1.262 12 H -0.279 1.279 13 C 0.452 3.548 14 O -0.623 6.623 15 C -0.087 4.087 16 C -0.035 4.035 17 C -0.157 4.157 18 C -0.084 4.084 19 C -0.137 4.137 20 C -0.095 4.095 21 C 0.112 3.888 22 O -0.324 6.324 23 C 0.020 3.980 24 C -0.203 4.203 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.273 0.727 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.122 0.878 36 H 0.154 0.846 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.127 0.873 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -7.061 13.220 15.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C -0.018 4.018 4 N -0.174 5.174 5 C -0.468 4.468 6 H 0.076 0.924 7 C -0.197 4.197 8 N -0.526 5.526 9 Si 0.801 3.199 10 H -0.198 1.198 11 H -0.187 1.187 12 H -0.205 1.205 13 C 0.242 3.758 14 O -0.509 6.509 15 C -0.127 4.127 16 C -0.036 4.036 17 C -0.176 4.176 18 C -0.102 4.102 19 C -0.138 4.138 20 C -0.152 4.152 21 C 0.067 3.933 22 O -0.238 6.238 23 C -0.074 4.074 24 C -0.221 4.221 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.140 0.860 36 H 0.172 0.828 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.145 0.855 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.508 -6.967 13.248 15.177 hybrid contribution 0.151 0.045 -1.569 1.577 sum -2.358 -6.922 11.679 13.779 Atomic orbital electron populations 1.21633 0.93258 1.02408 1.02215 1.21886 0.97431 0.96614 1.01172 1.21706 0.80011 0.96700 1.03410 1.43754 1.05995 1.63291 1.04332 1.19352 1.09751 1.25981 0.91713 0.92387 1.26051 0.97092 0.92881 1.03649 1.69985 1.32644 1.15566 1.34449 0.85131 0.78596 0.78153 0.77993 1.19793 1.18670 1.20467 1.21059 0.87880 0.80893 0.85991 1.90497 1.16340 1.56340 1.87755 1.20653 0.97175 1.05240 0.89633 1.19320 0.96634 0.93390 0.94212 1.21100 1.00451 0.97917 0.98099 1.21094 0.95848 0.97277 0.95948 1.19600 1.02528 0.90421 1.01253 1.20580 0.96787 1.03000 0.94811 1.18933 0.94406 0.85907 0.94075 1.85988 1.66827 1.12720 1.58290 1.23278 1.00350 0.86563 0.97252 1.21126 1.02568 0.98434 1.00015 0.91437 0.93223 0.91170 0.93730 0.92202 0.91697 0.89671 0.91731 0.87687 0.87324 0.86000 0.82840 0.90221 0.91879 0.90358 0.91739 0.93676 0.85499 0.85335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.13 -4.54 6.17 30.59 0.19 -4.35 16 3 C 0.10 4.46 4.71 86.38 0.41 4.86 16 4 N -0.46 -23.49 2.53 -635.55 -1.61 -25.09 16 5 C -0.34 -19.57 8.91 84.04 0.75 -18.82 16 6 H 0.06 3.61 7.76 -2.91 -0.02 3.59 16 7 C 0.01 0.31 4.95 84.93 0.42 0.73 16 8 N -0.89 -48.04 11.45 21.66 0.25 -47.79 16 9 Si 0.98 42.82 29.60 68.60 2.03 44.85 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 C 0.45 22.79 7.59 87.66 0.67 23.45 16 14 O -0.62 -37.02 15.90 -3.05 -0.05 -37.07 16 15 C -0.09 -3.28 4.43 29.10 0.13 -3.15 16 16 C -0.03 -1.29 4.37 -19.88 -0.09 -1.38 16 17 C -0.16 -5.42 9.70 22.28 0.22 -5.20 16 18 C -0.08 -2.47 9.70 22.25 0.22 -2.25 16 19 C -0.14 -4.04 5.89 -19.77 -0.12 -4.16 16 20 C -0.10 -2.10 9.79 71.24 0.70 -1.40 16 21 C 0.11 3.58 6.66 22.51 0.15 3.73 16 22 O -0.32 -9.09 9.54 -92.35 -0.88 -9.97 16 23 C 0.02 0.42 9.81 113.37 1.11 1.53 16 24 C -0.20 -6.97 8.69 22.37 0.19 -6.78 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.90 6.65 -2.39 -0.02 1.88 16 30 H 0.06 2.47 6.64 -2.39 -0.02 2.45 16 31 H 0.09 4.06 5.54 -2.39 -0.01 4.05 16 32 H 0.27 13.73 8.31 -92.71 -0.77 12.95 16 33 H 0.10 3.58 7.36 -2.39 -0.02 3.57 16 34 H 0.11 3.48 6.53 -2.39 -0.02 3.47 16 35 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 36 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 37 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.43 7.53 -2.39 -0.02 1.42 16 39 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 40 H 0.06 1.20 7.65 -2.39 -0.02 1.18 16 41 H 0.04 1.05 7.67 -2.39 -0.02 1.03 16 42 H 0.13 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.13 4.07 6.30 -2.91 -0.02 4.05 16 Total: -1.00 -72.42 352.63 6.39 -66.03 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.99 Total: 25.07 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 5.66 Total: -16.03 kcal Atomic # 7 Polarization: -71.53 SS G_CDS: -1.36 Total: -72.89 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.93 Total: -47.04 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -72.42 6.39 -66.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541846.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.228 kcal (2) G-P(sol) polarization free energy of solvation -72.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds