Wall clock time and date at job start Tue Mar 31 2020 06:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47423 * 2 1 4 4 N 1.46494 * 109.47537 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99849 * 263.61618 * 4 3 2 6 6 H 1.08006 * 119.99706 * 142.25425 * 5 4 3 7 7 C 1.38940 * 120.00244 * 322.25740 * 5 4 3 8 8 N 1.31406 * 120.00339 * 157.62924 * 7 5 4 9 9 Si 1.86802 * 119.99721 * 337.62184 * 7 5 4 10 10 H 1.48507 * 109.47040 * 95.70621 * 9 7 5 11 11 H 1.48505 * 109.47411 * 215.70293 * 9 7 5 12 12 H 1.48492 * 109.47350 * 335.70458 * 9 7 5 13 13 C 1.34773 * 120.00374 * 83.61184 * 4 3 2 14 14 O 1.21297 * 119.99677 * 0.02562 * 13 4 3 15 15 C 1.50701 * 120.00415 * 180.02562 * 13 4 3 16 16 C 1.50700 * 109.47083 * 180.02562 * 15 13 4 17 17 C 1.38172 * 120.02537 * 265.02116 * 16 15 13 18 18 C 1.38242 * 120.04914 * 179.97438 * 17 16 15 19 19 C 1.50707 * 119.94144 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.11906 * 0.02689 * 18 17 16 21 21 C 1.38132 * 120.05352 * 359.67423 * 20 18 17 22 22 C 1.38713 * 120.02897 * 85.00213 * 16 15 13 23 23 O 1.35898 * 120.05349 * 0.02562 * 22 16 15 24 24 C 1.42898 * 117.00017 * 179.97438 * 23 22 16 25 25 H 1.08996 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46775 * 300.00153 * 1 2 3 27 27 H 1.08995 * 109.46829 * 59.99533 * 1 2 3 28 28 H 1.09000 * 109.47600 * 240.00180 * 2 1 3 29 29 H 1.09005 * 109.47207 * 120.00130 * 2 1 3 30 30 H 1.09005 * 109.46758 * 60.00272 * 3 2 1 31 31 H 1.08998 * 109.46662 * 300.00367 * 3 2 1 32 32 H 0.97001 * 120.00236 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46864 * 60.00543 * 15 13 4 34 34 H 1.08993 * 109.47109 * 300.00428 * 15 13 4 35 35 H 1.07997 * 119.97445 * 359.96005 * 17 16 15 36 36 H 1.08998 * 109.47255 * 89.99987 * 19 18 17 37 37 H 1.08998 * 109.46974 * 210.00465 * 19 18 17 38 38 H 1.09001 * 109.46699 * 330.00148 * 19 18 17 39 39 H 1.08006 * 119.97742 * 179.97438 * 20 18 17 40 40 H 1.07996 * 120.03103 * 180.32353 * 21 20 18 41 41 H 1.09005 * 109.47169 * 300.00563 * 24 23 22 42 42 H 1.09005 * 109.46790 * 59.99847 * 24 23 22 43 43 H 1.08994 * 109.47335 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5744 1.1791 6 1 5.1016 1.0162 1.3396 7 6 3.7147 2.4260 2.1683 8 7 4.0763 2.2475 3.4190 9 14 2.5606 3.8248 1.7202 10 1 1.1552 3.3940 1.9314 11 1 2.8519 5.0012 2.5784 12 1 2.7571 4.1913 0.2946 13 6 4.1785 1.3129 -1.1608 14 8 3.5716 1.1966 -2.2046 15 6 5.6855 1.3123 -1.1614 16 6 6.1872 1.1552 -2.5737 17 6 6.5149 -0.0976 -3.0557 18 6 6.9747 -0.2423 -4.3513 19 6 7.3309 -1.6100 -4.8747 20 6 7.1084 0.8655 -5.1680 21 6 6.7763 2.1193 -4.6929 22 6 6.3200 2.2681 -3.3910 23 8 5.9985 3.5013 -2.9192 24 6 6.1607 4.6017 -3.8163 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.7440 2.8423 4.1095 33 1 6.0487 0.4846 -0.5522 34 1 6.0493 2.2536 -0.7495 35 1 6.4120 -0.9643 -2.4196 36 1 6.4512 -2.0654 -5.3295 37 1 8.1200 -1.5192 -5.6211 38 1 7.6790 -2.2345 -4.0519 39 1 7.4682 0.7498 -6.1797 40 1 6.8759 2.9836 -5.3327 41 1 7.2042 4.6687 -4.1242 42 1 5.5320 4.4507 -4.6939 43 1 5.8701 5.5249 -3.3151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060541899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:08 Heat of formation + Delta-G solvation = -52.915518 kcal Electronic energy + Delta-G solvation = -23931.315281 eV Core-core repulsion = 20555.864732 eV Total energy + Delta-G solvation = -3375.450550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.06964 -38.61731 -37.34558 -35.23155 -33.11127 -32.55616 -31.57105 -31.28841 -27.79583 -27.62370 -25.76700 -25.46494 -24.43651 -21.84242 -21.18611 -20.45197 -18.86013 -17.73680 -16.78883 -16.17740 -16.12085 -15.40395 -15.23673 -14.63836 -14.19834 -14.10353 -13.94089 -13.77027 -13.56271 -13.43479 -12.99079 -12.68258 -12.55036 -12.28930 -12.07208 -11.82384 -11.68103 -11.59335 -11.48139 -11.31992 -10.95052 -10.78384 -10.72511 -10.60313 -10.44947 -10.34065 -9.98684 -9.73075 -9.14014 -8.68974 -8.33995 -7.72284 -7.62722 -6.45687 -4.02918 1.65542 1.74720 3.08332 3.24307 3.35370 3.60811 3.85658 3.99372 4.17138 4.56687 4.97016 5.01355 5.07626 5.15600 5.23094 5.30586 5.45188 5.58890 5.60955 5.63059 5.67671 5.72591 5.76230 5.89222 5.92529 6.05539 6.09076 6.13095 6.22203 6.30197 6.42009 6.43626 6.47316 6.58259 6.63147 6.80959 6.83172 6.92000 6.96288 7.13903 7.43463 7.74205 8.12240 8.30006 9.01712 9.43371 9.78810 10.65297 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.005362 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.897757 B = 5220.314002 C = 5891.752528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.106 3.894 4 N -0.468 5.468 5 C -0.343 4.343 6 H 0.104 0.896 7 C 0.069 3.931 8 N -0.860 5.860 9 Si 0.872 3.128 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.260 1.260 13 C 0.490 3.510 14 O -0.592 6.592 15 C -0.077 4.077 16 C -0.073 4.073 17 C -0.073 4.073 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.092 4.092 21 C -0.208 4.208 22 C 0.137 3.863 23 O -0.306 6.306 24 C 0.030 3.970 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.274 0.726 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.125 0.875 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -1.060 -12.163 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.017 4.017 4 N -0.188 5.188 5 C -0.470 4.470 6 H 0.121 0.879 7 C -0.138 4.138 8 N -0.496 5.496 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.184 1.184 13 C 0.279 3.721 14 O -0.476 6.476 15 C -0.116 4.116 16 C -0.074 4.074 17 C -0.091 4.091 18 C -0.129 4.129 19 C -0.161 4.161 20 C -0.110 4.110 21 C -0.227 4.227 22 C 0.091 3.909 23 O -0.219 6.219 24 C -0.066 4.066 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.143 0.857 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.839 -0.989 -12.257 12.883 hybrid contribution -0.569 1.001 -0.128 1.158 sum 3.270 0.012 -12.386 12.810 Atomic orbital electron populations 1.21703 0.96471 1.00980 1.01312 1.21773 0.94736 0.98131 1.02397 1.21590 0.82776 0.96511 1.00795 1.43738 1.03784 1.65029 1.06299 1.19061 1.10897 1.26187 0.90842 0.87883 1.25307 0.96855 0.97038 0.94634 1.69774 1.43808 1.36407 0.99571 0.87009 0.80576 0.82633 0.79879 1.20208 1.21505 1.18445 1.20201 0.89113 0.79700 0.83049 1.90542 1.70337 1.54941 1.31805 1.20267 0.94242 1.04911 0.92226 1.18982 1.01382 0.90876 0.96169 1.20716 0.97538 0.95868 0.95011 1.19688 1.03264 0.95461 0.94447 1.20668 1.01057 0.93519 1.00900 1.20636 0.99910 0.91654 0.98849 1.21076 1.07739 0.98619 0.95248 1.18790 0.95087 0.84926 0.92076 1.86166 1.81965 1.13322 1.40439 1.22987 1.00640 0.88508 0.94434 0.93083 0.93049 0.93093 0.91935 0.91442 0.91556 0.92031 0.91581 0.89088 0.88023 0.85723 0.91722 0.92160 0.91844 0.86488 0.85994 0.93097 0.93013 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 9.91 37.16 0.37 -2.05 16 2 C -0.13 -2.65 6.21 -26.73 -0.17 -2.82 16 3 C 0.11 2.45 3.93 -4.04 -0.02 2.43 16 4 N -0.47 -11.57 2.18 -114.81 -0.25 -11.82 16 5 C -0.34 -8.98 9.05 -14.93 -0.14 -9.11 16 6 H 0.10 2.78 7.23 -52.48 -0.38 2.40 16 7 C 0.07 1.83 5.26 -17.47 -0.09 1.74 16 8 N -0.86 -23.75 13.96 55.49 0.77 -22.98 16 9 Si 0.87 20.87 25.06 -169.99 -4.26 16.61 16 10 H -0.28 -6.33 6.69 56.52 0.38 -5.96 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.26 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.49 11.82 7.58 -10.99 -0.08 11.73 16 14 O -0.59 -15.35 15.72 5.54 0.09 -15.27 16 15 C -0.08 -1.60 4.25 -29.03 -0.12 -1.73 16 16 C -0.07 -1.39 4.39 -104.47 -0.46 -1.85 16 17 C -0.07 -1.23 9.33 -39.60 -0.37 -1.60 16 18 C -0.13 -1.87 5.88 -104.60 -0.62 -2.49 16 19 C -0.10 -1.16 10.01 36.01 0.36 -0.80 16 20 C -0.09 -1.29 9.69 -39.60 -0.38 -1.68 16 21 C -0.21 -3.16 9.04 -39.43 -0.36 -3.52 16 22 C 0.14 2.49 6.66 -39.22 -0.26 2.23 16 23 O -0.31 -5.62 9.63 -19.42 -0.19 -5.81 16 24 C 0.03 0.38 9.81 101.05 0.99 1.37 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.07 1.56 3.65 -51.93 -0.19 1.37 16 31 H 0.06 1.43 7.62 -51.93 -0.40 1.03 16 32 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 34 H 0.10 2.17 7.64 -51.93 -0.40 1.77 16 35 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 41 H 0.05 0.54 7.68 -51.93 -0.40 0.14 16 42 H 0.05 0.62 7.65 -51.93 -0.40 0.22 16 43 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 351.39 15.07 5.30 5.30 Total: -1.00 -31.13 351.39 -6.56 -37.69 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.68 Total: 4.39 kcal Atomic # 6 Polarization: -6.78 SS G_CDS: -1.34 Total: -8.12 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.52 Total: -34.80 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.10 Total: -21.07 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.26 Total: 16.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.13 -6.56 -37.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.224 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds