Wall clock time and date at job start Tue Mar 31 2020 06:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 N 1.46498 * 109.47154 * 180.02562 * 3 2 1 5 5 C 1.37094 * 119.99789 * 269.99776 * 4 3 2 6 6 H 1.08001 * 120.00110 * 143.06355 * 5 4 3 7 7 C 1.38955 * 120.00413 * 323.05866 * 5 4 3 8 8 N 1.31415 * 119.99684 * 338.26533 * 7 5 4 9 9 Si 1.86801 * 120.00170 * 158.26354 * 7 5 4 10 10 H 1.48499 * 109.47209 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47235 * 120.00261 * 9 7 5 12 12 H 1.48498 * 109.47145 * 240.00265 * 9 7 5 13 13 C 1.34772 * 119.99960 * 90.00323 * 4 3 2 14 14 O 1.21288 * 120.00148 * 355.09493 * 13 4 3 15 15 C 1.50708 * 119.99974 * 175.09659 * 13 4 3 16 16 O 1.42901 * 109.46849 * 180.62209 * 15 13 4 17 17 C 1.35904 * 116.99159 * 181.91208 * 16 15 13 18 18 C 1.38750 * 120.06220 * 5.60651 * 17 16 15 19 19 C 1.38122 * 119.94501 * 179.97438 * 18 17 16 20 20 C 1.38282 * 120.05864 * 0.02562 * 19 18 17 21 21 C 1.38246 * 120.10951 * 359.97438 * 20 19 18 22 22 C 1.38169 * 120.05666 * 0.02562 * 21 20 19 23 23 C 1.50701 * 120.02602 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.46700 * 264.97182 * 23 22 21 25 25 H 1.09006 * 109.47047 * 59.99568 * 1 2 3 26 26 H 1.08996 * 109.47433 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47098 * 300.00182 * 1 2 3 28 28 H 1.09000 * 109.47235 * 240.00212 * 2 1 3 29 29 H 1.09004 * 109.47106 * 119.99894 * 2 1 3 30 30 H 1.09000 * 109.46765 * 59.99924 * 3 2 1 31 31 H 1.09004 * 109.46916 * 300.00010 * 3 2 1 32 32 H 0.96997 * 119.99718 * 185.04906 * 8 7 5 33 33 H 1.09002 * 109.46637 * 60.62654 * 15 13 4 34 34 H 1.08992 * 109.46945 * 300.62885 * 15 13 4 35 35 H 1.08004 * 120.02696 * 359.95116 * 18 17 16 36 36 H 1.08000 * 119.97118 * 179.72344 * 19 18 17 37 37 H 1.07995 * 119.95095 * 180.02562 * 20 19 18 38 38 H 1.08000 * 119.97276 * 179.97438 * 21 20 19 39 39 H 1.08993 * 109.47503 * 24.97615 * 23 22 21 40 40 H 1.09008 * 109.46811 * 144.97530 * 23 22 21 41 41 H 1.08995 * 109.47165 * 60.00932 * 24 23 22 42 42 H 1.09006 * 109.46829 * 180.02562 * 24 23 22 43 43 H 1.08997 * 109.47630 * 299.99944 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1910 1.4423 1.1864 6 1 5.1084 0.8802 1.2798 7 6 3.7059 2.1654 2.2693 8 7 2.8720 3.1620 2.0734 9 14 4.2392 1.7209 4.0035 10 1 5.1761 0.5698 3.9536 11 1 4.9190 2.8852 4.6261 12 1 3.0469 1.3547 4.8094 13 6 4.1784 1.4427 -1.1681 14 8 3.5749 1.3531 -2.2163 15 6 5.6813 1.5542 -1.1711 16 8 6.1568 1.5467 -2.5186 17 6 7.5028 1.6004 -2.6981 18 6 8.3529 1.5418 -1.6031 19 6 9.7206 1.5960 -1.7883 20 6 10.2429 1.7092 -3.0637 21 6 9.3980 1.7678 -4.1564 22 6 8.0292 1.7139 -3.9765 23 6 7.1089 1.7773 -5.1682 24 6 6.6553 3.2222 -5.3859 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 2.5906 3.7129 2.8205 33 1 6.1093 0.7102 -0.6301 34 1 5.9776 2.4843 -0.6863 35 1 7.9455 1.4542 -0.6067 36 1 10.3825 1.5549 -0.9360 37 1 11.3125 1.7511 -3.2066 38 1 9.8083 1.8567 -5.1515 39 1 7.6368 1.4247 -6.0541 40 1 6.2383 1.1463 -4.9888 41 1 7.5258 3.8532 -5.5653 42 1 5.9893 3.2680 -6.2476 43 1 6.1273 3.5748 -4.4999 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:47 Heat of formation + Delta-G solvation = -74.774128 kcal Electronic energy + Delta-G solvation = -23479.992357 eV Core-core repulsion = 20103.593947 eV Total energy + Delta-G solvation = -3376.398410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39095 -40.35490 -38.30421 -36.96151 -35.03998 -34.59809 -33.31171 -31.11397 -30.50939 -29.20381 -27.48992 -26.10966 -24.79979 -23.30813 -22.35662 -21.95481 -21.09181 -19.08833 -18.94418 -17.67289 -17.21359 -16.93511 -16.70069 -16.37957 -16.05500 -15.53188 -15.39857 -15.23578 -14.84450 -14.64826 -14.36703 -14.18313 -13.86727 -13.56267 -13.29303 -13.25107 -13.05717 -12.91779 -12.72044 -12.65160 -12.44104 -12.38012 -12.12443 -12.02059 -11.94566 -11.72737 -11.56576 -11.52370 -11.09534 -10.44471 -9.75537 -9.54191 -9.05018 -8.37251 -6.14815 0.41156 0.52795 1.37626 1.48029 1.59939 1.83355 1.95999 2.31918 2.84686 2.96575 3.15712 3.80975 3.91888 3.99017 4.10693 4.16717 4.21625 4.31890 4.32557 4.34063 4.43721 4.52091 4.53038 4.57834 4.67634 4.74895 4.82590 4.93448 4.98453 5.06251 5.10661 5.18067 5.22155 5.32413 5.37092 5.38966 5.49143 5.52306 5.58891 5.63754 5.91210 5.93882 6.32716 6.48952 7.03984 7.44945 7.89648 8.65616 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.004662 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.910171 B = 6004.945435 C = 7296.549542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.116 3.884 4 N -0.439 5.439 5 C -0.370 4.370 6 H 0.100 0.900 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.985 3.015 10 H -0.256 1.256 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.453 3.547 14 O -0.623 6.623 15 C 0.079 3.921 16 O -0.315 6.315 17 C 0.100 3.900 18 C -0.223 4.223 19 C -0.088 4.088 20 C -0.155 4.155 21 C -0.081 4.081 22 C -0.132 4.132 23 C -0.074 4.074 24 C -0.138 4.138 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.277 0.723 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.127 0.873 36 H 0.148 0.852 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.040 -2.704 -4.733 12.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.007 4.007 4 N -0.158 5.158 5 C -0.496 4.496 6 H 0.117 0.883 7 C -0.193 4.193 8 N -0.522 5.522 9 Si 0.808 3.192 10 H -0.180 1.180 11 H -0.202 1.202 12 H -0.202 1.202 13 C 0.242 3.758 14 O -0.510 6.510 15 C 0.001 3.999 16 O -0.229 6.229 17 C 0.055 3.945 18 C -0.241 4.241 19 C -0.106 4.106 20 C -0.173 4.173 21 C -0.099 4.099 22 C -0.132 4.132 23 C -0.111 4.111 24 C -0.195 4.195 25 H 0.070 0.930 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.166 0.834 37 H 0.173 0.827 38 H 0.175 0.825 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 10.399 -2.643 -5.249 11.945 hybrid contribution -0.234 0.124 1.251 1.278 sum 10.164 -2.519 -3.999 11.209 Atomic orbital electron populations 1.21615 0.93502 1.02455 1.01790 1.21719 0.97347 0.96668 1.00570 1.21468 0.80745 0.96706 1.01760 1.43619 1.05392 1.62413 1.04342 1.19814 1.10578 1.31389 0.87869 0.88263 1.26249 0.95986 0.93075 1.03939 1.69969 1.33237 1.15088 1.33951 0.85013 0.78498 0.78830 0.76907 1.17951 1.20233 1.20163 1.20529 0.89597 0.81599 0.84083 1.90515 1.70921 1.56799 1.32812 1.22095 0.92625 1.03250 0.81906 1.86096 1.20085 1.88478 1.28192 1.19415 0.81987 0.97770 0.95327 1.21513 0.95574 1.09011 0.98053 1.21267 0.93436 0.96962 0.98902 1.21422 1.01228 1.02833 0.91812 1.21215 0.90431 0.97394 1.00839 1.19579 0.95547 1.06093 0.92000 1.20347 0.97597 0.97795 0.95389 1.21645 1.01301 0.95815 1.00762 0.92974 0.90811 0.92370 0.94327 0.92246 0.88687 0.94906 0.91353 0.89138 0.89682 0.85479 0.83395 0.82663 0.82546 0.88550 0.93510 0.91200 0.91555 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.49 9.91 71.98 0.71 -3.77 16 2 C -0.12 -5.19 6.26 30.59 0.19 -5.00 16 3 C 0.12 5.74 4.97 86.38 0.43 6.17 16 4 N -0.44 -22.65 2.52 -635.53 -1.60 -24.25 16 5 C -0.37 -18.22 8.59 84.04 0.72 -17.50 16 6 H 0.10 4.58 7.10 -2.91 -0.02 4.56 16 7 C 0.01 0.59 4.95 84.93 0.42 1.01 16 8 N -0.89 -45.69 11.44 21.66 0.25 -45.44 16 9 Si 0.98 37.51 29.61 68.60 2.03 39.54 16 10 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 11 H -0.28 -10.38 7.11 99.48 0.71 -9.67 16 12 H -0.28 -10.45 7.11 99.48 0.71 -9.74 16 13 C 0.45 23.68 7.70 87.66 0.67 24.36 16 14 O -0.62 -36.18 16.13 15.98 0.26 -35.93 16 15 C 0.08 3.47 4.01 71.24 0.29 3.76 16 16 O -0.32 -13.76 8.81 -73.43 -0.65 -14.41 16 17 C 0.10 3.59 6.65 22.51 0.15 3.74 16 18 C -0.22 -6.89 9.07 22.36 0.20 -6.68 16 19 C -0.09 -2.09 10.04 22.25 0.22 -1.86 16 20 C -0.16 -3.18 10.04 22.28 0.22 -2.96 16 21 C -0.08 -1.83 9.68 22.26 0.22 -1.62 16 22 C -0.13 -3.97 5.15 -19.77 -0.10 -4.07 16 23 C -0.07 -2.13 5.79 29.85 0.17 -1.95 16 24 C -0.14 -3.87 9.89 71.98 0.71 -3.15 16 25 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.10 4.88 5.49 -2.39 -0.01 4.87 16 31 H 0.03 1.71 7.49 -2.39 -0.02 1.69 16 32 H 0.28 13.29 8.32 -92.71 -0.77 12.51 16 33 H 0.09 3.60 6.74 -2.39 -0.02 3.58 16 34 H 0.09 3.67 7.99 -2.39 -0.02 3.65 16 35 H 0.13 3.88 6.30 -2.91 -0.02 3.86 16 36 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 37 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.16 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.10 2.09 8.05 -2.39 -0.02 2.07 16 40 H 0.05 1.63 7.69 -2.38 -0.02 1.61 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -65.31 357.00 6.50 -58.81 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.98 Total: 31.22 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 5.24 Total: -9.54 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -1.36 Total: -69.69 kcal Atomic # 8 Polarization: -49.95 SS G_CDS: -0.39 Total: -50.33 kcal Atomic # 14 Polarization: 37.51 SS G_CDS: 2.03 Total: 39.54 kcal Total: -65.31 6.50 -58.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.963 kcal (2) G-P(sol) polarization free energy of solvation -65.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds