Wall clock time and date at job start Tue Mar 31 2020 06:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47147 * 2 1 4 4 N 1.46493 * 109.47210 * 180.02562 * 3 2 1 5 5 C 1.37099 * 119.99974 * 262.98832 * 4 3 2 6 6 H 1.08000 * 119.99699 * 142.21104 * 5 4 3 7 7 C 1.38947 * 119.99838 * 322.20798 * 5 4 3 8 8 N 1.31412 * 119.99935 * 157.12835 * 7 5 4 9 9 Si 1.86801 * 120.00135 * 337.13092 * 7 5 4 10 10 H 1.48494 * 109.47184 * 95.20617 * 9 7 5 11 11 H 1.48500 * 109.46687 * 215.20399 * 9 7 5 12 12 H 1.48503 * 109.47026 * 335.20211 * 9 7 5 13 13 C 1.34777 * 120.00315 * 82.98584 * 4 3 2 14 14 O 1.21293 * 120.00449 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00006 * 0.02562 * 13 4 3 16 16 O 1.42895 * 109.47346 * 179.97438 * 15 13 4 17 17 C 1.35906 * 116.99922 * 179.97438 * 16 15 13 18 18 C 1.38750 * 120.05631 * 359.97438 * 17 16 15 19 19 C 1.38118 * 119.94485 * 180.27699 * 18 17 16 20 20 C 1.38294 * 120.05363 * 359.49168 * 19 18 17 21 21 C 1.50702 * 119.94215 * 180.25420 * 20 19 18 22 22 C 1.38247 * 120.11079 * 0.51442 * 20 19 18 23 23 C 1.50693 * 119.97135 * 179.71966 * 22 20 19 24 24 C 1.38165 * 120.05588 * 359.74175 * 22 20 19 25 25 H 1.09003 * 109.46599 * 299.99918 * 1 2 3 26 26 H 1.09000 * 109.47541 * 59.99969 * 1 2 3 27 27 H 1.09004 * 109.47091 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47445 * 240.00438 * 2 1 3 29 29 H 1.09000 * 109.47541 * 120.00031 * 2 1 3 30 30 H 1.08994 * 109.46863 * 60.00088 * 3 2 1 31 31 H 1.09000 * 109.46926 * 300.00408 * 3 2 1 32 32 H 0.96996 * 119.99973 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47082 * 59.99180 * 15 13 4 34 34 H 1.09000 * 109.46802 * 300.00138 * 15 13 4 35 35 H 1.08006 * 120.02616 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.97677 * 179.73154 * 19 18 17 37 37 H 1.09003 * 109.46992 * 270.25316 * 21 20 19 38 38 H 1.08992 * 109.47388 * 30.26044 * 21 20 19 39 39 H 1.09001 * 109.46631 * 150.26116 * 21 20 19 40 40 H 1.09004 * 109.47401 * 270.02404 * 23 22 20 41 41 H 1.09002 * 109.47142 * 30.02343 * 23 22 20 42 42 H 1.09001 * 109.47273 * 150.02184 * 23 22 20 43 43 H 1.07995 * 120.02986 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1909 1.5874 1.1776 6 1 5.1011 1.0305 1.3443 7 6 3.7152 2.4506 2.1569 8 7 4.0686 2.2801 3.4111 9 14 2.5730 3.8534 1.6908 10 1 1.1633 3.4298 1.8866 11 1 2.8598 5.0309 2.5489 12 1 2.7883 4.2145 0.2665 13 6 4.1784 1.3002 -1.1594 14 8 5.3913 1.3007 -1.1599 15 6 3.4244 1.1416 -2.4545 16 8 4.3526 1.0097 -3.5330 17 6 3.8326 0.8565 -4.7792 18 6 2.4572 0.8332 -4.9603 19 6 1.9312 0.6717 -6.2272 20 6 2.7742 0.5438 -7.3160 21 6 2.1976 0.3734 -8.6979 22 6 4.1450 0.5666 -7.1382 23 6 5.0608 0.4206 -8.3260 24 6 4.6761 0.7226 -5.8723 25 1 -0.3632 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7368 2.8829 4.0947 33 1 2.7979 2.0181 -2.6199 34 1 2.7975 0.2515 -2.4032 35 1 1.7984 0.9372 -4.1108 36 1 0.8607 0.6491 -6.3682 37 1 2.0594 -0.6877 -8.9056 38 1 1.2361 0.8833 -8.7557 39 1 2.8806 0.8013 -9.4317 40 1 5.2819 -0.6345 -8.4869 41 1 4.5746 0.8291 -9.2120 42 1 5.9882 0.9617 -8.1385 43 1 5.7470 0.7400 -5.7338 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:53 Heat of formation + Delta-G solvation = -67.307769 kcal Electronic energy + Delta-G solvation = -23275.733309 eV Core-core repulsion = 19899.658664 eV Total energy + Delta-G solvation = -3376.074645 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.49058 -40.53922 -38.80158 -37.32172 -34.78245 -33.58474 -33.38147 -32.92923 -30.31259 -28.25484 -27.42162 -26.83502 -26.15367 -23.17663 -22.82669 -21.90436 -20.68328 -19.22288 -18.88280 -17.73119 -17.64405 -17.29770 -16.77354 -16.23487 -15.92123 -15.56931 -15.48770 -15.02048 -14.95701 -14.72534 -14.40551 -14.30655 -14.14893 -13.72423 -13.53775 -13.38663 -13.28482 -13.04053 -12.93374 -12.73850 -12.50991 -12.44636 -12.16465 -12.07357 -11.91338 -11.78207 -11.71911 -11.41641 -11.08236 -10.50404 -9.81696 -9.73814 -8.97363 -8.57599 -6.21069 0.37023 0.46228 1.14883 1.28019 1.41108 1.75017 1.80908 2.13235 2.75365 2.76534 2.94846 3.59826 3.75486 3.91814 3.92874 3.97639 4.04951 4.13136 4.17431 4.29715 4.36524 4.40220 4.44193 4.58320 4.63241 4.76006 4.82296 4.85698 4.96387 4.98459 5.04695 5.16401 5.22324 5.24631 5.28471 5.40535 5.42723 5.45658 5.51098 5.74416 5.91146 5.97132 6.36379 6.53147 6.84533 7.17010 7.72052 8.59451 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.003832 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.769330 B = 7305.105422 C = 7889.737724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.078 3.922 4 N -0.466 5.466 5 C -0.339 4.339 6 H 0.043 0.957 7 C 0.019 3.981 8 N -0.903 5.903 9 Si 0.942 3.058 10 H -0.230 1.230 11 H -0.285 1.285 12 H -0.260 1.260 13 C 0.453 3.547 14 O -0.605 6.605 15 C 0.060 3.940 16 O -0.324 6.324 17 C 0.100 3.900 18 C -0.218 4.218 19 C -0.077 4.077 20 C -0.133 4.133 21 C -0.108 4.108 22 C -0.054 4.054 23 C -0.116 4.116 24 C -0.174 4.174 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.283 0.717 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.144 0.856 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.066 0.934 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 -2.709 -22.703 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.044 4.044 4 N -0.188 5.188 5 C -0.467 4.467 6 H 0.061 0.939 7 C -0.184 4.184 8 N -0.540 5.540 9 Si 0.764 3.236 10 H -0.155 1.155 11 H -0.212 1.212 12 H -0.184 1.184 13 C 0.242 3.758 14 O -0.489 6.489 15 C -0.018 4.018 16 O -0.238 6.238 17 C 0.055 3.945 18 C -0.236 4.236 19 C -0.094 4.094 20 C -0.134 4.134 21 C -0.164 4.164 22 C -0.055 4.055 23 C -0.172 4.172 24 C -0.193 4.193 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.162 0.838 36 H 0.172 0.828 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.810 -2.655 -22.419 25.957 hybrid contribution 0.429 0.549 1.157 1.351 sum -12.381 -2.105 -21.262 24.695 Atomic orbital electron populations 1.21708 0.92369 1.03076 1.02880 1.21895 0.98104 0.95258 1.02111 1.22298 0.79541 0.99335 1.03213 1.43756 1.05851 1.64716 1.04463 1.18608 1.10125 1.26334 0.91601 0.93930 1.26131 0.99354 0.99021 0.93940 1.69864 1.45718 1.37408 1.01027 0.85941 0.79945 0.78382 0.79374 1.15455 1.21160 1.18369 1.20786 0.87973 0.81535 0.85488 1.90559 1.16495 1.54804 1.87078 1.22571 0.91092 1.04661 0.83428 1.86138 1.36047 1.87761 1.13824 1.19446 0.93544 0.97559 0.83937 1.21494 0.92823 1.08957 1.00373 1.21174 1.00995 0.96597 0.90663 1.20095 0.92430 1.03306 0.97542 1.20832 1.01467 1.02887 0.91236 1.19863 0.94798 0.96972 0.93827 1.20939 0.98071 1.03248 0.94944 1.20478 0.99575 1.08174 0.91032 0.92863 0.90263 0.91021 0.91217 0.93558 0.91202 0.88268 0.90766 0.87303 0.87104 0.83807 0.82815 0.90469 0.90528 0.90294 0.89921 0.88927 0.91538 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.14 -4.12 6.13 30.60 0.19 -3.93 16 3 C 0.08 2.84 3.74 86.38 0.32 3.17 16 4 N -0.47 -22.88 2.18 -635.54 -1.39 -24.27 16 5 C -0.34 -20.31 9.35 84.04 0.79 -19.52 16 6 H 0.04 3.01 7.92 -2.91 -0.02 2.99 16 7 C 0.02 1.06 5.24 84.93 0.45 1.50 16 8 N -0.90 -53.73 13.96 21.66 0.30 -53.43 16 9 Si 0.94 41.16 25.12 68.60 1.72 42.88 16 10 H -0.23 -8.51 6.67 99.48 0.66 -7.85 16 11 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 C 0.45 22.46 7.65 87.66 0.67 23.13 16 14 O -0.61 -37.00 16.37 15.97 0.26 -36.74 16 15 C 0.06 2.16 3.83 71.24 0.27 2.43 16 16 O -0.32 -12.87 9.67 -73.46 -0.71 -13.58 16 17 C 0.10 3.17 6.69 22.51 0.15 3.32 16 18 C -0.22 -5.31 9.04 22.36 0.20 -5.10 16 19 C -0.08 -1.48 9.69 22.25 0.22 -1.26 16 20 C -0.13 -2.52 5.88 -19.85 -0.12 -2.64 16 21 C -0.11 -1.22 9.60 71.24 0.68 -0.53 16 22 C -0.05 -1.20 5.88 -19.88 -0.12 -1.32 16 23 C -0.12 -1.75 9.60 71.23 0.68 -1.07 16 24 C -0.17 -5.05 9.64 22.37 0.22 -4.84 16 25 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.07 1.94 6.39 -2.39 -0.02 1.93 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.69 3.72 -2.39 -0.01 2.68 16 31 H 0.10 2.79 6.74 -2.39 -0.02 2.77 16 32 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.11 3.17 6.95 -2.39 -0.02 3.16 16 34 H 0.11 3.22 5.87 -2.39 -0.01 3.20 16 35 H 0.14 2.88 6.30 -2.91 -0.02 2.87 16 36 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.68 8.09 -2.39 -0.02 0.66 16 39 H 0.08 0.72 5.94 -2.39 -0.01 0.71 16 40 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.09 1.00 5.94 -2.39 -0.01 0.98 16 42 H 0.07 1.02 8.08 -2.39 -0.02 1.00 16 43 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -80.53 345.25 6.47 -74.06 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.96 Total: 20.07 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 5.32 Total: -8.99 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -1.09 Total: -77.70 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.45 Total: -50.32 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.72 Total: 42.88 kcal Total: -80.53 6.47 -74.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.750 kcal (2) G-P(sol) polarization free energy of solvation -80.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds