Wall clock time and date at job start Tue Mar 31 2020 06:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47229 * 2 1 4 4 N 1.46502 * 109.46930 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99667 * 262.98831 * 4 3 2 6 6 H 1.08001 * 119.99938 * 142.21389 * 5 4 3 7 7 C 1.38949 * 120.00464 * 322.20702 * 5 4 3 8 8 N 1.31411 * 120.00117 * 157.13068 * 7 5 4 9 9 Si 1.86801 * 120.00026 * 337.13592 * 7 5 4 10 10 H 1.48499 * 109.47140 * 95.19933 * 9 7 5 11 11 H 1.48494 * 109.46940 * 215.20230 * 9 7 5 12 12 H 1.48501 * 109.46901 * 335.20220 * 9 7 5 13 13 C 1.34771 * 120.00071 * 82.99574 * 4 3 2 14 14 O 1.21296 * 120.00214 * 180.27390 * 13 4 3 15 15 C 1.50700 * 120.00272 * 359.97438 * 13 4 3 16 16 O 1.42898 * 109.47531 * 180.02562 * 15 13 4 17 17 C 1.35896 * 117.00322 * 179.97438 * 16 15 13 18 18 C 1.38759 * 120.05556 * 0.02562 * 17 16 15 19 19 C 1.38120 * 119.94835 * 179.97438 * 18 17 16 20 20 C 1.50699 * 119.97560 * 179.97438 * 19 18 17 21 21 C 1.38293 * 120.05026 * 0.02562 * 19 18 17 22 22 C 1.38238 * 120.11462 * 359.95283 * 21 19 18 23 23 C 1.38164 * 120.05652 * 359.77357 * 22 21 19 24 24 C 1.50696 * 120.03104 * 180.25287 * 23 22 21 25 25 H 1.09003 * 109.47116 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47306 * 299.99675 * 1 2 3 27 27 H 1.08999 * 109.47760 * 60.00042 * 1 2 3 28 28 H 1.09004 * 109.46736 * 239.99824 * 2 1 3 29 29 H 1.09003 * 109.47630 * 120.00459 * 2 1 3 30 30 H 1.08999 * 109.46956 * 60.00319 * 3 2 1 31 31 H 1.08998 * 109.46867 * 300.00067 * 3 2 1 32 32 H 0.96998 * 119.99790 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47182 * 300.01033 * 15 13 4 34 34 H 1.09001 * 109.46744 * 60.00200 * 15 13 4 35 35 H 1.08007 * 120.02587 * 359.97438 * 18 17 16 36 36 H 1.08997 * 109.47280 * 90.00006 * 20 19 18 37 37 H 1.09001 * 109.47296 * 210.00308 * 20 19 18 38 38 H 1.09001 * 109.47102 * 329.99777 * 20 19 18 39 39 H 1.08000 * 119.93974 * 179.97438 * 21 19 18 40 40 H 1.08000 * 119.97243 * 180.02562 * 22 21 19 41 41 H 1.08998 * 109.47086 * 270.27415 * 24 23 22 42 42 H 1.08997 * 109.47265 * 30.27434 * 24 23 22 43 43 H 1.09002 * 109.47516 * 150.26930 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1909 1.5871 1.1776 6 1 5.1011 1.0302 1.3444 7 6 3.7152 2.4504 2.1570 8 7 4.0687 2.2799 3.4111 9 14 2.5731 3.8532 1.6910 10 1 1.1634 3.4296 1.8867 11 1 2.8599 5.0307 2.5490 12 1 2.7883 4.2143 0.2667 13 6 4.1783 1.3002 -1.1594 14 8 5.3913 1.2952 -1.1593 15 6 3.4244 1.1407 -2.4544 16 8 4.3525 1.0079 -3.5328 17 6 3.8326 0.8539 -4.7789 18 6 2.4571 0.8316 -4.9601 19 6 1.9311 0.6754 -6.2277 20 6 0.4373 0.6505 -6.4252 21 6 2.7742 0.5409 -7.3156 22 6 4.1449 0.5632 -7.1378 23 6 4.6760 0.7248 -5.8726 24 6 6.1703 0.7548 -5.6801 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8932 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7363 2.8823 4.0949 33 1 2.7979 0.2502 -2.4028 34 1 2.7974 2.0168 -2.6200 35 1 1.7982 0.9362 -4.1107 36 1 0.0767 1.6645 -6.5982 37 1 0.1948 0.0269 -7.2856 38 1 -0.0402 0.2422 -5.5345 39 1 2.3609 0.4185 -8.3059 40 1 4.8012 0.4583 -7.9891 41 1 6.5351 -0.2581 -5.5100 42 1 6.6433 1.1663 -6.5717 43 1 6.4134 1.3779 -4.8195 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060542179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:56 Heat of formation + Delta-G solvation = -69.081854 kcal Electronic energy + Delta-G solvation = -23615.837695 eV Core-core repulsion = 20239.686120 eV Total energy + Delta-G solvation = -3376.151575 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.52539 -40.51964 -38.49982 -37.29458 -34.82662 -34.62731 -33.37897 -31.21558 -30.05999 -29.93936 -27.46384 -26.44646 -25.56230 -23.38921 -22.81031 -22.00987 -20.86539 -19.07104 -18.71061 -17.75795 -17.60574 -17.28923 -16.72231 -16.42447 -15.91985 -15.58080 -15.45944 -15.02206 -14.74208 -14.67384 -14.35857 -14.17082 -14.02220 -13.84584 -13.68632 -13.41275 -13.37966 -13.19143 -12.73981 -12.65605 -12.51107 -12.44502 -12.18261 -12.16242 -11.91575 -11.86651 -11.77862 -11.43832 -11.08015 -10.49604 -9.81106 -9.63442 -9.00038 -8.57173 -6.20450 0.37305 0.50094 1.14764 1.28006 1.40821 1.75617 1.82022 2.13290 2.76187 2.78265 2.95981 3.59689 3.74437 3.86998 3.92787 3.97323 4.05566 4.15677 4.17181 4.30760 4.37644 4.39948 4.57598 4.61747 4.65760 4.76512 4.77640 4.81699 4.89425 4.92175 4.96250 5.15957 5.19359 5.28045 5.38856 5.40212 5.42081 5.50896 5.55830 5.68194 5.91835 5.97768 6.36876 6.53448 6.85129 7.17589 7.72692 8.59837 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.004600 C = 0.004024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.894250 B = 6085.013135 C = 6956.787531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.078 3.922 4 N -0.466 5.466 5 C -0.337 4.337 6 H 0.043 0.957 7 C 0.020 3.980 8 N -0.903 5.903 9 Si 0.940 3.060 10 H -0.231 1.231 11 H -0.285 1.285 12 H -0.260 1.260 13 C 0.454 3.546 14 O -0.604 6.604 15 C 0.060 3.940 16 O -0.317 6.317 17 C 0.102 3.898 18 C -0.218 4.218 19 C -0.057 4.057 20 C -0.113 4.113 21 C -0.158 4.158 22 C -0.079 4.079 23 C -0.146 4.146 24 C -0.103 4.103 25 H 0.071 0.929 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.282 0.718 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.140 0.860 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 -2.460 -20.854 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.043 4.043 4 N -0.188 5.188 5 C -0.465 4.465 6 H 0.061 0.939 7 C -0.184 4.184 8 N -0.540 5.540 9 Si 0.763 3.237 10 H -0.155 1.155 11 H -0.212 1.212 12 H -0.184 1.184 13 C 0.243 3.757 14 O -0.487 6.487 15 C -0.018 4.018 16 O -0.230 6.230 17 C 0.057 3.943 18 C -0.236 4.236 19 C -0.057 4.057 20 C -0.169 4.169 21 C -0.176 4.176 22 C -0.097 4.097 23 C -0.146 4.146 24 C -0.160 4.160 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.158 0.842 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.169 0.831 40 H 0.171 0.829 41 H 0.084 0.916 42 H 0.106 0.894 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.891 -2.408 -20.559 24.385 hybrid contribution 0.368 0.562 1.000 1.205 sum -12.523 -1.846 -19.558 23.297 Atomic orbital electron populations 1.21706 0.92374 1.03082 1.02864 1.21890 0.98105 0.95266 1.02090 1.22285 0.79611 0.99302 1.03140 1.43752 1.05811 1.64777 1.04479 1.18593 1.10099 1.26252 0.91563 0.93917 1.26110 0.99311 0.98982 0.93949 1.69863 1.45701 1.37426 1.01015 0.85957 0.79966 0.78466 0.79352 1.15525 1.21177 1.18409 1.20756 0.87971 0.81528 0.85426 1.90559 1.16398 1.54712 1.87053 1.22554 0.91171 1.04448 0.83642 1.86141 1.35652 1.87598 1.13641 1.19339 0.93168 0.97794 0.84007 1.21361 0.92812 1.09667 0.99780 1.20087 0.97875 0.95988 0.91783 1.20865 0.88952 1.03408 1.03680 1.21296 0.92828 1.03855 0.99609 1.21155 0.96125 0.97239 0.95186 1.19562 0.96210 1.06956 0.91900 1.20571 0.91033 1.02029 1.02353 0.91003 0.92848 0.90307 0.91284 0.93526 0.91213 0.88395 0.90788 0.87318 0.87570 0.84245 0.90032 0.89794 0.90856 0.83075 0.82903 0.91618 0.89392 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.91 71.98 0.71 -2.32 16 2 C -0.13 -4.12 6.13 30.59 0.19 -3.93 16 3 C 0.08 2.86 3.74 86.38 0.32 3.18 16 4 N -0.47 -22.80 2.18 -635.54 -1.39 -24.18 16 5 C -0.34 -20.11 9.35 84.04 0.79 -19.33 16 6 H 0.04 3.01 7.91 -2.91 -0.02 2.98 16 7 C 0.02 1.11 5.24 84.93 0.45 1.55 16 8 N -0.90 -53.56 13.96 21.66 0.30 -53.26 16 9 Si 0.94 41.08 25.12 68.60 1.72 42.80 16 10 H -0.23 -8.55 6.67 99.48 0.66 -7.88 16 11 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 13 C 0.45 22.37 7.65 87.66 0.67 23.04 16 14 O -0.60 -36.52 16.37 15.96 0.26 -36.26 16 15 C 0.06 2.14 3.83 71.24 0.27 2.41 16 16 O -0.32 -12.38 8.71 -73.35 -0.64 -13.02 16 17 C 0.10 3.20 6.66 22.51 0.15 3.35 16 18 C -0.22 -5.37 8.69 22.37 0.19 -5.18 16 19 C -0.06 -1.12 5.88 -19.88 -0.12 -1.23 16 20 C -0.11 -1.39 10.01 71.24 0.71 -0.68 16 21 C -0.16 -2.86 9.70 22.28 0.22 -2.64 16 22 C -0.08 -1.64 9.70 22.25 0.22 -1.42 16 23 C -0.15 -4.06 5.89 -19.77 -0.12 -4.18 16 24 C -0.10 -2.83 9.79 71.23 0.70 -2.14 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.93 6.39 -2.38 -0.02 1.92 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.69 3.72 -2.39 -0.01 2.68 16 31 H 0.10 2.77 6.74 -2.39 -0.02 2.75 16 32 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 33 H 0.11 3.18 5.87 -2.39 -0.01 3.17 16 34 H 0.11 3.13 6.94 -2.39 -0.02 3.11 16 35 H 0.14 2.94 6.30 -2.91 -0.02 2.92 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 38 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 39 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 43 H 0.04 1.43 7.53 -2.39 -0.02 1.41 16 Total: -1.00 -79.39 348.33 6.57 -72.82 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.96 Total: 20.62 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 5.35 Total: -9.52 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -1.09 Total: -77.44 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.38 Total: -49.28 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 1.72 Total: 42.80 kcal Total: -79.39 6.57 -72.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060542179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.738 kcal (2) G-P(sol) polarization free energy of solvation -79.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds