Wall clock time and date at job start Tue Mar 31 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47008 * 2 1 4 4 N 1.46503 * 109.46465 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99881 * 94.59448 * 4 3 2 6 6 H 1.08004 * 119.99488 * 304.02341 * 5 4 3 7 7 C 1.38942 * 120.00476 * 123.75478 * 5 4 3 8 8 N 1.31413 * 120.00161 * 344.73385 * 7 5 4 9 9 Si 1.86801 * 120.00365 * 164.73867 * 7 5 4 10 10 H 1.48503 * 109.47152 * 89.99576 * 9 7 5 11 11 H 1.48502 * 109.47265 * 209.99681 * 9 7 5 12 12 H 1.48502 * 109.46813 * 329.99858 * 9 7 5 13 13 C 1.34777 * 120.00045 * 274.58051 * 4 3 2 14 14 O 1.21292 * 119.99917 * 354.69266 * 13 4 3 15 15 C 1.50697 * 119.99874 * 174.69380 * 13 4 3 16 16 H 1.08998 * 109.47219 * 51.40141 * 15 13 4 17 17 C 1.52999 * 109.47062 * 291.40047 * 15 13 4 18 18 O 1.42907 * 109.46854 * 171.40150 * 15 13 4 19 19 C 1.35906 * 116.99583 * 203.95287 * 18 15 13 20 20 C 1.38732 * 120.05012 * 173.80820 * 19 18 15 21 21 C 1.38150 * 119.93885 * 179.69769 * 20 19 18 22 22 C 1.38266 * 120.05577 * 0.60136 * 21 20 19 23 23 C 1.50701 * 119.94275 * 179.69890 * 22 21 20 24 24 C 1.38268 * 120.11108 * 359.66952 * 22 21 20 25 25 C 1.38145 * 120.05444 * 0.03153 * 24 22 21 26 26 H 1.09009 * 109.47035 * 299.99760 * 1 2 3 27 27 H 1.08993 * 109.47260 * 59.99718 * 1 2 3 28 28 H 1.08993 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46818 * 240.00347 * 2 1 3 30 30 H 1.08997 * 109.47598 * 119.99906 * 2 1 3 31 31 H 1.09000 * 109.47048 * 60.00488 * 3 2 1 32 32 H 1.08996 * 109.46730 * 299.99816 * 3 2 1 33 33 H 0.96995 * 120.00430 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47035 * 185.55694 * 17 15 13 35 35 H 1.09003 * 109.47033 * 305.55029 * 17 15 13 36 36 H 1.08994 * 109.47457 * 65.54978 * 17 15 13 37 37 H 1.08000 * 120.03065 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.97088 * 180.27028 * 21 20 19 39 39 H 1.08995 * 109.47240 * 269.97637 * 23 22 21 40 40 H 1.09003 * 109.47303 * 29.97941 * 23 22 21 41 41 H 1.09004 * 109.46782 * 149.97441 * 23 22 21 42 42 H 1.08002 * 119.97358 * 180.02562 * 24 22 21 43 43 H 1.08003 * 120.02586 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1900 1.5377 -1.1844 6 1 4.0063 0.8234 -1.9735 7 6 5.1164 2.5562 -1.3711 8 7 5.1280 3.5906 -0.5606 9 14 6.3454 2.4554 -2.7743 10 1 5.7690 3.0954 -3.9841 11 1 7.5949 3.1595 -2.3895 12 1 6.6491 1.0311 -3.0649 13 6 4.1794 1.3490 1.1626 14 8 3.5773 1.3620 2.2154 15 6 5.6815 1.2283 1.1550 16 1 6.1066 2.0210 0.5394 17 6 6.0809 -0.1327 0.5814 18 8 6.1755 1.3458 2.4908 19 6 7.4623 1.7571 2.6388 20 6 7.9676 2.0166 3.9045 21 6 9.2779 2.4286 4.0527 22 6 10.0818 2.5943 2.9400 23 6 11.5087 3.0503 3.1042 24 6 9.5788 2.3417 1.6771 25 6 8.2711 1.9236 1.5240 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.7745 4.3018 -0.6912 34 1 7.1600 -0.2604 0.6667 35 1 5.5765 -0.9233 1.1369 36 1 5.7907 -0.1840 -0.4680 37 1 7.3385 1.8924 4.7735 38 1 9.6730 2.6265 5.0381 39 1 11.5485 4.1390 3.0692 40 1 11.8931 2.7033 4.0633 41 1 12.1167 2.6384 2.2986 42 1 10.2088 2.4715 0.8095 43 1 7.8786 1.7268 0.5372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:27 Heat of formation + Delta-G solvation = -57.403330 kcal Electronic energy + Delta-G solvation = -24145.812397 eV Core-core repulsion = 20770.167241 eV Total energy + Delta-G solvation = -3375.645156 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.92338 -38.62257 -36.98440 -34.91479 -33.57769 -31.86589 -31.19269 -30.89706 -30.09735 -26.14149 -25.99897 -24.83650 -23.18869 -22.40072 -21.15452 -20.50025 -19.39985 -17.60560 -17.19328 -15.60037 -15.22946 -15.03799 -14.99216 -14.73883 -14.36871 -14.06976 -13.82219 -13.69854 -13.39283 -13.22748 -13.12931 -12.55955 -12.22663 -12.12192 -11.89970 -11.76030 -11.57037 -11.35094 -11.29783 -11.19251 -11.15908 -11.07609 -10.89471 -10.63488 -10.48350 -10.28513 -10.11916 -9.93694 -8.96812 -8.67064 -8.27494 -7.57141 -7.35788 -6.54662 -4.42155 1.67897 1.79067 2.98718 3.09499 3.11292 3.63761 3.95525 4.02366 4.11677 4.75809 4.90782 5.10775 5.11132 5.29058 5.47340 5.58926 5.62177 5.66271 5.68953 5.74396 5.81627 5.89708 5.98417 6.00920 6.05310 6.17443 6.21956 6.35143 6.37436 6.42941 6.48046 6.54571 6.55372 6.68301 6.79785 6.84625 6.86058 6.89661 7.00339 7.18336 7.28304 7.85279 8.07488 8.50663 8.78524 9.45922 9.89949 10.48930 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.005501 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.132839 B = 5088.350194 C = 6236.651336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.452 5.452 5 C -0.345 4.345 6 H 0.084 0.916 7 C 0.046 3.954 8 N -0.854 5.854 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.276 1.276 12 H -0.262 1.262 13 C 0.526 3.474 14 O -0.587 6.587 15 C 0.070 3.930 16 H 0.123 0.877 17 C -0.167 4.167 18 O -0.294 6.294 19 C 0.147 3.853 20 C -0.157 4.157 21 C -0.083 4.083 22 C -0.143 4.143 23 C -0.103 4.103 24 C -0.080 4.080 25 C -0.205 4.205 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.274 0.726 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -3.089 1.159 7.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C -0.004 4.004 4 N -0.174 5.174 5 C -0.473 4.473 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.488 5.488 9 Si 0.721 3.279 10 H -0.196 1.196 11 H -0.201 1.201 12 H -0.186 1.186 13 C 0.315 3.685 14 O -0.471 6.471 15 C 0.012 3.988 16 H 0.140 0.860 17 C -0.225 4.225 18 O -0.206 6.206 19 C 0.100 3.900 20 C -0.176 4.176 21 C -0.102 4.102 22 C -0.144 4.144 23 C -0.160 4.160 24 C -0.098 4.098 25 C -0.224 4.224 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.136 0.864 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.471 -2.940 1.845 7.343 hybrid contribution 0.650 0.267 -1.101 1.307 sum 7.121 -2.673 0.744 7.643 Atomic orbital electron populations 1.21680 0.96361 1.00788 1.01448 1.21857 0.94884 0.98923 1.01765 1.21393 0.82938 0.94857 1.01252 1.43056 1.03188 1.65897 1.05210 1.19257 1.21487 1.12245 0.94343 0.89818 1.25728 0.99282 0.93785 0.97372 1.69982 1.34236 1.06833 1.37782 0.86394 0.80390 0.79405 0.81666 1.19636 1.20106 1.18570 1.19717 0.87589 0.77305 0.83908 1.90531 1.70201 1.54599 1.31729 1.22517 0.94845 1.00290 0.81194 0.86003 1.22238 1.00695 0.96083 1.03477 1.86122 1.23603 1.80295 1.30590 1.19154 0.84315 0.92646 0.93908 1.20414 0.96123 1.05640 0.95416 1.20719 0.92748 0.98644 0.98042 1.19691 0.96659 1.04787 0.93233 1.20645 0.92543 1.00893 1.01899 1.20770 0.94724 0.97783 0.96573 1.21401 0.95197 1.07027 0.98731 0.92955 0.92997 0.93374 0.92240 0.92319 0.92282 0.91413 0.91511 0.92697 0.92560 0.88855 0.85439 0.85973 0.91881 0.92096 0.92121 0.86368 0.85246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.14 -2.51 6.23 -26.73 -0.17 -2.67 16 3 C 0.12 2.60 5.38 -4.04 -0.02 2.58 16 4 N -0.45 -11.17 2.39 -114.81 -0.27 -11.45 16 5 C -0.35 -8.30 7.03 -14.94 -0.11 -8.41 16 6 H 0.08 1.92 7.88 -52.48 -0.41 1.51 16 7 C 0.05 1.09 3.60 -17.47 -0.06 1.03 16 8 N -0.85 -22.22 11.76 55.50 0.65 -21.57 16 9 Si 0.90 18.20 29.58 -169.99 -5.03 13.18 16 10 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 11 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 12 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 13 C 0.53 13.86 6.37 -10.99 -0.07 13.79 16 14 O -0.59 -16.98 16.15 -14.21 -0.23 -17.21 16 15 C 0.07 1.66 1.82 -27.88 -0.05 1.61 16 16 H 0.12 2.98 3.06 -51.93 -0.16 2.82 16 17 C -0.17 -3.37 8.90 37.16 0.33 -3.04 16 18 O -0.29 -6.98 9.35 -39.21 -0.37 -7.34 16 19 C 0.15 3.00 6.57 -39.22 -0.26 2.74 16 20 C -0.16 -2.77 9.99 -39.43 -0.39 -3.17 16 21 C -0.08 -1.24 9.69 -39.60 -0.38 -1.62 16 22 C -0.14 -2.08 5.88 -104.60 -0.62 -2.70 16 23 C -0.10 -1.11 10.01 36.01 0.36 -0.75 16 24 C -0.08 -1.29 9.69 -39.60 -0.38 -1.67 16 25 C -0.20 -3.87 8.16 -39.44 -0.32 -4.19 16 26 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.37 7.50 -51.93 -0.39 0.98 16 32 H 0.07 1.42 8.00 -51.93 -0.42 1.00 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.05 0.98 6.84 -51.93 -0.36 0.63 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.09 1.85 6.56 -51.93 -0.34 1.51 16 37 H 0.13 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 41 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 43 H 0.13 2.52 5.45 -52.48 -0.29 2.23 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -29.55 350.71 -8.30 -37.85 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -6.56 Total: 9.51 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.77 Total: -8.25 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 0.38 Total: -33.02 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.60 Total: -24.56 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.55 -8.30 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.556 kcal (2) G-P(sol) polarization free energy of solvation -29.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds