Wall clock time and date at job start Tue Mar 31 2020 06:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 N 1.46498 * 109.47154 * 180.02562 * 3 2 1 5 5 C 1.37094 * 119.99789 * 269.99776 * 4 3 2 6 6 H 1.08001 * 120.00110 * 143.06355 * 5 4 3 7 7 C 1.38955 * 120.00413 * 323.05866 * 5 4 3 8 8 N 1.31415 * 119.99684 * 338.26533 * 7 5 4 9 9 Si 1.86801 * 120.00170 * 158.26354 * 7 5 4 10 10 H 1.48499 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47235 * 120.00261 * 9 7 5 12 12 H 1.48498 * 109.47145 * 240.00265 * 9 7 5 13 13 C 1.34772 * 119.99960 * 90.00323 * 4 3 2 14 14 O 1.21288 * 120.00148 * 355.09493 * 13 4 3 15 15 C 1.50708 * 119.99974 * 175.09659 * 13 4 3 16 16 O 1.42901 * 109.46849 * 180.62209 * 15 13 4 17 17 C 1.35904 * 116.99159 * 181.91208 * 16 15 13 18 18 C 1.38750 * 120.06220 * 5.60651 * 17 16 15 19 19 C 1.38122 * 119.94501 * 179.97438 * 18 17 16 20 20 C 1.38282 * 120.05864 * 0.02562 * 19 18 17 21 21 C 1.38246 * 120.10951 * 359.97438 * 20 19 18 22 22 C 1.38169 * 120.05666 * 0.02562 * 21 20 19 23 23 C 1.50701 * 120.02602 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46700 * 264.97182 * 23 22 21 25 25 H 1.09006 * 109.47047 * 59.99568 * 1 2 3 26 26 H 1.08996 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47098 * 300.00182 * 1 2 3 28 28 H 1.09000 * 109.47235 * 240.00212 * 2 1 3 29 29 H 1.09004 * 109.47106 * 119.99894 * 2 1 3 30 30 H 1.09000 * 109.46765 * 59.99924 * 3 2 1 31 31 H 1.09004 * 109.46916 * 300.00010 * 3 2 1 32 32 H 0.96997 * 119.99718 * 185.04906 * 8 7 5 33 33 H 1.09002 * 109.46637 * 60.62654 * 15 13 4 34 34 H 1.08992 * 109.46945 * 300.62885 * 15 13 4 35 35 H 1.08004 * 120.02696 * 359.95116 * 18 17 16 36 36 H 1.08000 * 119.97118 * 179.72344 * 19 18 17 37 37 H 1.07995 * 119.95095 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.97276 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47503 * 24.97615 * 23 22 21 40 40 H 1.09008 * 109.46811 * 144.97530 * 23 22 21 41 41 H 1.08995 * 109.47165 * 60.00932 * 24 23 22 42 42 H 1.09006 * 109.46829 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47630 * 299.99944 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.1084 0.8802 1.2798 7 6 3.7059 2.1654 2.2693 8 7 2.8720 3.1620 2.0734 9 14 4.2392 1.7209 4.0035 10 1 5.1761 0.5698 3.9536 11 1 4.9190 2.8852 4.6261 12 1 3.0469 1.3547 4.8094 13 6 4.1784 1.4427 -1.1681 14 8 3.5749 1.3531 -2.2163 15 6 5.6813 1.5542 -1.1711 16 8 6.1568 1.5467 -2.5186 17 6 7.5028 1.6004 -2.6981 18 6 8.3529 1.5418 -1.6031 19 6 9.7206 1.5960 -1.7883 20 6 10.2429 1.7092 -3.0637 21 6 9.3980 1.7678 -4.1564 22 6 8.0292 1.7139 -3.9765 23 6 7.1089 1.7773 -5.1682 24 6 6.6553 3.2222 -5.3859 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.5906 3.7129 2.8205 33 1 6.1093 0.7102 -0.6301 34 1 5.9776 2.4843 -0.6863 35 1 7.9455 1.4542 -0.6067 36 1 10.3825 1.5549 -0.9360 37 1 11.3125 1.7511 -3.2066 38 1 9.8083 1.8567 -5.1515 39 1 7.6368 1.4247 -6.0541 40 1 6.2383 1.1463 -4.9888 41 1 7.5258 3.8532 -5.5653 42 1 5.9893 3.2680 -6.2476 43 1 6.1273 3.5748 -4.4999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:48 Heat of formation + Delta-G solvation = -61.589156 kcal Electronic energy + Delta-G solvation = -23479.420613 eV Core-core repulsion = 20103.593947 eV Total energy + Delta-G solvation = -3375.826667 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.04120 -38.59871 -36.92387 -35.04934 -33.92461 -32.88551 -31.42302 -29.97178 -29.23332 -27.72280 -25.68529 -24.36777 -23.67986 -22.04095 -20.83229 -20.68139 -19.21745 -17.71984 -17.19302 -15.93863 -15.59541 -15.50919 -15.47629 -14.69560 -14.38427 -14.22134 -13.81970 -13.75336 -13.43453 -13.41859 -12.97989 -12.80264 -12.39830 -12.11942 -11.85587 -11.61399 -11.55755 -11.44177 -11.33221 -11.28161 -11.03667 -10.73672 -10.68195 -10.54206 -10.46695 -10.36065 -10.25308 -9.78283 -9.22633 -8.67634 -8.49328 -7.83977 -7.59621 -6.50338 -4.20604 1.49130 1.65273 3.01180 3.13861 3.16643 3.42755 3.77297 3.94099 4.02209 4.80166 4.84967 4.92159 5.02534 5.20988 5.35734 5.41153 5.59902 5.65508 5.74837 5.76484 5.78345 5.78676 5.88486 5.92867 6.01528 6.08865 6.17876 6.19205 6.33202 6.46305 6.51644 6.52593 6.57514 6.64451 6.65700 6.73919 6.79251 6.99943 7.06211 7.25237 7.40591 7.78668 7.82111 8.24998 8.94974 9.37880 9.81509 10.50923 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.004662 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.910171 B = 6004.945435 C = 7296.549542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.117 3.883 4 N -0.433 5.433 5 C -0.353 4.353 6 H 0.089 0.911 7 C 0.050 3.950 8 N -0.854 5.854 9 Si 0.914 3.086 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.472 3.528 14 O -0.586 6.586 15 C 0.061 3.939 16 O -0.289 6.289 17 C 0.142 3.858 18 C -0.210 4.210 19 C -0.086 4.086 20 C -0.167 4.167 21 C -0.085 4.085 22 C -0.117 4.117 23 C -0.075 4.075 24 C -0.142 4.142 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.272 0.728 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.476 -2.079 -5.210 10.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.152 5.152 5 C -0.481 4.481 6 H 0.106 0.894 7 C -0.158 4.158 8 N -0.489 5.489 9 Si 0.740 3.260 10 H -0.191 1.191 11 H -0.206 1.206 12 H -0.203 1.203 13 C 0.259 3.741 14 O -0.470 6.470 15 C -0.017 4.017 16 O -0.200 6.200 17 C 0.095 3.905 18 C -0.228 4.228 19 C -0.104 4.104 20 C -0.185 4.185 21 C -0.103 4.103 22 C -0.118 4.118 23 C -0.112 4.112 24 C -0.200 4.200 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.822 -2.015 -5.732 9.904 hybrid contribution 0.476 -0.121 1.462 1.542 sum 8.297 -2.136 -4.270 9.573 Atomic orbital electron populations 1.21659 0.96542 1.00501 1.01401 1.21825 0.94713 0.99324 1.01406 1.21462 0.80785 0.94833 1.03506 1.43335 1.04847 1.63128 1.03908 1.19446 1.09897 1.30792 0.87915 0.89353 1.25395 0.96231 0.93744 1.00388 1.69868 1.32220 1.14199 1.32610 0.86084 0.78834 0.78911 0.82179 1.19064 1.20557 1.20279 1.19823 0.87771 0.81909 0.84558 1.90565 1.69752 1.55028 1.31682 1.22426 0.95374 1.02949 0.80935 1.86147 1.17647 1.87285 1.28962 1.18999 0.83191 0.94769 0.93535 1.21388 0.94345 1.08377 0.98734 1.20889 0.94356 0.98015 0.97119 1.20934 0.99367 1.05534 0.92677 1.20805 0.91765 0.98909 0.98801 1.19277 0.94079 1.05759 0.92687 1.20344 0.98456 0.98217 0.94219 1.21684 1.00602 0.95677 1.02016 0.93105 0.93579 0.92991 0.92863 0.92245 0.87655 0.92745 0.91721 0.90534 0.89459 0.85072 0.86163 0.86417 0.85904 0.91767 0.90240 0.93288 0.92721 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 37.16 0.37 -2.04 16 2 C -0.13 -2.74 6.26 -26.73 -0.17 -2.91 16 3 C 0.12 2.77 4.97 -4.04 -0.02 2.75 16 4 N -0.43 -10.72 2.52 -114.81 -0.29 -11.01 16 5 C -0.35 -8.57 8.59 -14.93 -0.13 -8.70 16 6 H 0.09 2.03 7.10 -52.49 -0.37 1.66 16 7 C 0.05 1.20 4.95 -17.46 -0.09 1.12 16 8 N -0.85 -21.67 11.44 55.50 0.63 -21.03 16 9 Si 0.91 18.56 29.61 -169.99 -5.03 13.53 16 10 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 13 C 0.47 11.68 7.70 -10.98 -0.08 11.60 16 14 O -0.59 -15.96 16.13 -14.36 -0.23 -16.19 16 15 C 0.06 1.27 4.01 36.01 0.14 1.42 16 16 O -0.29 -5.93 8.81 -39.35 -0.35 -6.27 16 17 C 0.14 2.48 6.65 -39.22 -0.26 2.22 16 18 C -0.21 -3.27 9.07 -39.43 -0.36 -3.63 16 19 C -0.09 -1.13 10.04 -39.61 -0.40 -1.53 16 20 C -0.17 -2.05 10.04 -39.56 -0.40 -2.44 16 21 C -0.08 -1.09 9.68 -39.60 -0.38 -1.48 16 22 C -0.12 -1.80 5.15 -104.47 -0.54 -2.34 16 23 C -0.08 -1.08 5.79 -27.88 -0.16 -1.24 16 24 C -0.14 -1.98 9.89 37.16 0.37 -1.61 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.11 2.61 5.49 -51.93 -0.29 2.33 16 31 H 0.05 1.34 7.49 -51.93 -0.39 0.95 16 32 H 0.27 6.49 8.32 -40.82 -0.34 6.15 16 33 H 0.08 1.46 6.74 -51.93 -0.35 1.11 16 34 H 0.09 1.78 7.99 -51.93 -0.41 1.36 16 35 H 0.13 1.98 6.30 -52.48 -0.33 1.65 16 36 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 40 H 0.08 1.31 7.69 -51.92 -0.40 0.91 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -28.69 357.00 -8.73 -37.42 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.75 Total: 7.01 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.10 Total: -8.83 kcal Atomic # 7 Polarization: -32.39 SS G_CDS: 0.34 Total: -32.05 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.58 Total: -22.47 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.69 -8.73 -37.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -28.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds