Wall clock time and date at job start Tue Mar 31 2020 06:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47281 * 2 1 4 4 N 1.46495 * 109.47644 * 179.97438 * 3 2 1 5 5 C 1.37099 * 119.99900 * 270.00267 * 4 3 2 6 6 H 1.07994 * 120.00661 * 143.07416 * 5 4 3 7 7 C 1.38950 * 119.99536 * 323.06975 * 5 4 3 8 8 N 1.31414 * 120.00373 * 338.27329 * 7 5 4 9 9 Si 1.86798 * 120.00090 * 158.27838 * 7 5 4 10 10 H 1.48509 * 109.47097 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47397 * 119.99598 * 9 7 5 12 12 H 1.48503 * 109.47227 * 239.99925 * 9 7 5 13 13 C 1.34775 * 120.00474 * 89.99303 * 4 3 2 14 14 O 1.21290 * 119.99855 * 354.76698 * 13 4 3 15 15 C 1.50703 * 120.00219 * 174.76203 * 13 4 3 16 16 O 1.42904 * 109.46830 * 182.13339 * 15 13 4 17 17 C 1.35904 * 116.99498 * 183.20607 * 16 15 13 18 18 C 1.38735 * 120.05685 * 4.75786 * 17 16 15 19 19 C 1.38148 * 119.93921 * 179.77107 * 18 17 16 20 20 C 1.50699 * 119.96676 * 180.25749 * 19 18 17 21 21 C 1.38258 * 120.05615 * 0.50934 * 19 18 17 22 22 C 1.38267 * 120.11605 * 359.74497 * 21 19 18 23 23 C 1.50697 * 119.97706 * 180.02562 * 22 21 19 24 24 C 1.38145 * 120.05164 * 0.02562 * 22 21 19 25 25 H 1.09006 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47518 * 300.00300 * 1 2 3 27 27 H 1.09005 * 109.46911 * 60.00605 * 1 2 3 28 28 H 1.08999 * 109.47518 * 239.99700 * 2 1 3 29 29 H 1.09005 * 109.46911 * 119.99395 * 2 1 3 30 30 H 1.08999 * 109.47090 * 59.99437 * 3 2 1 31 31 H 1.09005 * 109.46654 * 299.99552 * 3 2 1 32 32 H 0.97000 * 120.00307 * 185.04708 * 8 7 5 33 33 H 1.08997 * 109.46883 * 62.13793 * 15 13 4 34 34 H 1.08999 * 109.47106 * 302.13601 * 15 13 4 35 35 H 1.07992 * 120.02812 * 0.02562 * 18 17 16 36 36 H 1.08997 * 109.47021 * 270.25128 * 20 19 18 37 37 H 1.09002 * 109.47232 * 30.25254 * 20 19 18 38 38 H 1.09002 * 109.47036 * 150.25062 * 20 19 18 39 39 H 1.08003 * 119.94632 * 179.72608 * 21 19 18 40 40 H 1.09000 * 109.46979 * 269.98214 * 23 22 21 41 41 H 1.09002 * 109.47133 * 29.97901 * 23 22 21 42 42 H 1.08991 * 109.47548 * 149.97803 * 23 22 21 43 43 H 1.08003 * 120.02458 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1899 1.4427 1.1882 6 1 5.1074 0.8810 1.2826 7 6 3.7036 2.1659 2.2705 8 7 2.8694 3.1621 2.0738 9 14 4.2357 1.7221 4.0052 10 1 5.1723 0.5706 3.9564 11 1 4.9145 2.8868 4.6281 12 1 3.0430 1.3556 4.8104 13 6 4.1794 1.4423 -1.1662 14 8 3.5772 1.3462 -2.2147 15 6 5.6817 1.5615 -1.1683 16 8 6.1556 1.5873 -2.5162 17 6 7.5021 1.6247 -2.6961 18 6 8.3519 1.5368 -1.6030 19 6 9.7204 1.5703 -1.7891 20 6 10.6441 1.4690 -0.6027 21 6 10.2431 1.7019 -3.0623 22 6 9.3982 1.7950 -4.1529 23 6 9.9713 1.9378 -5.5393 24 6 8.0291 1.7573 -3.9726 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.6766 1.9563 0.8899 31 1 1.6767 1.9562 -0.8901 32 1 2.5871 3.7130 2.8205 33 1 6.1146 0.7076 -0.6473 34 1 5.9738 2.4819 -0.6627 35 1 7.9440 1.4381 -0.6080 36 1 10.8513 2.4672 -0.2173 37 1 10.1715 0.8698 0.1757 38 1 11.5776 0.9964 -0.9084 39 1 11.3132 1.7323 -3.2053 40 1 10.0941 2.9950 -5.7745 41 1 10.9403 1.4406 -5.5849 42 1 9.2944 1.4811 -6.2611 43 1 7.3696 1.8305 -4.8247 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:50 Heat of formation + Delta-G solvation = -77.957274 kcal Electronic energy + Delta-G solvation = -23119.477517 eV Core-core repulsion = 19742.941076 eV Total energy + Delta-G solvation = -3376.536442 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39001 -40.39023 -38.64595 -37.00150 -34.61620 -34.44793 -33.33035 -32.02541 -29.70447 -28.06576 -27.75422 -27.35440 -25.99110 -22.90140 -22.43587 -21.75396 -21.03972 -19.00027 -18.75471 -17.61795 -17.30318 -16.97403 -16.79903 -16.46484 -16.05522 -15.46761 -15.42567 -14.84033 -14.69318 -14.63236 -14.10753 -14.04216 -13.96282 -13.68637 -13.33318 -13.27823 -13.25296 -13.04518 -12.76252 -12.65441 -12.61662 -12.44361 -12.33539 -12.06811 -12.01564 -11.81115 -11.60874 -11.55351 -11.09971 -10.46812 -9.58274 -9.55020 -9.12150 -8.37404 -6.15323 0.34455 0.47686 1.37546 1.48451 1.60483 1.79783 1.93889 2.31497 2.75049 2.96297 3.12664 3.78011 3.88269 4.00680 4.06843 4.17207 4.19827 4.30777 4.32000 4.35860 4.42268 4.49153 4.53011 4.69397 4.74549 4.83421 4.84639 4.87942 4.93318 4.98651 5.06137 5.13175 5.17958 5.32192 5.33199 5.38488 5.40215 5.52025 5.57089 5.66750 5.89821 5.91857 6.31949 6.45727 7.03338 7.43362 7.88337 8.65445 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.004270 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.039589 B = 6555.404222 C = 7939.877554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.125 4.125 3 C 0.116 3.884 4 N -0.438 5.438 5 C -0.371 4.371 6 H 0.100 0.900 7 C 0.013 3.987 8 N -0.886 5.886 9 Si 0.985 3.015 10 H -0.255 1.255 11 H -0.276 1.276 12 H -0.276 1.276 13 C 0.451 3.549 14 O -0.625 6.625 15 C 0.080 3.920 16 O -0.323 6.323 17 C 0.112 3.888 18 C -0.232 4.232 19 C -0.047 4.047 20 C -0.113 4.113 21 C -0.164 4.164 22 C -0.046 4.046 23 C -0.110 4.110 24 C -0.183 4.183 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.032 0.968 32 H 0.277 0.723 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.385 -3.160 -2.946 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.008 4.008 4 N -0.156 5.156 5 C -0.498 4.498 6 H 0.118 0.882 7 C -0.192 4.192 8 N -0.522 5.522 9 Si 0.808 3.192 10 H -0.179 1.179 11 H -0.202 1.202 12 H -0.202 1.202 13 C 0.240 3.760 14 O -0.513 6.513 15 C 0.002 3.998 16 O -0.237 6.237 17 C 0.066 3.934 18 C -0.251 4.251 19 C -0.047 4.047 20 C -0.170 4.170 21 C -0.182 4.182 22 C -0.046 4.046 23 C -0.166 4.166 24 C -0.202 4.202 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.171 0.829 40 H 0.102 0.898 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.753 -3.100 -3.461 13.573 hybrid contribution -0.406 0.163 0.987 1.080 sum 12.347 -2.937 -2.473 12.930 Atomic orbital electron populations 1.21616 0.93478 1.02470 1.01803 1.21719 0.97370 0.96638 1.00591 1.21485 0.80694 0.96763 1.01812 1.43626 1.05422 1.62254 1.04317 1.19832 1.10646 1.31498 0.87797 0.88197 1.26256 0.95933 0.93025 1.03973 1.69967 1.33139 1.15065 1.34011 0.85005 0.78518 0.78865 0.76811 1.17887 1.20177 1.20176 1.20543 0.89602 0.81745 0.84116 1.90514 1.71012 1.56924 1.32866 1.22116 0.92635 1.03464 0.81549 1.86088 1.20214 1.88581 1.28777 1.19488 0.81792 0.96452 0.95622 1.21341 0.94744 1.10902 0.98080 1.20076 0.92711 0.95173 0.96743 1.20875 0.98378 1.03266 0.94436 1.21161 1.00825 1.05270 0.90905 1.20048 0.91176 0.95471 0.97873 1.20856 1.01815 1.03422 0.90549 1.20488 0.96008 1.09261 0.94402 0.90796 0.92331 0.92985 0.94349 0.92187 0.88582 0.94905 0.91315 0.88946 0.89419 0.85411 0.89986 0.91405 0.89233 0.82861 0.89819 0.89216 0.91187 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.91 71.98 0.71 -3.78 16 2 C -0.12 -5.22 6.26 30.59 0.19 -5.02 16 3 C 0.12 5.72 4.97 86.38 0.43 6.15 16 4 N -0.44 -22.70 2.52 -635.55 -1.60 -24.31 16 5 C -0.37 -18.31 8.58 84.04 0.72 -17.59 16 6 H 0.10 4.61 7.15 -2.91 -0.02 4.58 16 7 C 0.01 0.62 4.95 84.93 0.42 1.04 16 8 N -0.89 -45.59 11.44 21.66 0.25 -45.34 16 9 Si 0.99 37.35 29.61 68.60 2.03 39.38 16 10 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 11 H -0.28 -10.30 7.11 99.48 0.71 -9.59 16 12 H -0.28 -10.41 7.11 99.48 0.71 -9.70 16 13 C 0.45 23.86 7.70 87.66 0.67 24.54 16 14 O -0.63 -36.87 16.14 15.97 0.26 -36.61 16 15 C 0.08 3.57 4.00 71.24 0.28 3.85 16 16 O -0.32 -14.62 9.67 -73.45 -0.71 -15.33 16 17 C 0.11 4.17 6.68 22.51 0.15 4.32 16 18 C -0.23 -7.47 8.72 22.37 0.20 -7.28 16 19 C -0.05 -1.19 5.88 -19.88 -0.12 -1.31 16 20 C -0.11 -2.05 10.01 71.24 0.71 -1.34 16 21 C -0.16 -3.69 9.35 22.28 0.21 -3.49 16 22 C -0.05 -1.13 5.88 -19.88 -0.12 -1.24 16 23 C -0.11 -1.82 10.01 71.23 0.71 -1.11 16 24 C -0.18 -5.91 9.64 22.37 0.22 -5.70 16 25 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16 28 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.10 4.94 5.48 -2.39 -0.01 4.92 16 31 H 0.03 1.72 7.50 -2.38 -0.02 1.70 16 32 H 0.28 13.27 8.32 -92.71 -0.77 12.50 16 33 H 0.09 3.71 6.76 -2.39 -0.02 3.70 16 34 H 0.09 3.82 7.99 -2.39 -0.02 3.80 16 35 H 0.13 4.05 6.29 -2.91 -0.02 4.03 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.07 1.24 8.09 -2.39 -0.02 1.22 16 38 H 0.09 1.20 8.09 -2.39 -0.02 1.19 16 39 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 42 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 43 H 0.12 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -66.25 358.16 6.60 -59.65 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 0.98 Total: 30.51 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 5.40 Total: -7.95 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: -1.36 Total: -69.65 kcal Atomic # 8 Polarization: -51.48 SS G_CDS: -0.45 Total: -51.94 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.38 kcal Total: -66.25 6.60 -59.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.305 kcal (2) G-P(sol) polarization free energy of solvation -66.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds