Wall clock time and date at job start Tue Mar 31 2020 06:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53006 * 109.46828 * 2 1 4 4 H 1.09003 * 109.47093 * 304.99925 * 3 2 1 5 5 C 1.52996 * 109.46816 * 185.00182 * 3 2 1 6 6 N 1.46502 * 109.46987 * 65.00074 * 3 2 1 7 7 C 1.46496 * 119.99916 * 59.99910 * 6 3 2 8 8 C 1.34769 * 119.99864 * 239.99775 * 6 3 2 9 9 O 1.21284 * 120.00256 * 0.02562 * 8 6 3 10 10 C 1.50700 * 119.99985 * 180.02562 * 8 6 3 11 11 C 1.50707 * 109.47411 * 179.97438 * 10 8 6 12 12 C 1.38317 * 119.96298 * 269.72703 * 11 10 8 13 13 C 1.38281 * 120.13497 * 179.76384 * 12 11 10 14 14 C 1.38124 * 120.06782 * 0.51058 * 13 12 11 15 15 C 1.38851 * 119.93103 * 359.74390 * 14 13 12 16 16 O 1.35756 * 120.07306 * 179.97438 * 15 14 13 17 17 C 1.34840 * 116.99485 * 354.48503 * 16 15 14 18 18 H 1.08002 * 119.99845 * 5.06058 * 17 16 15 19 19 C 1.38648 * 119.99552 * 185.05761 * 17 16 15 20 20 N 1.31560 * 119.99595 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00393 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46989 * 90.00071 * 21 19 17 23 23 H 1.48503 * 109.47062 * 209.99644 * 21 19 17 24 24 H 1.48495 * 109.47008 * 330.00354 * 21 19 17 25 25 C 1.38076 * 119.96310 * 90.00033 * 11 10 8 26 26 H 1.08998 * 109.47036 * 60.00371 * 1 2 3 27 27 H 1.09001 * 109.46768 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46993 * 299.99885 * 1 2 3 29 29 H 1.08996 * 109.46993 * 240.00115 * 2 1 3 30 30 H 1.08994 * 109.47280 * 120.00081 * 2 1 3 31 31 H 1.08997 * 109.47641 * 59.99968 * 5 3 2 32 32 H 1.08997 * 109.47080 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47079 * 299.99751 * 5 3 2 34 34 H 1.08998 * 109.47432 * 89.99868 * 7 6 3 35 35 H 1.09006 * 109.47132 * 209.99596 * 7 6 3 36 36 H 1.08995 * 109.47489 * 329.99848 * 7 6 3 37 37 H 1.09003 * 109.47502 * 299.99923 * 10 8 6 38 38 H 1.09002 * 109.47272 * 60.00328 * 10 8 6 39 39 H 1.07997 * 119.93420 * 359.97438 * 12 11 10 40 40 H 1.07995 * 119.96800 * 180.25563 * 13 12 11 41 41 H 1.08007 * 120.03319 * 179.76937 * 14 13 12 42 42 H 0.97006 * 120.00235 * 179.97438 * 20 19 17 43 43 H 1.08003 * 120.03798 * 359.95795 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1258 6 7 1.6524 2.0975 1.2518 7 6 2.1139 1.5590 2.5337 8 6 0.8714 3.1954 1.2242 9 8 0.4889 3.6411 0.1629 10 6 0.4731 3.8695 2.5118 11 6 -0.3932 5.0643 2.2065 12 6 0.1854 6.3054 2.0115 13 6 -0.6057 7.4031 1.7264 14 6 -1.9777 7.2652 1.6457 15 6 -2.5619 6.0216 1.8461 16 8 -3.9101 5.8828 1.7680 17 6 -4.6330 7.0095 1.6064 18 1 -4.1330 7.9560 1.4631 19 6 -6.0182 6.9528 1.6243 20 7 -6.7236 8.0522 1.4672 21 14 -6.8830 5.3158 1.8728 22 1 -7.1027 5.0873 3.3235 23 1 -8.1916 5.3358 1.1711 24 1 -6.0421 4.2231 1.3214 25 6 -1.7641 4.9198 2.1271 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8532 0.9571 -1.0571 32 1 3.9282 2.4720 -0.1253 33 1 3.9995 0.9054 0.7161 34 1 3.0653 2.0195 2.7999 35 1 1.3762 1.7767 3.3060 36 1 2.2436 0.4801 2.4490 37 1 -0.0823 3.1669 3.1332 38 1 1.3674 4.1959 3.0428 39 1 1.2575 6.4167 2.0789 40 1 -0.1507 8.3701 1.5706 41 1 -2.5953 8.1237 1.4266 42 1 -7.6927 8.0126 1.4793 43 1 -2.2156 3.9512 2.2831 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089760272.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:56 Heat of formation + Delta-G solvation = -64.284073 kcal Electronic energy + Delta-G solvation = -23183.524564 eV Core-core repulsion = 19807.581037 eV Total energy + Delta-G solvation = -3375.943527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.35136 -40.65487 -38.53420 -37.53459 -34.53889 -34.37954 -33.15856 -31.14689 -30.87010 -28.46290 -27.67935 -27.17748 -24.73569 -23.46702 -22.91053 -21.67524 -19.98803 -19.61608 -18.81694 -18.23553 -17.01137 -16.97021 -16.81816 -16.39838 -15.78523 -15.65692 -15.28116 -14.96560 -14.71825 -14.59748 -14.36372 -14.22518 -14.12121 -13.93455 -13.78832 -13.22025 -13.10530 -12.99975 -12.85061 -12.64432 -12.52107 -12.43373 -12.35389 -12.08095 -11.94171 -11.90570 -11.60710 -11.32275 -10.93630 -10.78856 -9.67508 -9.56375 -9.07759 -8.51532 -6.24420 0.47575 0.68713 1.28184 1.32976 1.49793 1.69997 2.09489 2.26771 2.76223 3.03665 3.11612 3.66565 3.79193 4.02203 4.06579 4.11119 4.17262 4.27426 4.33670 4.41585 4.49703 4.53700 4.60944 4.61715 4.68409 4.70672 4.76612 4.90333 4.94700 5.01270 5.03097 5.08850 5.20069 5.23442 5.29570 5.37852 5.39200 5.63640 5.70911 5.72455 5.75798 5.90167 6.23097 6.45972 6.82732 7.27974 7.57551 8.60424 Molecular weight = 291.16amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.003772 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.505081 B = 7421.617440 C = 8318.046060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.126 3.874 4 H 0.063 0.937 5 C -0.151 4.151 6 N -0.607 5.607 7 C 0.064 3.936 8 C 0.510 3.490 9 O -0.583 6.583 10 C -0.089 4.089 11 C -0.028 4.028 12 C -0.172 4.172 13 C -0.077 4.077 14 C -0.241 4.241 15 C 0.120 3.880 16 O -0.247 6.247 17 C -0.401 4.401 18 H 0.080 0.920 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.265 1.265 24 H -0.268 1.268 25 C -0.182 4.182 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.039 0.961 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.141 0.859 41 H 0.108 0.892 42 H 0.285 0.715 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.034 -18.169 3.940 29.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C 0.022 3.978 4 H 0.081 0.919 5 C -0.208 4.208 6 N -0.340 5.340 7 C -0.077 4.077 8 C 0.300 3.700 9 O -0.462 6.462 10 C -0.128 4.128 11 C -0.028 4.028 12 C -0.190 4.190 13 C -0.095 4.095 14 C -0.260 4.260 15 C 0.071 3.929 16 O -0.155 6.155 17 C -0.477 4.477 18 H 0.097 0.903 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.793 3.207 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.201 4.201 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 22.510 -18.053 3.389 29.054 hybrid contribution -1.118 0.393 -0.371 1.242 sum 21.392 -17.660 3.019 27.904 Atomic orbital electron populations 1.21716 0.96952 1.01553 1.00580 1.21862 0.95098 0.95066 1.04102 1.21189 0.96206 0.93705 0.86657 0.91913 1.22046 0.93078 1.02073 1.03650 1.47987 1.50031 1.27383 1.08643 1.22122 1.01220 1.01020 0.83352 1.20951 0.77567 0.80417 0.91103 1.90735 1.55848 1.65390 1.34228 1.20740 1.01552 0.94961 0.95510 1.19249 0.91488 0.95217 0.96865 1.20993 1.00257 0.91879 1.05857 1.21113 0.91755 0.99962 0.96677 1.21317 0.96859 0.97220 1.10605 1.19580 0.83243 0.94991 0.95086 1.83512 1.14957 1.34011 1.83047 1.20726 0.89888 0.85936 1.51165 0.90276 1.25277 0.95634 1.02200 0.95688 1.69733 1.07812 1.29020 1.49906 0.85223 0.77629 0.78446 0.79426 1.18522 1.18956 1.19306 1.20250 0.93499 0.96643 1.09742 0.95063 0.91395 0.94157 0.89592 0.89292 0.90491 0.93552 0.90188 0.90647 0.89595 0.89161 0.85845 0.84270 0.83544 0.84125 0.87449 0.90526 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.80 71.99 0.71 -2.17 16 2 C -0.12 -1.67 5.36 30.60 0.16 -1.51 16 3 C 0.13 2.23 2.64 44.99 0.12 2.35 16 4 H 0.06 1.63 6.90 -2.39 -0.02 1.61 16 5 C -0.15 -1.83 9.19 71.98 0.66 -1.17 16 6 N -0.61 -10.89 2.21 -822.60 -1.82 -12.71 16 7 C 0.06 0.53 9.30 127.77 1.19 1.72 16 8 C 0.51 13.52 7.67 87.66 0.67 14.19 16 9 O -0.58 -22.33 15.36 -3.04 -0.05 -22.38 16 10 C -0.09 -1.96 4.38 29.10 0.13 -1.83 16 11 C -0.03 -0.93 4.37 -19.88 -0.09 -1.01 16 12 C -0.17 -5.63 9.70 22.30 0.22 -5.42 16 13 C -0.08 -2.91 10.04 22.25 0.22 -2.69 16 14 C -0.24 -11.51 9.17 22.39 0.21 -11.30 16 15 C 0.12 6.10 6.65 22.58 0.15 6.25 16 16 O -0.25 -14.38 8.59 -22.91 -0.20 -14.58 16 17 C -0.40 -24.89 9.95 67.92 0.68 -24.21 16 18 H 0.08 5.14 5.44 -2.91 -0.02 5.13 16 19 C 0.01 0.61 5.49 84.83 0.47 1.08 16 20 N -0.92 -56.99 13.96 21.61 0.30 -56.69 16 21 Si 0.97 47.31 28.62 68.60 1.96 49.27 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 25 C -0.18 -7.70 9.65 22.39 0.22 -7.48 16 26 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 0.87 7.75 -2.39 -0.02 0.85 16 29 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.80 6.47 -2.39 -0.02 0.79 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 0.62 7.67 -2.39 -0.02 0.60 16 34 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.09 0.55 6.44 -2.38 -0.02 0.54 16 36 H 0.09 0.45 6.34 -2.39 -0.02 0.44 16 37 H 0.12 2.15 7.34 -2.39 -0.02 2.14 16 38 H 0.14 1.97 8.05 -2.39 -0.02 1.95 16 39 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 40 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 41 H 0.11 5.57 5.64 -2.91 -0.02 5.56 16 42 H 0.29 16.06 8.31 -92.70 -0.77 15.29 16 43 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 Total: -1.00 -80.28 352.80 6.90 -73.38 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.99 Total: 16.91 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 5.70 Total: -33.21 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.52 Total: -69.40 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.24 Total: -36.95 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.96 Total: 49.27 kcal Total: -80.28 6.90 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089760272.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.094 kcal (2) G-P(sol) polarization free energy of solvation -80.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds