Wall clock time and date at job start Tue Mar 31 2020 06:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47423 * 2 1 4 4 N 1.46494 * 109.47537 * 180.02562 * 3 2 1 5 5 C 1.37104 * 119.99849 * 263.61618 * 4 3 2 6 6 H 1.08006 * 119.99706 * 142.25425 * 5 4 3 7 7 C 1.38940 * 120.00244 * 322.25740 * 5 4 3 8 8 N 1.31406 * 120.00339 * 157.62924 * 7 5 4 9 9 Si 1.86802 * 119.99721 * 337.62184 * 7 5 4 10 10 H 1.48507 * 109.47040 * 95.70621 * 9 7 5 11 11 H 1.48505 * 109.47411 * 215.70293 * 9 7 5 12 12 H 1.48492 * 109.47350 * 335.70458 * 9 7 5 13 13 C 1.34773 * 120.00374 * 83.61184 * 4 3 2 14 14 O 1.21297 * 119.99677 * 0.02562 * 13 4 3 15 15 C 1.50701 * 120.00415 * 180.02562 * 13 4 3 16 16 C 1.50700 * 109.47083 * 180.02562 * 15 13 4 17 17 C 1.38172 * 120.02537 * 265.02116 * 16 15 13 18 18 C 1.38242 * 120.04914 * 179.97438 * 17 16 15 19 19 C 1.50707 * 119.94144 * 180.02562 * 18 17 16 20 20 C 1.38281 * 120.11906 * 0.02689 * 18 17 16 21 21 C 1.38132 * 120.05352 * 359.67423 * 20 18 17 22 22 C 1.38713 * 120.02897 * 85.00213 * 16 15 13 23 23 O 1.35898 * 120.05349 * 0.02562 * 22 16 15 24 24 C 1.42898 * 117.00017 * 179.97438 * 23 22 16 25 25 H 1.08996 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46775 * 300.00153 * 1 2 3 27 27 H 1.08995 * 109.46829 * 59.99533 * 1 2 3 28 28 H 1.09000 * 109.47600 * 240.00180 * 2 1 3 29 29 H 1.09005 * 109.47207 * 120.00130 * 2 1 3 30 30 H 1.09005 * 109.46758 * 60.00272 * 3 2 1 31 31 H 1.08998 * 109.46662 * 300.00367 * 3 2 1 32 32 H 0.97001 * 120.00236 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46864 * 60.00543 * 15 13 4 34 34 H 1.08993 * 109.47109 * 300.00428 * 15 13 4 35 35 H 1.07997 * 119.97445 * 359.96005 * 17 16 15 36 36 H 1.08998 * 109.47255 * 89.99987 * 19 18 17 37 37 H 1.08998 * 109.46974 * 210.00465 * 19 18 17 38 38 H 1.09001 * 109.46699 * 330.00148 * 19 18 17 39 39 H 1.08006 * 119.97742 * 179.97438 * 20 18 17 40 40 H 1.07996 * 120.03103 * 180.32353 * 21 20 18 41 41 H 1.09005 * 109.47169 * 300.00563 * 24 23 22 42 42 H 1.09005 * 109.46790 * 59.99847 * 24 23 22 43 43 H 1.08994 * 109.47335 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.5744 1.1791 6 1 5.1016 1.0162 1.3396 7 6 3.7147 2.4260 2.1683 8 7 4.0763 2.2475 3.4190 9 14 2.5606 3.8248 1.7202 10 1 1.1552 3.3940 1.9314 11 1 2.8519 5.0012 2.5784 12 1 2.7571 4.1913 0.2946 13 6 4.1785 1.3129 -1.1608 14 8 3.5716 1.1966 -2.2046 15 6 5.6855 1.3123 -1.1614 16 6 6.1872 1.1552 -2.5737 17 6 6.5149 -0.0976 -3.0557 18 6 6.9747 -0.2423 -4.3513 19 6 7.3309 -1.6100 -4.8747 20 6 7.1084 0.8655 -5.1680 21 6 6.7763 2.1193 -4.6929 22 6 6.3200 2.2681 -3.3910 23 8 5.9985 3.5013 -2.9192 24 6 6.1607 4.6017 -3.8163 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.7440 2.8423 4.1095 33 1 6.0487 0.4846 -0.5522 34 1 6.0493 2.2536 -0.7495 35 1 6.4120 -0.9643 -2.4196 36 1 6.4512 -2.0654 -5.3295 37 1 8.1200 -1.5192 -5.6211 38 1 7.6790 -2.2345 -4.0519 39 1 7.4682 0.7498 -6.1797 40 1 6.8759 2.9836 -5.3327 41 1 7.2042 4.6687 -4.1242 42 1 5.5320 4.4507 -4.6939 43 1 5.8701 5.5249 -3.3151 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060541899.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:08 Heat of formation + Delta-G solvation = -70.455898 kcal Electronic energy + Delta-G solvation = -23932.075889 eV Core-core repulsion = 20555.864732 eV Total energy + Delta-G solvation = -3376.211158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.41296 -40.40097 -38.54793 -37.11255 -34.85247 -34.04346 -33.42037 -32.43804 -29.26311 -28.68983 -27.39064 -26.72582 -26.24311 -23.16886 -22.66735 -21.81112 -20.76043 -19.07887 -18.54447 -18.02822 -17.45126 -17.12272 -16.57595 -16.15786 -15.72368 -15.67147 -15.53106 -15.20791 -14.76052 -14.68621 -14.41366 -14.30775 -14.12879 -13.90582 -13.33295 -13.27912 -13.05086 -12.93953 -12.82124 -12.61110 -12.56974 -12.54144 -12.18843 -12.10367 -11.92085 -11.70247 -11.62744 -11.52594 -11.09176 -10.50095 -9.77500 -9.67249 -8.85962 -8.53225 -6.12335 0.42151 0.53831 1.15704 1.28184 1.40923 1.92720 2.16683 2.47838 2.58172 2.85576 3.05188 3.81954 3.89940 3.95001 4.06066 4.13353 4.23366 4.34403 4.37046 4.38234 4.40119 4.47006 4.54685 4.57414 4.65095 4.66995 4.68255 4.81765 4.88560 4.92498 4.93460 5.08267 5.16074 5.21488 5.25710 5.30275 5.41751 5.49607 5.54179 5.72729 5.97640 6.05254 6.27400 6.55761 6.95948 7.43218 7.81396 8.61218 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015879 B = 0.005362 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.897757 B = 5220.314002 C = 5891.752528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.100 3.900 4 N -0.478 5.478 5 C -0.342 4.342 6 H 0.085 0.915 7 C 0.035 3.965 8 N -0.892 5.892 9 Si 0.919 3.081 10 H -0.256 1.256 11 H -0.280 1.280 12 H -0.276 1.276 13 C 0.486 3.514 14 O -0.610 6.610 15 C -0.067 4.067 16 C -0.109 4.109 17 C -0.088 4.088 18 C -0.130 4.130 19 C -0.103 4.103 20 C -0.087 4.087 21 C -0.207 4.207 22 C 0.113 3.887 23 O -0.343 6.343 24 C 0.021 3.979 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.280 0.720 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.067 -1.225 -14.275 14.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.023 4.023 4 N -0.199 5.199 5 C -0.469 4.469 6 H 0.103 0.897 7 C -0.169 4.169 8 N -0.529 5.529 9 Si 0.745 3.255 10 H -0.182 1.182 11 H -0.207 1.207 12 H -0.201 1.201 13 C 0.276 3.724 14 O -0.496 6.496 15 C -0.106 4.106 16 C -0.110 4.110 17 C -0.106 4.106 18 C -0.130 4.130 19 C -0.159 4.159 20 C -0.105 4.105 21 C -0.226 4.226 22 C 0.068 3.932 23 O -0.257 6.257 24 C -0.074 4.074 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.677 -1.156 -14.365 14.873 hybrid contribution -0.453 1.032 0.439 1.209 sum 3.224 -0.124 -13.926 14.295 Atomic orbital electron populations 1.21672 0.93234 1.02916 1.01991 1.21692 0.97533 0.95772 1.01314 1.21720 0.81912 0.98394 1.00236 1.43886 1.04640 1.65314 1.06031 1.18954 1.10612 1.26051 0.91313 0.89710 1.25765 0.98323 0.98419 0.94433 1.69820 1.45348 1.37434 1.00287 0.86253 0.80169 0.80493 0.78585 1.18206 1.20677 1.20084 1.20748 0.90469 0.78656 0.82503 1.90500 1.71113 1.55673 1.32336 1.20119 0.91970 1.04160 0.94363 1.19027 1.03930 0.92611 0.95437 1.20907 0.98087 0.95154 0.96464 1.20124 1.01832 0.97608 0.93443 1.20731 1.02090 0.91386 1.01710 1.21140 0.98259 0.90804 1.00319 1.21434 1.06566 1.00349 0.94240 1.19047 0.96192 0.84697 0.93305 1.86102 1.82475 1.14420 1.42713 1.23277 1.02443 0.87360 0.94270 0.90576 0.92477 0.92291 0.93006 0.92451 0.91916 0.92517 0.91008 0.88748 0.89475 0.85435 0.91096 0.89714 0.91251 0.82677 0.83232 0.90716 0.92162 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 9.91 71.98 0.71 -3.63 16 2 C -0.12 -4.98 6.21 30.59 0.19 -4.79 16 3 C 0.10 4.63 3.93 86.38 0.34 4.97 16 4 N -0.48 -24.25 2.18 -635.54 -1.39 -25.64 16 5 C -0.34 -18.46 9.05 84.04 0.76 -17.70 16 6 H 0.09 4.80 7.23 -2.91 -0.02 4.78 16 7 C 0.04 1.90 5.26 84.92 0.45 2.35 16 8 N -0.89 -49.90 13.96 21.66 0.30 -49.60 16 9 Si 0.92 43.15 25.06 68.60 1.72 44.87 16 10 H -0.26 -11.20 6.69 99.48 0.67 -10.53 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 13 C 0.49 24.22 7.58 87.66 0.66 24.88 16 14 O -0.61 -32.42 15.72 -3.08 -0.05 -32.46 16 15 C -0.07 -2.92 4.25 29.10 0.12 -2.79 16 16 C -0.11 -4.26 4.39 -19.77 -0.09 -4.35 16 17 C -0.09 -2.95 9.33 22.25 0.21 -2.74 16 18 C -0.13 -3.52 5.88 -19.85 -0.12 -3.64 16 19 C -0.10 -1.96 10.01 71.24 0.71 -1.24 16 20 C -0.09 -2.18 9.69 22.25 0.22 -1.97 16 21 C -0.21 -5.89 9.04 22.37 0.20 -5.68 16 22 C 0.11 4.11 6.66 22.51 0.15 4.26 16 23 O -0.34 -12.79 9.63 -92.40 -0.89 -13.68 16 24 C 0.02 0.51 9.81 113.37 1.11 1.63 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 30 H 0.06 2.92 3.65 -2.38 -0.01 2.91 16 31 H 0.06 2.65 7.62 -2.39 -0.02 2.63 16 32 H 0.28 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.09 3.91 7.58 -2.39 -0.02 3.89 16 34 H 0.09 3.98 7.64 -2.39 -0.02 3.96 16 35 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 38 H 0.07 1.24 8.08 -2.39 -0.02 1.22 16 39 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.15 3.27 6.30 -2.91 -0.02 3.25 16 41 H 0.07 1.45 7.68 -2.38 -0.02 1.43 16 42 H 0.06 1.35 7.65 -2.38 -0.02 1.33 16 43 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -68.26 351.39 6.28 -61.98 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 0.95 Total: 25.00 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 5.64 Total: -10.47 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -1.09 Total: -75.24 kcal Atomic # 8 Polarization: -45.21 SS G_CDS: -0.94 Total: -46.15 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.72 Total: 44.87 kcal Total: -68.26 6.28 -61.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060541899.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.472 kcal (2) G-P(sol) polarization free energy of solvation -68.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds