Wall clock time and date at job start Tue Mar 31 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 N 1.46495 * 109.47644 * 179.97438 * 3 2 1 5 5 C 1.37099 * 119.99900 * 270.00267 * 4 3 2 6 6 H 1.07994 * 120.00661 * 143.07416 * 5 4 3 7 7 C 1.38950 * 119.99536 * 323.06975 * 5 4 3 8 8 N 1.31414 * 120.00373 * 338.27329 * 7 5 4 9 9 Si 1.86798 * 120.00090 * 158.27838 * 7 5 4 10 10 H 1.48509 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47397 * 119.99598 * 9 7 5 12 12 H 1.48503 * 109.47227 * 239.99925 * 9 7 5 13 13 C 1.34775 * 120.00474 * 89.99303 * 4 3 2 14 14 O 1.21290 * 119.99855 * 354.76698 * 13 4 3 15 15 C 1.50703 * 120.00219 * 174.76203 * 13 4 3 16 16 O 1.42904 * 109.46830 * 182.13339 * 15 13 4 17 17 C 1.35904 * 116.99498 * 183.20607 * 16 15 13 18 18 C 1.38735 * 120.05685 * 4.75786 * 17 16 15 19 19 C 1.38148 * 119.93921 * 179.77107 * 18 17 16 20 20 C 1.50699 * 119.96676 * 180.25749 * 19 18 17 21 21 C 1.38258 * 120.05615 * 0.50934 * 19 18 17 22 22 C 1.38267 * 120.11605 * 359.74497 * 21 19 18 23 23 C 1.50697 * 119.97706 * 180.02562 * 22 21 19 24 24 C 1.38145 * 120.05164 * 0.02562 * 22 21 19 25 25 H 1.09006 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47518 * 300.00300 * 1 2 3 27 27 H 1.09005 * 109.46911 * 60.00605 * 1 2 3 28 28 H 1.08999 * 109.47518 * 239.99700 * 2 1 3 29 29 H 1.09005 * 109.46911 * 119.99395 * 2 1 3 30 30 H 1.08999 * 109.47090 * 59.99437 * 3 2 1 31 31 H 1.09005 * 109.46654 * 299.99552 * 3 2 1 32 32 H 0.97000 * 120.00307 * 185.04708 * 8 7 5 33 33 H 1.08997 * 109.46883 * 62.13793 * 15 13 4 34 34 H 1.08999 * 109.47106 * 302.13601 * 15 13 4 35 35 H 1.07992 * 120.02812 * 0.02562 * 18 17 16 36 36 H 1.08997 * 109.47021 * 270.25128 * 20 19 18 37 37 H 1.09002 * 109.47232 * 30.25254 * 20 19 18 38 38 H 1.09002 * 109.47036 * 150.25062 * 20 19 18 39 39 H 1.08003 * 119.94632 * 179.72608 * 21 19 18 40 40 H 1.09000 * 109.46979 * 269.98214 * 23 22 21 41 41 H 1.09002 * 109.47133 * 29.97901 * 23 22 21 42 42 H 1.08991 * 109.47548 * 149.97803 * 23 22 21 43 43 H 1.08003 * 120.02458 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.4427 1.1882 6 1 5.1074 0.8810 1.2826 7 6 3.7036 2.1659 2.2705 8 7 2.8694 3.1621 2.0738 9 14 4.2357 1.7221 4.0052 10 1 5.1723 0.5706 3.9564 11 1 4.9145 2.8868 4.6281 12 1 3.0430 1.3556 4.8104 13 6 4.1794 1.4423 -1.1662 14 8 3.5772 1.3462 -2.2147 15 6 5.6817 1.5615 -1.1683 16 8 6.1556 1.5873 -2.5162 17 6 7.5021 1.6247 -2.6961 18 6 8.3519 1.5368 -1.6030 19 6 9.7204 1.5703 -1.7891 20 6 10.6441 1.4690 -0.6027 21 6 10.2431 1.7019 -3.0623 22 6 9.3982 1.7950 -4.1529 23 6 9.9713 1.9378 -5.5393 24 6 8.0291 1.7573 -3.9726 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 2.5871 3.7130 2.8205 33 1 6.1146 0.7076 -0.6473 34 1 5.9738 2.4819 -0.6627 35 1 7.9440 1.4381 -0.6080 36 1 10.8513 2.4672 -0.2173 37 1 10.1715 0.8698 0.1757 38 1 11.5776 0.9964 -0.9084 39 1 11.3132 1.7323 -3.2053 40 1 10.0941 2.9950 -5.7745 41 1 10.9403 1.4406 -5.5849 42 1 9.2944 1.4811 -6.2611 43 1 7.3696 1.8305 -4.8247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:51 Heat of formation + Delta-G solvation = -64.015807 kcal Electronic energy + Delta-G solvation = -23118.872970 eV Core-core repulsion = 19742.941076 eV Total energy + Delta-G solvation = -3375.931894 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.00453 -38.64593 -37.22045 -35.06405 -33.46916 -32.88586 -31.43539 -30.82311 -28.14040 -27.15253 -26.54221 -25.61646 -24.25463 -21.57180 -20.97446 -20.44248 -19.20369 -17.30330 -17.22898 -15.93985 -15.80301 -15.51755 -15.41004 -14.67221 -14.37996 -13.98618 -13.83224 -13.65306 -13.38972 -13.21800 -13.17613 -12.87434 -12.53665 -12.46546 -12.24751 -11.77765 -11.61192 -11.55002 -11.38757 -11.30803 -11.23264 -11.02880 -10.73635 -10.65876 -10.45277 -10.37696 -10.21586 -9.77771 -9.22177 -8.49379 -8.48348 -7.87613 -7.59223 -6.49853 -4.20205 1.46483 1.64903 3.01322 3.14025 3.16845 3.41683 3.77946 3.88884 4.02114 4.78734 4.81871 4.83909 4.94869 5.23458 5.31056 5.37145 5.47862 5.55835 5.62583 5.64807 5.72267 5.76876 5.78787 5.82605 5.87471 5.92024 5.98629 6.03995 6.19101 6.27786 6.46872 6.53120 6.56247 6.65075 6.65284 6.74503 6.79958 6.99575 7.06726 7.25616 7.41161 7.79778 7.82848 8.25506 8.95340 9.38168 9.81898 10.51372 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.004270 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.039589 B = 6555.404222 C = 7939.877554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.117 3.883 4 N -0.433 5.433 5 C -0.353 4.353 6 H 0.089 0.911 7 C 0.050 3.950 8 N -0.853 5.853 9 Si 0.914 3.086 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.277 1.277 13 C 0.471 3.529 14 O -0.586 6.586 15 C 0.062 3.938 16 O -0.293 6.293 17 C 0.149 3.851 18 C -0.218 4.218 19 C -0.045 4.045 20 C -0.115 4.115 21 C -0.170 4.170 22 C -0.049 4.049 23 C -0.111 4.111 24 C -0.163 4.163 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.272 0.728 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.820 -2.466 -3.966 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.152 5.152 5 C -0.481 4.481 6 H 0.107 0.893 7 C -0.157 4.157 8 N -0.489 5.489 9 Si 0.740 3.260 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.259 3.741 14 O -0.471 6.471 15 C -0.016 4.016 16 O -0.205 6.205 17 C 0.102 3.898 18 C -0.236 4.236 19 C -0.045 4.045 20 C -0.171 4.171 21 C -0.188 4.188 22 C -0.049 4.049 23 C -0.168 4.168 24 C -0.182 4.182 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.149 0.851 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.136 0.864 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 10.173 -2.403 -4.485 11.375 hybrid contribution 0.312 -0.110 1.367 1.406 sum 10.485 -2.514 -3.118 11.224 Atomic orbital electron populations 1.21659 0.96539 1.00502 1.01403 1.21824 0.94717 0.99321 1.01416 1.21467 0.80775 0.94852 1.03521 1.43338 1.04853 1.63128 1.03897 1.19450 1.09914 1.30815 0.87875 0.89340 1.25394 0.96226 0.93733 1.00388 1.69868 1.32183 1.14206 1.32625 0.86084 0.78838 0.78909 0.82172 1.19053 1.20545 1.20286 1.19838 0.87800 0.81935 0.84558 1.90566 1.69834 1.55005 1.31690 1.22425 0.95349 1.03002 0.80815 1.86153 1.17742 1.87379 1.29196 1.19118 0.83019 0.93684 0.93960 1.21241 0.93573 1.09998 0.98833 1.19647 0.93362 0.96578 0.94904 1.20804 0.98204 1.02356 0.95760 1.20691 0.99081 1.07380 0.91672 1.19602 0.92375 0.97313 0.95615 1.20768 1.00871 1.02233 0.92939 1.20265 0.94494 1.08192 0.95251 0.93578 0.92986 0.93103 0.92855 0.92235 0.87622 0.92745 0.91716 0.90481 0.89350 0.85100 0.91045 0.91386 0.91645 0.86430 0.91119 0.91598 0.91432 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.15 0.37 -2.06 16 2 C -0.13 -2.76 6.26 -26.73 -0.17 -2.93 16 3 C 0.12 2.79 4.97 -4.05 -0.02 2.77 16 4 N -0.43 -10.83 2.52 -114.82 -0.29 -11.12 16 5 C -0.35 -8.62 8.58 -14.93 -0.13 -8.75 16 6 H 0.09 2.04 7.15 -52.49 -0.38 1.67 16 7 C 0.05 1.21 4.95 -17.47 -0.09 1.12 16 8 N -0.85 -21.73 11.44 55.50 0.63 -21.09 16 9 Si 0.91 18.58 29.61 -169.99 -5.03 13.54 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.47 11.86 7.70 -10.98 -0.08 11.78 16 14 O -0.59 -16.31 16.14 -14.35 -0.23 -16.55 16 15 C 0.06 1.32 4.00 36.01 0.14 1.46 16 16 O -0.29 -6.25 9.67 -39.34 -0.38 -6.63 16 17 C 0.15 2.68 6.68 -39.22 -0.26 2.42 16 18 C -0.22 -3.49 8.72 -39.43 -0.34 -3.84 16 19 C -0.04 -0.61 5.88 -104.65 -0.62 -1.23 16 20 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 21 C -0.17 -2.17 9.35 -39.56 -0.37 -2.54 16 22 C -0.05 -0.65 5.88 -104.65 -0.62 -1.26 16 23 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 24 C -0.16 -2.59 9.64 -39.43 -0.38 -2.97 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 30 H 0.11 2.63 5.48 -51.93 -0.28 2.35 16 31 H 0.05 1.35 7.50 -51.93 -0.39 0.96 16 32 H 0.27 6.50 8.32 -40.82 -0.34 6.16 16 33 H 0.08 1.49 6.76 -51.93 -0.35 1.14 16 34 H 0.09 1.83 7.99 -51.93 -0.42 1.41 16 35 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 38 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 42 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 43 H 0.13 1.94 8.06 -52.48 -0.42 1.52 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -29.44 358.16 -8.51 -37.95 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -6.76 Total: 6.10 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.84 Total: -7.60 kcal Atomic # 7 Polarization: -32.56 SS G_CDS: 0.34 Total: -32.21 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.61 Total: -23.18 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.44 -8.51 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.070 kcal (2) G-P(sol) polarization free energy of solvation -29.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds