Wall clock time and date at job start Tue Mar 31 2020 06:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 N 1.46502 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99667 * 262.98831 * 4 3 2 6 6 H 1.08001 * 119.99938 * 142.21389 * 5 4 3 7 7 C 1.38949 * 120.00464 * 322.20702 * 5 4 3 8 8 N 1.31411 * 120.00117 * 157.13068 * 7 5 4 9 9 Si 1.86801 * 120.00026 * 337.13592 * 7 5 4 10 10 H 1.48499 * 109.47140 * 95.19933 * 9 7 5 11 11 H 1.48494 * 109.46940 * 215.20230 * 9 7 5 12 12 H 1.48501 * 109.46901 * 335.20220 * 9 7 5 13 13 C 1.34771 * 120.00071 * 82.99574 * 4 3 2 14 14 O 1.21296 * 120.00214 * 180.27390 * 13 4 3 15 15 C 1.50700 * 120.00272 * 359.97438 * 13 4 3 16 16 O 1.42898 * 109.47531 * 180.02562 * 15 13 4 17 17 C 1.35896 * 117.00322 * 179.97438 * 16 15 13 18 18 C 1.38759 * 120.05556 * 0.02562 * 17 16 15 19 19 C 1.38120 * 119.94835 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.97560 * 179.97438 * 19 18 17 21 21 C 1.38293 * 120.05026 * 0.02562 * 19 18 17 22 22 C 1.38238 * 120.11462 * 359.95283 * 21 19 18 23 23 C 1.38164 * 120.05652 * 359.77357 * 22 21 19 24 24 C 1.50696 * 120.03104 * 180.25287 * 23 22 21 25 25 H 1.09003 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47306 * 299.99675 * 1 2 3 27 27 H 1.08999 * 109.47760 * 60.00042 * 1 2 3 28 28 H 1.09004 * 109.46736 * 239.99824 * 2 1 3 29 29 H 1.09003 * 109.47630 * 120.00459 * 2 1 3 30 30 H 1.08999 * 109.46956 * 60.00319 * 3 2 1 31 31 H 1.08998 * 109.46867 * 300.00067 * 3 2 1 32 32 H 0.96998 * 119.99790 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47182 * 300.01033 * 15 13 4 34 34 H 1.09001 * 109.46744 * 60.00200 * 15 13 4 35 35 H 1.08007 * 120.02587 * 359.97438 * 18 17 16 36 36 H 1.08997 * 109.47280 * 90.00006 * 20 19 18 37 37 H 1.09001 * 109.47296 * 210.00308 * 20 19 18 38 38 H 1.09001 * 109.47102 * 329.99777 * 20 19 18 39 39 H 1.08000 * 119.93974 * 179.97438 * 21 19 18 40 40 H 1.08000 * 119.97243 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.47086 * 270.27415 * 24 23 22 42 42 H 1.08997 * 109.47265 * 30.27434 * 24 23 22 43 43 H 1.09002 * 109.47516 * 150.26930 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1909 1.5871 1.1776 6 1 5.1011 1.0302 1.3444 7 6 3.7152 2.4504 2.1570 8 7 4.0687 2.2799 3.4111 9 14 2.5731 3.8532 1.6910 10 1 1.1634 3.4296 1.8867 11 1 2.8599 5.0307 2.5490 12 1 2.7883 4.2143 0.2667 13 6 4.1783 1.3002 -1.1594 14 8 5.3913 1.2952 -1.1593 15 6 3.4244 1.1407 -2.4544 16 8 4.3525 1.0079 -3.5328 17 6 3.8326 0.8539 -4.7789 18 6 2.4571 0.8316 -4.9601 19 6 1.9311 0.6754 -6.2277 20 6 0.4373 0.6505 -6.4252 21 6 2.7742 0.5409 -7.3156 22 6 4.1449 0.5632 -7.1378 23 6 4.6760 0.7248 -5.8726 24 6 6.1703 0.7548 -5.6801 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7363 2.8823 4.0949 33 1 2.7979 0.2502 -2.4028 34 1 2.7974 2.0168 -2.6200 35 1 1.7982 0.9362 -4.1107 36 1 0.0767 1.6645 -6.5982 37 1 0.1948 0.0269 -7.2856 38 1 -0.0402 0.2422 -5.5345 39 1 2.3609 0.4185 -8.3059 40 1 4.8012 0.4583 -7.9891 41 1 6.5351 -0.2581 -5.5100 42 1 6.6433 1.1663 -6.5717 43 1 6.4134 1.3779 -4.8195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060542179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:57 Heat of formation + Delta-G solvation = -49.884049 kcal Electronic energy + Delta-G solvation = -23615.005216 eV Core-core repulsion = 20239.686120 eV Total energy + Delta-G solvation = -3375.319095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.29652 -38.91395 -37.27773 -35.50546 -33.76985 -32.96510 -31.64689 -30.15101 -29.20319 -28.42791 -26.00296 -24.89413 -24.40255 -22.26352 -21.50759 -20.99231 -19.12003 -17.55230 -17.03113 -16.30748 -15.99783 -15.80636 -15.48077 -15.29292 -14.46495 -14.15559 -14.08871 -13.81613 -13.59422 -13.25154 -13.13762 -12.89902 -12.80115 -12.54093 -12.42507 -12.30511 -11.92483 -11.83212 -11.70233 -11.44818 -11.26576 -11.19427 -10.90906 -10.78322 -10.75504 -10.56876 -10.10528 -9.90908 -9.13433 -8.70081 -8.58572 -7.96247 -7.84010 -6.46223 -4.03335 1.30271 1.48061 2.96936 3.16723 3.17987 3.22207 3.57620 3.72936 4.09073 4.42785 4.68433 4.77189 4.87303 4.99335 5.10468 5.16126 5.23956 5.26356 5.31337 5.43856 5.45597 5.49587 5.54222 5.63189 5.67066 5.69529 5.72929 5.77391 5.85914 5.97643 5.98772 6.10073 6.21982 6.32670 6.36049 6.45319 6.52899 6.58692 6.66699 6.84476 7.42378 7.59230 8.19881 8.43338 8.88349 9.22951 9.65832 10.65458 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.004600 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.894250 B = 6085.013135 C = 6956.787531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.088 3.912 4 N -0.460 5.460 5 C -0.315 4.315 6 H 0.107 0.893 7 C 0.064 3.936 8 N -0.858 5.858 9 Si 0.870 3.130 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.466 3.534 14 O -0.541 6.541 15 C 0.043 3.957 16 O -0.282 6.282 17 C 0.139 3.861 18 C -0.211 4.211 19 C -0.055 4.055 20 C -0.114 4.114 21 C -0.163 4.163 22 C -0.081 4.081 23 C -0.122 4.122 24 C -0.106 4.106 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.275 0.725 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 -3.071 -17.440 20.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.036 4.036 4 N -0.184 5.184 5 C -0.442 4.442 6 H 0.124 0.876 7 C -0.142 4.142 8 N -0.494 5.494 9 Si 0.697 3.303 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.188 1.188 13 C 0.253 3.747 14 O -0.421 6.421 15 C -0.036 4.036 16 O -0.193 6.193 17 C 0.092 3.908 18 C -0.229 4.229 19 C -0.055 4.055 20 C -0.171 4.171 21 C -0.181 4.181 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.163 4.163 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.145 0.855 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.473 -2.996 -17.139 19.352 hybrid contribution -1.072 0.845 0.013 1.365 sum -9.545 -2.151 -17.126 19.724 Atomic orbital electron populations 1.21730 0.95881 1.01470 1.01639 1.21943 0.95217 0.97629 1.03019 1.21961 0.82981 0.96854 1.01825 1.43640 1.03722 1.65268 1.05720 1.19016 1.10820 1.25321 0.89020 0.87550 1.25334 0.97186 0.96990 0.94702 1.69754 1.43701 1.36252 0.99705 0.87064 0.80235 0.83194 0.79849 1.20023 1.21076 1.18803 1.19736 0.88242 0.83213 0.83513 1.90604 1.13414 1.52247 1.85798 1.22777 0.92199 1.01982 0.86610 1.86198 1.34488 1.86400 1.12252 1.18989 0.91575 0.95106 0.85124 1.21151 0.93857 1.09701 0.98235 1.19647 0.95889 0.97456 0.92512 1.20794 0.91453 1.02289 1.02525 1.20839 0.93210 1.05852 0.98204 1.20817 0.95038 0.98455 0.95627 1.19283 0.96196 1.05825 0.90983 1.20617 0.90408 1.02654 1.02622 0.92693 0.92563 0.93077 0.92383 0.90354 0.90152 0.92464 0.91466 0.90175 0.90413 0.85482 0.91133 0.91530 0.91520 0.86260 0.85618 0.91451 0.92043 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.15 0.37 -1.52 16 2 C -0.14 -2.25 6.13 -26.74 -0.16 -2.42 16 3 C 0.09 1.68 3.74 -4.04 -0.02 1.67 16 4 N -0.46 -10.99 2.18 -114.81 -0.25 -11.24 16 5 C -0.32 -8.81 9.35 -14.93 -0.14 -8.95 16 6 H 0.11 3.36 7.91 -52.49 -0.42 2.94 16 7 C 0.06 1.75 5.24 -17.47 -0.09 1.66 16 8 N -0.86 -24.39 13.96 55.50 0.77 -23.61 16 9 Si 0.87 20.09 25.12 -169.99 -4.27 15.82 16 10 H -0.27 -5.79 6.67 56.52 0.38 -5.41 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.47 11.08 7.65 -10.99 -0.08 11.00 16 14 O -0.54 -15.23 16.37 -14.37 -0.24 -15.47 16 15 C 0.04 0.79 3.83 36.01 0.14 0.92 16 16 O -0.28 -5.39 8.71 -39.32 -0.34 -5.73 16 17 C 0.14 2.22 6.66 -39.21 -0.26 1.96 16 18 C -0.21 -2.89 8.69 -39.43 -0.34 -3.23 16 19 C -0.05 -0.64 5.88 -104.65 -0.62 -1.26 16 20 C -0.11 -0.98 10.01 36.00 0.36 -0.62 16 21 C -0.16 -1.81 9.70 -39.56 -0.38 -2.19 16 22 C -0.08 -0.96 9.70 -39.61 -0.38 -1.34 16 23 C -0.12 -1.75 5.89 -104.48 -0.62 -2.37 16 24 C -0.11 -1.43 9.79 36.00 0.35 -1.07 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.87 6.39 -51.93 -0.33 0.54 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.08 1.65 3.72 -51.93 -0.19 1.46 16 31 H 0.06 0.93 6.74 -51.93 -0.35 0.58 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.26 5.87 -51.93 -0.30 0.95 16 34 H 0.08 1.25 6.94 -51.93 -0.36 0.89 16 35 H 0.13 1.58 6.30 -52.48 -0.33 1.25 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 38 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 43 H 0.08 1.20 7.53 -51.93 -0.39 0.81 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -32.41 348.33 -7.43 -39.84 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -6.48 Total: 2.93 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -1.88 Total: -7.78 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.52 Total: -34.85 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.58 Total: -21.20 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.27 Total: 15.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.41 -7.43 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.048 kcal (2) G-P(sol) polarization free energy of solvation -32.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds