Wall clock time and date at job start Tue Mar 31 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46828 * 2 1 4 4 H 1.09003 * 109.47093 * 304.99925 * 3 2 1 5 5 C 1.52996 * 109.46816 * 185.00182 * 3 2 1 6 6 N 1.46502 * 109.46987 * 65.00074 * 3 2 1 7 7 C 1.46496 * 119.99916 * 59.99910 * 6 3 2 8 8 C 1.34769 * 119.99864 * 239.99775 * 6 3 2 9 9 O 1.21284 * 120.00256 * 0.02562 * 8 6 3 10 10 C 1.50700 * 119.99985 * 180.02562 * 8 6 3 11 11 C 1.50707 * 109.47411 * 179.97438 * 10 8 6 12 12 C 1.38317 * 119.96298 * 269.72703 * 11 10 8 13 13 C 1.38281 * 120.13497 * 179.76384 * 12 11 10 14 14 C 1.38124 * 120.06782 * 0.51058 * 13 12 11 15 15 C 1.38851 * 119.93103 * 359.74390 * 14 13 12 16 16 O 1.35756 * 120.07306 * 179.97438 * 15 14 13 17 17 C 1.34840 * 116.99485 * 354.48503 * 16 15 14 18 18 H 1.08002 * 119.99845 * 5.06058 * 17 16 15 19 19 C 1.38648 * 119.99552 * 185.05761 * 17 16 15 20 20 N 1.31560 * 119.99595 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00393 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46989 * 90.00071 * 21 19 17 23 23 H 1.48503 * 109.47062 * 209.99644 * 21 19 17 24 24 H 1.48495 * 109.47008 * 330.00354 * 21 19 17 25 25 C 1.38076 * 119.96310 * 90.00033 * 11 10 8 26 26 H 1.08998 * 109.47036 * 60.00371 * 1 2 3 27 27 H 1.09001 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46993 * 299.99885 * 1 2 3 29 29 H 1.08996 * 109.46993 * 240.00115 * 2 1 3 30 30 H 1.08994 * 109.47280 * 120.00081 * 2 1 3 31 31 H 1.08997 * 109.47641 * 59.99968 * 5 3 2 32 32 H 1.08997 * 109.47080 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47079 * 299.99751 * 5 3 2 34 34 H 1.08998 * 109.47432 * 89.99868 * 7 6 3 35 35 H 1.09006 * 109.47132 * 209.99596 * 7 6 3 36 36 H 1.08995 * 109.47489 * 329.99848 * 7 6 3 37 37 H 1.09003 * 109.47502 * 299.99923 * 10 8 6 38 38 H 1.09002 * 109.47272 * 60.00328 * 10 8 6 39 39 H 1.07997 * 119.93420 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.96800 * 180.25563 * 13 12 11 41 41 H 1.08007 * 120.03319 * 179.76937 * 14 13 12 42 42 H 0.97006 * 120.00235 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.03798 * 359.95795 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 1.6524 2.0975 1.2518 7 6 2.1139 1.5590 2.5337 8 6 0.8714 3.1954 1.2242 9 8 0.4889 3.6411 0.1629 10 6 0.4731 3.8695 2.5118 11 6 -0.3932 5.0643 2.2065 12 6 0.1854 6.3054 2.0115 13 6 -0.6057 7.4031 1.7264 14 6 -1.9777 7.2652 1.6457 15 6 -2.5619 6.0216 1.8461 16 8 -3.9101 5.8828 1.7680 17 6 -4.6330 7.0095 1.6064 18 1 -4.1330 7.9560 1.4631 19 6 -6.0182 6.9528 1.6243 20 7 -6.7236 8.0522 1.4672 21 14 -6.8830 5.3158 1.8728 22 1 -7.1027 5.0873 3.3235 23 1 -8.1916 5.3358 1.1711 24 1 -6.0421 4.2231 1.3214 25 6 -1.7641 4.9198 2.1271 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8532 0.9571 -1.0571 32 1 3.9282 2.4720 -0.1253 33 1 3.9995 0.9054 0.7161 34 1 3.0653 2.0195 2.7999 35 1 1.3762 1.7767 3.3060 36 1 2.2436 0.4801 2.4490 37 1 -0.0823 3.1669 3.1332 38 1 1.3674 4.1959 3.0428 39 1 1.2575 6.4167 2.0789 40 1 -0.1507 8.3701 1.5706 41 1 -2.5953 8.1237 1.4266 42 1 -7.6927 8.0126 1.4793 43 1 -2.2156 3.9512 2.2831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089760272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:56 Heat of formation + Delta-G solvation = -44.016261 kcal Electronic energy + Delta-G solvation = -23182.645685 eV Core-core repulsion = 19807.581037 eV Total energy + Delta-G solvation = -3375.064649 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.23079 -39.01155 -37.09597 -36.28202 -33.51812 -32.35347 -31.85423 -30.20300 -29.36061 -27.21010 -26.94370 -25.12553 -23.95842 -22.01099 -21.49072 -20.35849 -19.03059 -17.66354 -17.30392 -16.99903 -16.05500 -15.92516 -15.14669 -14.83534 -14.21441 -14.13430 -13.89747 -13.78256 -13.62841 -13.52239 -13.26698 -13.09067 -12.78517 -12.45961 -12.40891 -12.37920 -12.10522 -11.93571 -11.66727 -11.35785 -11.25135 -11.18852 -10.90419 -10.78415 -10.74854 -10.66179 -10.11335 -9.65676 -9.33508 -8.82021 -8.73645 -8.08230 -7.29769 -6.35970 -4.02531 2.06879 2.34776 2.74530 2.96598 3.25757 3.28622 3.44837 4.28714 4.38005 4.54795 4.76574 4.80652 4.84051 4.86993 4.94261 5.08637 5.13987 5.18032 5.23091 5.31986 5.36827 5.39106 5.42743 5.57789 5.62865 5.72784 5.74513 5.78299 5.89305 5.89718 5.97148 6.15843 6.17671 6.31079 6.48751 6.59301 6.84837 7.15983 7.27300 7.32010 7.38044 7.66753 7.86713 8.10189 8.28347 8.99748 9.63217 10.71994 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.003772 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.505081 B = 7421.617440 C = 8318.046060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C 0.132 3.868 4 H 0.101 0.899 5 C -0.159 4.159 6 N -0.617 5.617 7 C 0.076 3.924 8 C 0.515 3.485 9 O -0.519 6.519 10 C -0.092 4.092 11 C -0.035 4.035 12 C -0.188 4.188 13 C -0.076 4.076 14 C -0.218 4.218 15 C 0.161 3.839 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.904 3.096 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.175 4.175 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.278 0.722 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.585 -15.165 2.233 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.029 3.971 4 H 0.119 0.881 5 C -0.217 4.217 6 N -0.353 5.353 7 C -0.067 4.067 8 C 0.304 3.696 9 O -0.393 6.393 10 C -0.132 4.132 11 C -0.035 4.035 12 C -0.207 4.207 13 C -0.094 4.094 14 C -0.237 4.237 15 C 0.109 3.891 16 O -0.125 6.125 17 C -0.463 4.463 18 H 0.123 0.877 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.194 4.194 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.122 0.878 40 H 0.128 0.872 41 H 0.150 0.850 42 H 0.089 0.911 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 18.989 -15.014 1.646 24.263 hybrid contribution -0.411 -0.497 0.149 0.662 sum 18.578 -15.511 1.795 24.268 Atomic orbital electron populations 1.21718 0.95166 1.01260 1.02624 1.21890 0.96867 0.96028 1.02200 1.21112 0.94687 0.93330 0.88004 0.88054 1.22117 0.95230 1.02365 1.02017 1.47927 1.51738 1.28813 1.06842 1.21759 1.00005 0.99696 0.85267 1.20751 0.77519 0.79647 0.91717 1.90743 1.53088 1.63235 1.32207 1.20630 1.00575 0.96557 0.95447 1.18685 0.92242 0.92983 0.99628 1.20409 0.98272 0.92703 1.09291 1.20733 0.93284 0.97663 0.97734 1.21290 0.95143 0.98273 1.08984 1.19004 0.83931 0.93111 0.93050 1.83573 1.13408 1.35022 1.80530 1.20769 0.89150 0.85930 1.50497 0.87664 1.24447 0.95164 0.98502 0.95892 1.69652 1.07208 1.27078 1.48128 0.86194 0.78573 0.83425 0.78806 1.19921 1.20813 1.18379 1.19930 0.92119 0.97380 1.09959 0.92437 0.92902 0.92664 0.91025 0.91777 0.91594 0.92261 0.92480 0.92718 0.90810 0.91086 0.88400 0.88429 0.87796 0.87194 0.85004 0.91141 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.80 37.16 0.36 -1.16 16 2 C -0.13 -1.08 5.36 -26.72 -0.14 -1.22 16 3 C 0.13 1.31 2.64 -67.93 -0.18 1.13 16 4 H 0.10 1.29 6.90 -51.93 -0.36 0.94 16 5 C -0.16 -1.22 9.19 37.16 0.34 -0.88 16 6 N -0.62 -6.48 2.21 -173.94 -0.39 -6.87 16 7 C 0.08 0.51 9.30 59.84 0.56 1.07 16 8 C 0.52 7.40 7.67 -10.99 -0.08 7.31 16 9 O -0.52 -9.95 15.36 5.55 0.09 -9.86 16 10 C -0.09 -1.20 4.38 -29.03 -0.13 -1.33 16 11 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 12 C -0.19 -3.36 9.70 -39.54 -0.38 -3.75 16 13 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 14 C -0.22 -4.96 9.17 -39.40 -0.36 -5.32 16 15 C 0.16 3.91 6.65 -39.11 -0.26 3.65 16 16 O -0.22 -6.05 8.59 0.00 0.00 -6.05 16 17 C -0.39 -11.28 9.95 30.88 0.31 -10.98 16 18 H 0.11 3.12 5.44 -52.49 -0.29 2.84 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 20 N -0.88 -26.07 13.96 55.48 0.77 -25.29 16 21 Si 0.90 22.25 28.62 -169.99 -4.86 17.39 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.17 -3.68 9.65 -39.40 -0.38 -4.06 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.63 7.75 -51.93 -0.40 0.23 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.44 6.47 -51.93 -0.34 0.11 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.36 7.67 -51.93 -0.40 -0.04 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16 36 H 0.07 0.38 6.34 -51.93 -0.33 0.05 16 37 H 0.10 1.08 7.34 -51.93 -0.38 0.69 16 38 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.13 3.12 5.64 -52.48 -0.30 2.83 16 42 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.11 2.24 8.06 -52.48 -0.42 1.81 16 LS Contribution 352.80 15.07 5.32 5.32 Total: -1.00 -33.50 352.80 -6.85 -40.35 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -6.48 Total: 1.78 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.30 Total: -16.76 kcal Atomic # 7 Polarization: -32.55 SS G_CDS: 0.39 Total: -32.16 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.09 Total: -15.91 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.86 Total: 17.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.50 -6.85 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089760272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.665 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds