Wall clock time and date at job start Tue Mar 31 2020 06:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47147 * 2 1 4 4 N 1.46493 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99974 * 262.98832 * 4 3 2 6 6 H 1.08000 * 119.99699 * 142.21104 * 5 4 3 7 7 C 1.38947 * 119.99838 * 322.20798 * 5 4 3 8 8 N 1.31412 * 119.99935 * 157.12835 * 7 5 4 9 9 Si 1.86801 * 120.00135 * 337.13092 * 7 5 4 10 10 H 1.48494 * 109.47184 * 95.20617 * 9 7 5 11 11 H 1.48500 * 109.46687 * 215.20399 * 9 7 5 12 12 H 1.48503 * 109.47026 * 335.20211 * 9 7 5 13 13 C 1.34777 * 120.00315 * 82.98584 * 4 3 2 14 14 O 1.21293 * 120.00449 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00006 * 0.02562 * 13 4 3 16 16 O 1.42895 * 109.47346 * 179.97438 * 15 13 4 17 17 C 1.35906 * 116.99922 * 179.97438 * 16 15 13 18 18 C 1.38750 * 120.05631 * 359.97438 * 17 16 15 19 19 C 1.38118 * 119.94485 * 180.27699 * 18 17 16 20 20 C 1.38294 * 120.05363 * 359.49168 * 19 18 17 21 21 C 1.50702 * 119.94215 * 180.25420 * 20 19 18 22 22 C 1.38247 * 120.11079 * 0.51442 * 20 19 18 23 23 C 1.50693 * 119.97135 * 179.71966 * 22 20 19 24 24 C 1.38165 * 120.05588 * 359.74175 * 22 20 19 25 25 H 1.09003 * 109.46599 * 299.99918 * 1 2 3 26 26 H 1.09000 * 109.47541 * 59.99969 * 1 2 3 27 27 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47445 * 240.00438 * 2 1 3 29 29 H 1.09000 * 109.47541 * 120.00031 * 2 1 3 30 30 H 1.08994 * 109.46863 * 60.00088 * 3 2 1 31 31 H 1.09000 * 109.46926 * 300.00408 * 3 2 1 32 32 H 0.96996 * 119.99973 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47082 * 59.99180 * 15 13 4 34 34 H 1.09000 * 109.46802 * 300.00138 * 15 13 4 35 35 H 1.08006 * 120.02616 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.97677 * 179.73154 * 19 18 17 37 37 H 1.09003 * 109.46992 * 270.25316 * 21 20 19 38 38 H 1.08992 * 109.47388 * 30.26044 * 21 20 19 39 39 H 1.09001 * 109.46631 * 150.26116 * 21 20 19 40 40 H 1.09004 * 109.47401 * 270.02404 * 23 22 20 41 41 H 1.09002 * 109.47142 * 30.02343 * 23 22 20 42 42 H 1.09001 * 109.47273 * 150.02184 * 23 22 20 43 43 H 1.07995 * 120.02986 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5874 1.1776 6 1 5.1011 1.0305 1.3443 7 6 3.7152 2.4506 2.1569 8 7 4.0686 2.2801 3.4111 9 14 2.5730 3.8534 1.6908 10 1 1.1633 3.4298 1.8866 11 1 2.8598 5.0309 2.5489 12 1 2.7883 4.2145 0.2665 13 6 4.1784 1.3002 -1.1594 14 8 5.3913 1.3007 -1.1599 15 6 3.4244 1.1416 -2.4545 16 8 4.3526 1.0097 -3.5330 17 6 3.8326 0.8565 -4.7792 18 6 2.4572 0.8332 -4.9603 19 6 1.9312 0.6717 -6.2272 20 6 2.7742 0.5438 -7.3160 21 6 2.1976 0.3734 -8.6979 22 6 4.1450 0.5666 -7.1382 23 6 5.0608 0.4206 -8.3260 24 6 4.6761 0.7226 -5.8723 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7368 2.8829 4.0947 33 1 2.7979 2.0181 -2.6199 34 1 2.7975 0.2515 -2.4032 35 1 1.7984 0.9372 -4.1108 36 1 0.8607 0.6491 -6.3682 37 1 2.0594 -0.6877 -8.9056 38 1 1.2361 0.8833 -8.7557 39 1 2.8806 0.8013 -9.4317 40 1 5.2819 -0.6345 -8.4869 41 1 4.5746 0.8291 -9.2120 42 1 5.9882 0.9617 -8.1385 43 1 5.7470 0.7400 -5.7338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:54 Heat of formation + Delta-G solvation = -47.454044 kcal Electronic energy + Delta-G solvation = -23274.872387 eV Core-core repulsion = 19899.658664 eV Total energy + Delta-G solvation = -3375.213722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25498 -38.97548 -37.56109 -35.51841 -32.99231 -32.68932 -32.02223 -31.63819 -28.90287 -27.21433 -26.05984 -25.89450 -24.35334 -22.22998 -21.51992 -20.72921 -19.02527 -17.87813 -17.04278 -16.34305 -15.97630 -15.82953 -15.32286 -15.23990 -14.53843 -14.35446 -14.21382 -13.77916 -13.71748 -13.30379 -13.22130 -12.94294 -12.90121 -12.51481 -12.45532 -12.15294 -12.07425 -11.92076 -11.82844 -11.47379 -11.29724 -11.18088 -10.90263 -10.75883 -10.68859 -10.53687 -10.09875 -9.90269 -9.13113 -8.80257 -8.58307 -7.95553 -7.83715 -6.45885 -4.03012 1.30820 1.44508 2.97376 3.17035 3.17644 3.22598 3.57844 3.71762 4.09469 4.42099 4.71559 4.73824 4.86994 4.95157 5.05274 5.08526 5.19271 5.25721 5.30225 5.33957 5.36419 5.44043 5.50120 5.52564 5.63669 5.68419 5.69510 5.70242 5.77349 5.91694 5.99387 6.07190 6.10647 6.22483 6.32843 6.41770 6.45830 6.60919 6.67121 6.80994 7.42860 7.59984 8.20164 8.43743 8.88657 9.23254 9.66140 10.65827 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003832 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.769330 B = 7305.105422 C = 7889.737724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.087 3.913 4 N -0.461 5.461 5 C -0.316 4.316 6 H 0.107 0.893 7 C 0.064 3.936 8 N -0.858 5.858 9 Si 0.870 3.130 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.466 3.534 14 O -0.541 6.541 15 C 0.044 3.956 16 O -0.286 6.286 17 C 0.137 3.863 18 C -0.215 4.215 19 C -0.076 4.076 20 C -0.136 4.136 21 C -0.109 4.109 22 C -0.049 4.049 23 C -0.116 4.116 24 C -0.151 4.151 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.057 0.943 32 H 0.275 0.725 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 -3.361 -19.306 21.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.036 4.036 4 N -0.184 5.184 5 C -0.442 4.442 6 H 0.125 0.875 7 C -0.142 4.142 8 N -0.494 5.494 9 Si 0.697 3.303 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.188 1.188 13 C 0.253 3.747 14 O -0.421 6.421 15 C -0.035 4.035 16 O -0.197 6.197 17 C 0.090 3.910 18 C -0.234 4.234 19 C -0.094 4.094 20 C -0.137 4.137 21 C -0.165 4.165 22 C -0.049 4.049 23 C -0.173 4.173 24 C -0.170 4.170 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.262 -3.282 -19.013 20.989 hybrid contribution -1.062 0.850 0.176 1.371 sum -9.324 -2.432 -18.838 21.159 Atomic orbital electron populations 1.21732 0.95879 1.01470 1.01645 1.21947 0.95218 0.97627 1.03023 1.21964 0.82966 0.96862 1.01841 1.43641 1.03732 1.65264 1.05730 1.19023 1.10816 1.25351 0.89032 0.87543 1.25338 0.97206 0.97005 0.94699 1.69755 1.43729 1.36237 0.99707 0.87057 0.80224 0.83170 0.79855 1.20009 1.21071 1.18794 1.19740 0.88250 0.83216 0.83533 1.90605 1.13441 1.52234 1.85797 1.22773 0.92155 1.02027 0.86544 1.86207 1.34682 1.86495 1.12349 1.19152 0.91896 0.94700 0.85230 1.21275 0.94021 1.09329 0.98755 1.20754 0.99262 0.97881 0.91484 1.19598 0.92825 1.05484 0.95750 1.20747 1.00665 1.01789 0.93308 1.19492 0.93521 0.97881 0.94054 1.20862 0.98496 1.02396 0.95523 1.20293 0.99925 1.06859 0.89886 0.92565 0.93065 0.92694 0.92372 0.90355 0.90145 0.92441 0.91463 0.90341 0.90130 0.85451 0.86007 0.91668 0.92010 0.91468 0.90975 0.91068 0.91386 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.14 -2.26 6.13 -26.73 -0.16 -2.43 16 3 C 0.09 1.69 3.74 -4.04 -0.02 1.67 16 4 N -0.46 -11.07 2.18 -114.81 -0.25 -11.32 16 5 C -0.32 -8.88 9.35 -14.93 -0.14 -9.02 16 6 H 0.11 3.38 7.92 -52.49 -0.42 2.96 16 7 C 0.06 1.75 5.24 -17.47 -0.09 1.66 16 8 N -0.86 -24.49 13.96 55.50 0.77 -23.71 16 9 Si 0.87 20.17 25.12 -169.99 -4.27 15.90 16 10 H -0.27 -5.80 6.67 56.52 0.38 -5.43 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.47 11.18 7.65 -10.98 -0.08 11.10 16 14 O -0.54 -15.43 16.37 -14.36 -0.24 -15.66 16 15 C 0.04 0.80 3.83 36.01 0.14 0.94 16 16 O -0.29 -5.56 9.67 -39.35 -0.38 -5.94 16 17 C 0.14 2.19 6.69 -39.22 -0.26 1.93 16 18 C -0.22 -2.92 9.04 -39.44 -0.36 -3.27 16 19 C -0.08 -0.88 9.69 -39.60 -0.38 -1.26 16 20 C -0.14 -1.52 5.88 -104.60 -0.62 -2.14 16 21 C -0.11 -0.86 9.60 36.01 0.35 -0.51 16 22 C -0.05 -0.59 5.88 -104.65 -0.62 -1.20 16 23 C -0.12 -1.01 9.60 36.00 0.35 -0.66 16 24 C -0.15 -2.17 9.64 -39.43 -0.38 -2.55 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.88 6.39 -51.93 -0.33 0.55 16 29 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.66 3.72 -51.93 -0.19 1.46 16 31 H 0.06 0.94 6.74 -51.93 -0.35 0.59 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.08 1.27 6.95 -51.93 -0.36 0.91 16 34 H 0.08 1.27 5.87 -51.93 -0.30 0.96 16 35 H 0.13 1.55 6.30 -52.48 -0.33 1.22 16 36 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.07 0.46 5.94 -51.93 -0.31 0.15 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.51 5.94 -51.93 -0.31 0.20 16 42 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 43 H 0.13 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -32.88 345.25 -7.35 -40.23 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.28 Total: 2.58 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.91 Total: -7.29 kcal Atomic # 7 Polarization: -35.56 SS G_CDS: 0.52 Total: -35.03 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.62 Total: -21.60 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.27 Total: 15.90 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.88 -7.35 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.220 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds