Wall clock time and date at job start Tue Mar 31 2020 06:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47008 * 2 1 4 4 N 1.46503 * 109.46465 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99881 * 94.59448 * 4 3 2 6 6 H 1.08004 * 119.99488 * 304.02341 * 5 4 3 7 7 C 1.38942 * 120.00476 * 123.75478 * 5 4 3 8 8 N 1.31413 * 120.00161 * 344.73385 * 7 5 4 9 9 Si 1.86801 * 120.00365 * 164.73867 * 7 5 4 10 10 H 1.48503 * 109.47152 * 89.99576 * 9 7 5 11 11 H 1.48502 * 109.47265 * 209.99681 * 9 7 5 12 12 H 1.48502 * 109.46813 * 329.99858 * 9 7 5 13 13 C 1.34777 * 120.00045 * 274.58051 * 4 3 2 14 14 O 1.21292 * 119.99917 * 354.69266 * 13 4 3 15 15 C 1.50697 * 119.99874 * 174.69380 * 13 4 3 16 16 H 1.08998 * 109.47219 * 51.40141 * 15 13 4 17 17 C 1.52999 * 109.47062 * 291.40047 * 15 13 4 18 18 O 1.42907 * 109.46854 * 171.40150 * 15 13 4 19 19 C 1.35906 * 116.99583 * 203.95287 * 18 15 13 20 20 C 1.38732 * 120.05012 * 173.80820 * 19 18 15 21 21 C 1.38150 * 119.93885 * 179.69769 * 20 19 18 22 22 C 1.38266 * 120.05577 * 0.60136 * 21 20 19 23 23 C 1.50701 * 119.94275 * 179.69890 * 22 21 20 24 24 C 1.38268 * 120.11108 * 359.66952 * 22 21 20 25 25 C 1.38145 * 120.05444 * 0.03153 * 24 22 21 26 26 H 1.09009 * 109.47035 * 299.99760 * 1 2 3 27 27 H 1.08993 * 109.47260 * 59.99718 * 1 2 3 28 28 H 1.08993 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46818 * 240.00347 * 2 1 3 30 30 H 1.08997 * 109.47598 * 119.99906 * 2 1 3 31 31 H 1.09000 * 109.47048 * 60.00488 * 3 2 1 32 32 H 1.08996 * 109.46730 * 299.99816 * 3 2 1 33 33 H 0.96995 * 120.00430 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47035 * 185.55694 * 17 15 13 35 35 H 1.09003 * 109.47033 * 305.55029 * 17 15 13 36 36 H 1.08994 * 109.47457 * 65.54978 * 17 15 13 37 37 H 1.08000 * 120.03065 * 359.97438 * 20 19 18 38 38 H 1.07996 * 119.97088 * 180.27028 * 21 20 19 39 39 H 1.08995 * 109.47240 * 269.97637 * 23 22 21 40 40 H 1.09003 * 109.47303 * 29.97941 * 23 22 21 41 41 H 1.09004 * 109.46782 * 149.97441 * 23 22 21 42 42 H 1.08002 * 119.97358 * 180.02562 * 24 22 21 43 43 H 1.08003 * 120.02586 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1900 1.5377 -1.1844 6 1 4.0063 0.8234 -1.9735 7 6 5.1164 2.5562 -1.3711 8 7 5.1280 3.5906 -0.5606 9 14 6.3454 2.4554 -2.7743 10 1 5.7690 3.0954 -3.9841 11 1 7.5949 3.1595 -2.3895 12 1 6.6491 1.0311 -3.0649 13 6 4.1794 1.3490 1.1626 14 8 3.5773 1.3620 2.2154 15 6 5.6815 1.2283 1.1550 16 1 6.1066 2.0210 0.5394 17 6 6.0809 -0.1327 0.5814 18 8 6.1755 1.3458 2.4908 19 6 7.4623 1.7571 2.6388 20 6 7.9676 2.0166 3.9045 21 6 9.2779 2.4286 4.0527 22 6 10.0818 2.5943 2.9400 23 6 11.5087 3.0503 3.1042 24 6 9.5788 2.3417 1.6771 25 6 8.2711 1.9236 1.5240 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 5.7745 4.3018 -0.6912 34 1 7.1600 -0.2604 0.6667 35 1 5.5765 -0.9233 1.1369 36 1 5.7907 -0.1840 -0.4680 37 1 7.3385 1.8924 4.7735 38 1 9.6730 2.6265 5.0381 39 1 11.5485 4.1390 3.0692 40 1 11.8931 2.7033 4.0633 41 1 12.1167 2.6384 2.2986 42 1 10.2088 2.4715 0.8095 43 1 7.8786 1.7268 0.5372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542070.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:27 Heat of formation + Delta-G solvation = -72.103201 kcal Electronic energy + Delta-G solvation = -24146.449831 eV Core-core repulsion = 20770.167241 eV Total energy + Delta-G solvation = -3376.282590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52568 -40.33273 -38.49771 -36.86713 -35.23929 -33.25076 -32.94176 -32.27365 -31.55133 -27.68311 -27.33493 -26.65426 -24.76619 -23.78438 -22.61190 -21.96920 -21.23606 -19.21912 -18.94951 -17.40840 -16.92246 -16.78467 -16.48835 -16.24555 -15.93427 -15.58069 -15.38371 -15.17560 -14.77813 -14.54643 -14.38767 -14.01505 -13.94043 -13.56968 -13.32793 -13.23875 -13.07514 -12.96098 -12.84526 -12.74618 -12.56425 -12.45535 -12.36794 -12.17573 -12.05850 -11.73138 -11.67135 -11.55026 -10.82779 -10.25203 -9.95482 -9.31265 -8.94476 -8.41541 -6.36546 0.37964 0.47095 1.37293 1.43488 1.54928 1.92335 2.10922 2.29053 2.80172 2.90792 3.17156 3.86167 3.94478 4.01289 4.08332 4.12735 4.15096 4.29173 4.38699 4.40519 4.45073 4.50724 4.63767 4.69722 4.76838 4.80928 4.83727 4.91051 4.92461 5.04304 5.09438 5.14459 5.17844 5.21352 5.29174 5.38361 5.38930 5.43867 5.47099 5.67297 5.92559 5.97255 6.51837 6.57840 6.90561 7.49271 7.96175 8.63056 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.005501 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.132839 B = 5088.350194 C = 6236.651336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.112 3.888 4 N -0.455 5.455 5 C -0.357 4.357 6 H 0.098 0.902 7 C 0.012 3.988 8 N -0.892 5.892 9 Si 0.958 3.042 10 H -0.268 1.268 11 H -0.276 1.276 12 H -0.243 1.243 13 C 0.506 3.494 14 O -0.631 6.631 15 C 0.075 3.925 16 H 0.114 0.886 17 C -0.156 4.156 18 O -0.326 6.326 19 C 0.104 3.896 20 C -0.170 4.170 21 C -0.078 4.078 22 C -0.132 4.132 23 C -0.102 4.102 24 C -0.086 4.086 25 C -0.218 4.218 26 H 0.048 0.952 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.274 0.726 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.160 0.840 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.143 0.857 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.284 -3.418 0.113 9.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C -0.011 4.011 4 N -0.175 5.175 5 C -0.484 4.484 6 H 0.115 0.885 7 C -0.192 4.192 8 N -0.528 5.528 9 Si 0.779 3.221 10 H -0.193 1.193 11 H -0.201 1.201 12 H -0.166 1.166 13 C 0.295 3.705 14 O -0.518 6.518 15 C 0.016 3.984 16 H 0.131 0.869 17 C -0.214 4.214 18 O -0.240 6.240 19 C 0.058 3.942 20 C -0.188 4.188 21 C -0.095 4.095 22 C -0.133 4.133 23 C -0.158 4.158 24 C -0.104 4.104 25 C -0.237 4.237 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.146 0.854 38 H 0.177 0.823 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.161 0.839 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.893 -3.284 0.771 9.511 hybrid contribution -0.053 0.453 -0.719 0.852 sum 8.840 -2.830 0.052 9.282 Atomic orbital electron populations 1.21637 0.93230 1.02585 1.02076 1.21731 0.97531 0.95981 1.01002 1.21576 0.81891 0.97226 1.00377 1.43335 1.04321 1.64594 1.05243 1.19615 1.21938 1.12769 0.94081 0.88486 1.26487 1.00307 0.92896 0.99483 1.70106 1.35057 1.07771 1.39850 0.85465 0.77875 0.80385 0.78391 1.19299 1.20054 1.16572 1.20398 0.89096 0.77197 0.83784 1.90473 1.71311 1.56884 1.33101 1.22380 0.92836 1.01546 0.81616 0.86905 1.22153 1.01898 0.94204 1.03111 1.86051 1.25823 1.81645 1.30465 1.19551 0.83513 0.95457 0.95657 1.20683 0.97642 1.06002 0.94507 1.21157 0.91327 0.96923 1.00119 1.20221 0.98525 1.02223 0.92299 1.20738 0.89739 1.01635 1.03698 1.21121 0.93736 0.97095 0.98450 1.21404 0.96459 1.08187 0.97627 0.93267 0.91461 0.90975 0.91414 0.94520 0.94645 0.90603 0.91611 0.90701 0.92780 0.88606 0.85437 0.82278 0.90706 0.90041 0.90705 0.83891 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.91 71.98 0.71 -3.21 16 2 C -0.12 -4.61 6.23 30.60 0.19 -4.42 16 3 C 0.11 5.07 5.38 86.38 0.46 5.54 16 4 N -0.45 -23.24 2.39 -635.53 -1.52 -24.76 16 5 C -0.36 -17.27 7.03 84.04 0.59 -16.68 16 6 H 0.10 4.38 7.88 -2.91 -0.02 4.35 16 7 C 0.01 0.59 3.60 84.92 0.31 0.90 16 8 N -0.89 -47.62 11.76 21.66 0.25 -47.37 16 9 Si 0.96 36.60 29.58 68.60 2.03 38.63 16 10 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 11 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 12 H -0.24 -8.50 7.11 99.48 0.71 -7.79 16 13 C 0.51 27.97 6.37 87.66 0.56 28.53 16 14 O -0.63 -38.82 16.15 15.83 0.26 -38.57 16 15 C 0.07 3.69 1.82 29.85 0.05 3.74 16 16 H 0.11 5.73 3.06 -2.39 -0.01 5.72 16 17 C -0.16 -6.41 8.90 71.98 0.64 -5.77 16 18 O -0.33 -16.34 9.35 -73.60 -0.69 -17.03 16 19 C 0.10 4.37 6.57 22.50 0.15 4.51 16 20 C -0.17 -6.02 9.99 22.37 0.22 -5.79 16 21 C -0.08 -2.12 9.69 22.26 0.22 -1.90 16 22 C -0.13 -3.43 5.88 -19.85 -0.12 -3.55 16 23 C -0.10 -1.72 10.01 71.24 0.71 -1.01 16 24 C -0.09 -2.59 9.69 22.25 0.22 -2.38 16 25 C -0.22 -8.27 8.16 22.36 0.18 -8.09 16 26 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.04 1.74 7.50 -2.39 -0.02 1.72 16 32 H 0.08 3.24 8.00 -2.39 -0.02 3.22 16 33 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 34 H 0.07 2.70 6.84 -2.39 -0.02 2.69 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.10 3.80 6.56 -2.39 -0.02 3.79 16 37 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.09 8.08 -2.39 -0.02 1.08 16 41 H 0.07 1.10 8.08 -2.39 -0.02 1.08 16 42 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 43 H 0.12 4.61 5.45 -2.91 -0.02 4.59 16 Total: -1.00 -67.74 350.71 6.42 -61.32 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.99 Total: 37.37 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 5.10 Total: -9.58 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.27 Total: -72.13 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.43 Total: -55.60 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -67.74 6.42 -61.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542070.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.785 kcal (2) G-P(sol) polarization free energy of solvation -67.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds